Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Reverse (-)

6594878 .. 6596819

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGTCAATCCACTTCTCCAACTCTCTCACTGCTCTTAAACCTCCTCATCTTCCTCCTTACCTCTCCGCCCTTAAACCCTCTTCTTTTCTCCACAACAAGTTTCCAAACCCAACTAAGATCACCAAATACACAGCCTTTAGAGCCGAGCTCTCCCACGACGCGCCGTTCGCCGCCGCCATCGGCGCGTGCGTGCTCTCGTCGCTGGTGCTTCCGCCGGTCTCTGCTCCGGCAGACGATCCTGATGCTGGTTCCGGTATTGACTCCACCGATGCTAGGTTCGCAGTCATGGGGGTTGTTAGCTTCATTCCCTACTTCAATTGGCTGAGTTGGGTTTTTGCTTGGCTGGATTCTGGGAAAAGGCGCTATGCTGTGTATGCACTTGTGTATTTGATCCCCTACATCAGATCAAATTTGAATTTGTCTCCTGAGGAGAGCTGGCTGCCTATTGCTAGCATTGTTTTCTGCATTATTCATGTCCAGCTAGAAGCAAGTATTAAAAATGGAGATCTTCAGGGCTTTCAATTCTTTAATGAAGCTGCAAAGCATATTTCAGCAGTGACTAAAAAAAGAGATTATCTAGATGGGCATCAAGGTGCCTCGAAGAAGGGGAGGGAAAGAGAAAATAAGAACCTGCCATTCGGCCAAGAGCAGTCAAGAAACGAGATTGATAATTGGGGAGCTCCCAAAAGGCCCTTACAAGACCGTGACTTGAAGGAAGATAGGGATGACAATGAAAGAAGGAAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

28.08

Weight (kDa)

