Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Reverse (-)

36617399 .. 36618506

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1274000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCGCAATCCACTGCTCCTTCACTCTCCACTCTCTTCAACCGCCGCCGCCGCTTCCTCCTCAGCTCTCCAGCCTCAGACCTTCTCTCCTCTCCGCCAGCAAACACCCAAACAGCAAGAAGAACAAAAAGCTCACCGGATACAGACCCTGCAGAGTGGAGTTCTCAAATGACGATGCCGAAGGCGGTTCGGCGATGGATTCCACCGATGCCAGGTTCGCCGTCATGGGCGTCATCAGCTTCATTCCCTACTTCAATTGGCTGAGTTGGATTTTTGCTTGGTTGGATACCGGAAAACGGCGGTATGCGGTGTATGCGCTTGTGTACTTGGTTCCCTACCTGAGGACGAATTTGTCGTTGTCACCTGAGGAGAACTGGCTGCCCATTGCTAGCATCGTTTTCTGCATTATTCATGTCCAGTGGCCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

9.1

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
AciI	CCGC	9 cut(s)	6, 44, 47, 50, 53, 96, 186, 301, 308
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	213, 297, 342
AgsI	TTSAA	2 cut(s)	41, 256
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	67, 133, 240
AluI	AGCT	3 cut(s)	67, 133, 240
AlwNI	CAGNNNCTG	1 cut(s)	150
AoxI	GGCC	2 cut(s)	3, 422
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	127, 354
AsuNHI	GCTAGC	1 cut(s)	389
AxyI	CCTNAGG	2 cut(s)	341, 366
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	2 cut(s)	206, 314
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	2 cut(s)	134, 280
BfaI	CTAG	2 cut(s)	390, 430
BfmI	CTRYAG	1 cut(s)	151
BfuI	GTATCC	2 cut(s)	134, 280
BisI	GCNGC	5 cut(s)	6, 47, 50, 53, 380
BlsI	GCNGC	5 cut(s)	7, 48, 51, 54, 381
Bme1390I	CCNGG	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	3 cut(s)	166, 199, 402
BmtI	GCTAGC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	231
BsaWI	WCCGGW	2 cut(s)	137, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 297, 342
Bse1I	ACTGG	2 cut(s)	380, 418
Bse21I	CCTNAGG	2 cut(s)	341, 366
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	213, 297, 342
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	5 cut(s)	77, 91, 254, 332, 357
BseNI	ACTGG	2 cut(s)	380, 418
BseRI	GAGGAG	3 cut(s)	51, 80, 383
BseXI	GCAGC	1 cut(s)	366
BshFI	GGCC	2 cut(s)	5, 424
BsiSI	CCGG	2 cut(s)	138, 291
BslI	CCNNNNNNNGG	3 cut(s)	213, 297, 342
BsnI	GGCC	2 cut(s)	5, 424
BspACI	CCGC	9 cut(s)	6, 44, 47, 50, 53, 96, 186, 301, 308
BspANI	GGCC	2 cut(s)	5, 424
BspCNI	CTCAG	5 cut(s)	76, 90, 255, 333, 358
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	380, 418
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	100, 391, 426
BstDEI	CTNAG	5 cut(s)	63, 77, 263, 341, 366
BstENI	CCTNNNNNAGG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 218, 237, 314
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	366
Bsu36I	CCTNAGG	2 cut(s)	341, 366
BsuI	GTATCC	2 cut(s)	134, 280
BsuRI	GGCC	2 cut(s)	5, 424
BtgZI	GCGATG	1 cut(s)	209
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 425
Cac8I	GCNNGC	3 cut(s)	100, 391, 426
CaiI	CAGNNNCTG	1 cut(s)	150
CfoI	GCGC	1 cut(s)	319
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	226, 413
CviJI	RGCY	8 cut(s)	5, 67, 75, 133, 240, 262, 379, 424
CviKI_1	RGCY	8 cut(s)	5, 67, 75, 133, 240, 262, 379, 424
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	5 cut(s)	63, 77, 263, 341, 366
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	85
Eco81I	CCTNAGG	2 cut(s)	341, 366
EcoNI	CCTNNNNNAGG	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	229, 416
FaiI	YATR	4 cut(s)	227, 306, 315, 414
FatI	CATG	2 cut(s)	225, 412
Fnu4HI	GCNGC	5 cut(s)	6, 47, 50, 53, 380
Fsp4HI	GCNGC	5 cut(s)	6, 47, 50, 53, 380
FspBI	CTAG	2 cut(s)	390, 430
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	5 cut(s)	6, 47, 50, 53, 380
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	5, 424
HapII	CCGG	2 cut(s)	138, 291
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	229, 416
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	138, 291
HphI	GGTGA	2 cut(s)	127, 354
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	31, 93, 176
HpyCH4V	TGCA	2 cut(s)	153, 405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 218, 237, 314
HpyF3I	CTNAG	5 cut(s)	63, 77, 263, 341, 366
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	229, 416
HspAI	GCGC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	3 cut(s)	166, 199, 402
MaeI	CTAG	2 cut(s)	390, 430
MaeIII	GTNAC	1 cut(s)	360
MboII	GAAGA	2 cut(s)	29, 133
MfeI	CAATTG	1 cut(s)	256
MluCI	AATT	2 cut(s)	256, 349
MmeI	TCCRAC	2 cut(s)	248, 264
MnlI	CCTC	6 cut(s)	69, 72, 86, 101, 336, 361
MspI	CCGG	2 cut(s)	138, 291
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	4 cut(s)	52, 218, 237, 314
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	2 cut(s)	229, 416
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	5 cut(s)	7, 48, 51, 54, 381
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	150
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	5 cut(s)	6, 47, 50, 53, 380
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	7 cut(s)	69, 85, 135, 218, 242, 342, 367
SfaNI	GCATC	3 cut(s)	166, 199, 402
SfcI	CTRYAG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	256, 349
SsiI	CCGC	9 cut(s)	6, 44, 47, 50, 53, 96, 186, 301, 308
SspMI	CTAG	2 cut(s)	390, 430
StyD4I	CCNGG	1 cut(s)	212
TasI	AATT	2 cut(s)	256, 349
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	4 cut(s)	8, 49, 52, 55
TfiI	GAWTC	1 cut(s)	200
TscAI	CASTG	2 cut(s)	20, 425
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	232, 401
TspRI	CASTG	2 cut(s)	20, 425
XagI	CCTNNNNNAGG	1 cut(s)	340
XapI	RAATTY	1 cut(s)	349
XspI	CTAG	2 cut(s)	390, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.