8.76

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	596
AccII	CGCG	2 cut(s)	164, 188
AciI	CCGC	4 cut(s)	69, 174, 177, 215
AclWI	GGATC	2 cut(s)	233, 388
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	2 cut(s)	412, 418
AcuI	CTGAAG	1 cut(s)	497
AfiI	CCNNNNNNNGG	2 cut(s)	248, 276
AgsI	TTSAA	4 cut(s)	319, 418, 524, 715
AluBI	AGCT	6 cut(s)	151, 303, 438, 484, 539, 683
AluI	AGCT	6 cut(s)	151, 303, 438, 484, 539, 683
Alw21I	GWGCWC	3 cut(s)	153, 198, 685
Alw26I	GTCTC	2 cut(s)	226, 429
AlwI	GGATC	2 cut(s)	233, 388
AoxI	GGCC	2 cut(s)	643, 692
ApeKI	GCWGC	2 cut(s)	442, 539
ApoI	RAATTY	2 cut(s)	412, 418
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	3 cut(s)	166, 188, 366
AspS9I	GGNCC	1 cut(s)	693
AsuHPI	GGTGA	1 cut(s)	115
AsuNHI	GCTAGC	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	2 cut(s)	153, 685
Bbv12I	GWGCWC	3 cut(s)	153, 198, 685
BbvI	GCAGC	2 cut(s)	429, 526
BccI	CCATC	2 cut(s)	188, 578
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BcoDI	GTCTC	2 cut(s)	226, 429
BfaI	CTAG	5 cut(s)	276, 453, 485, 581, 751
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	642
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	4 cut(s)	174, 177, 443, 540
BlsI	GCNGC	4 cut(s)	175, 178, 444, 541
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	2 cut(s)	253, 598
BmsI	GCATC	3 cut(s)	235, 262, 598
BmtI	GCTAGC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
BsaBI	GATNNNNATC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 276
Bse118I	RCCGGY	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	588
BseGI	GGATG	1 cut(s)	733
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	248, 276
BseMII	CTCAG	2 cut(s)	317, 420
BseRI	GAGGAG	2 cut(s)	36, 446
BseXI	GCAGC	2 cut(s)	429, 526
Bsh1236I	CGCG	2 cut(s)	164, 188
BshFI	GGCC	2 cut(s)	645, 694
BshNI	GGYRCC	1 cut(s)	596
BsiHKAI	GWGCWC	3 cut(s)	153, 198, 685
BsiSI	CCGG	3 cut(s)	218, 230, 255
BslI	CCNNNNNNNGG	2 cut(s)	248, 276
BsmAI	GTCTC	2 cut(s)	226, 429
BsnI	GGCC	2 cut(s)	645, 694
Bso31I	GGTCTC	1 cut(s)	226
Bsp1286I	GDGCHC	3 cut(s)	153, 198, 685
Bsp143I	GATC	5 cut(s)	120, 238, 393, 407, 508
BspACI	CCGC	4 cut(s)	69, 174, 177, 215
BspANI	GGCC	2 cut(s)	645, 694
BspCNI	CTCAG	2 cut(s)	318, 421
BspFNI	CGCG	2 cut(s)	164, 188
BspLI	GGNNCC	2 cut(s)	253, 598
BspMI	ACCTGC	1 cut(s)	642
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	233, 388
BspT107I	GGYRCC	1 cut(s)	596
BspTNI	GGTCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	217
BssMI	GATC	5 cut(s)	120, 238, 393, 407, 508
Bst4CI	ACNGT	1 cut(s)	707
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	4 cut(s)	190, 194, 440, 454
BstDEI	CTNAG	3 cut(s)	117, 326, 429
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	2 cut(s)	164, 188
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	3 cut(s)	166, 188, 366
BstKTI	GATC	5 cut(s)	123, 241, 396, 410, 511
BstMAI	GTCTC	2 cut(s)	226, 429
BstMBI	GATC	5 cut(s)	120, 238, 393, 407, 508
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 170, 185, 202, 281, 377
BstUI	CGCG	2 cut(s)	164, 188
BstV1I	GCAGC	2 cut(s)	429, 526
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	645, 694
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	2 cut(s)	30, 564
BtsIMutI	CAGTG	2 cut(s)	30, 564
BveI	ACCTGC	1 cut(s)	642
Cac8I	GCNNGC	4 cut(s)	190, 194, 440, 454
CfoI	GCGC	3 cut(s)	166, 188, 366
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	693
CseI	GACGC	1 cut(s)	170
CviAII	CATG	2 cut(s)	289, 476
DdeI	CTNAG	3 cut(s)	117, 326, 429
DpnI	GATC	5 cut(s)	122, 240, 395, 409, 510
DpnII	GATC	5 cut(s)	120, 238, 393, 407, 508
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	2 cut(s)	58, 204
Ecl136II	GAGCTC	2 cut(s)	151, 683
Eco24I	GRGCYC	2 cut(s)	153, 685
Eco31I	GGTCTC	1 cut(s)	226
Eco53kI	GAGCTC	2 cut(s)	151, 683
Eco57I	CTGAAG	1 cut(s)	497
Eco81I	CCTNAGG	1 cut(s)	429
EcoICRI	GAGCTC	2 cut(s)	151, 683
EcoO109I	RGGNCCY	1 cut(s)	693
EcoT38I	GRGCYC	2 cut(s)	153, 685
FaeI	CATG	2 cut(s)	292, 479
FaiI	YATR	5 cut(s)	290, 369, 378, 477, 549
FatI	CATG	2 cut(s)	288, 475
Fnu4HI	GCNGC	4 cut(s)	174, 177, 443, 540
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	2 cut(s)	153, 685
Fsp4HI	GCNGC	4 cut(s)	174, 177, 443, 540
FspBI	CTAG	5 cut(s)	276, 453, 485, 581, 751
GlaI	GCGC	3 cut(s)	165, 187, 365
GluI	GCNGC	4 cut(s)	174, 177, 443, 540
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	645, 694
HapII	CCGG	3 cut(s)	218, 230, 255
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	3 cut(s)	166, 188, 366
Hin1II	CATG	2 cut(s)	292, 479
Hin6I	GCGC	3 cut(s)	164, 186, 364
HinP1I	GCGC	3 cut(s)	164, 186, 364
HinfI	GANTC	2 cut(s)	263, 350
HpaII	CCGG	3 cut(s)	218, 230, 255
HphI	GGTGA	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	4 cut(s)	242, 428, 581, 657
Hpy99I	CGWCG	2 cut(s)	164, 205
HpyAV	CCTTC	3 cut(s)	601, 709, 735
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4V	TGCA	3 cut(s)	380, 468, 542
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 170, 185, 202, 281, 377
HpyF3I	CTNAG	3 cut(s)	117, 326, 429
Hsp92II	CATG	2 cut(s)	292, 479
HspAI	GCGC	3 cut(s)	164, 186, 364
Kzo9I	GATC	5 cut(s)	120, 238, 393, 407, 508
LmnI	GCTCC	3 cut(s)	232, 680, 688
Lsp1109I	GCAGC	2 cut(s)	429, 526
LweI	GCATC	3 cut(s)	235, 262, 598
MaeI	CTAG	5 cut(s)	276, 453, 485, 581, 751
MaeIII	GTNAC	2 cut(s)	559, 707
MalI	GATC	5 cut(s)	122, 240, 395, 409, 510
MboI	GATC	5 cut(s)	120, 238, 393, 407, 508
MboII	GAAGA	5 cut(s)	44, 75, 503, 616, 731
MfeI	CAATTG	1 cut(s)	319
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	3 cut(s)	153, 198, 685
MluCI	AATT	5 cut(s)	319, 412, 418, 524, 673
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	8 cut(s)	54, 57, 66, 74, 91, 424, 606, 610
MseI	TTAA	4 cut(s)	39, 75, 498, 531
MslI	CAYNNNNRTG	1 cut(s)	594
MspI	CCGG	3 cut(s)	218, 230, 255
MunI	CAATTG	1 cut(s)	319
MvnI	CGCG	2 cut(s)	164, 188
MwoI	GCNNNNNNNGC	6 cut(s)	143, 170, 185, 202, 281, 377
NdeII	GATC	5 cut(s)	120, 238, 393, 407, 508
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	292, 479
NlaIV	GGNNCC	2 cut(s)	253, 598
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	559, 707
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	175, 178, 444, 541
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp124BI	GAGCTC	2 cut(s)	153, 685
PspN4I	GGNNCC	2 cut(s)	253, 598
PspPI	GGNCC	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	2 cut(s)	153, 685
SaqAI	TTAA	4 cut(s)	39, 75, 498, 531
SatI	GCNGC	4 cut(s)	174, 177, 443, 540
Sau3AI	GATC	5 cut(s)	120, 238, 393, 407, 508
Sau96I	GGNCC	1 cut(s)	693
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	3 cut(s)	153, 198, 685
SfaNI	GCATC	3 cut(s)	235, 262, 598
SmiMI	CAYNNNNRTG	1 cut(s)	594
Sse9I	AATT	5 cut(s)	319, 412, 418, 524, 673
SsiI	CCGC	4 cut(s)	69, 174, 177, 215
SspMI	CTAG	5 cut(s)	276, 453, 485, 581, 751
SstI	GAGCTC	2 cut(s)	153, 685
TaaI	ACNGT	1 cut(s)	707
TaqI	TCGA	1 cut(s)	602
TasI	AATT	5 cut(s)	319, 412, 418, 524, 673
TauI	GCSGC	2 cut(s)	176, 179
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	4 cut(s)	39, 75, 498, 531
Tru9I	TTAA	4 cut(s)	39, 75, 498, 531
TscAI	CASTG	2 cut(s)	37, 564
TseFI	GTSAC	2 cut(s)	559, 707
TseI	GCWGC	2 cut(s)	442, 539
Tsp45I	GTSAC	2 cut(s)	559, 707
TspDTI	ATGAA	4 cut(s)	295, 464, 549, 750
TspRI	CASTG	2 cut(s)	37, 564
XapI	RAATTY	2 cut(s)	412, 418
XbaI	TCTAGA	1 cut(s)	580
XspI	CTAG	5 cut(s)	276, 453, 485, 581, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.