Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Reverse (-)

13816274 .. 13816837

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGAATTTTAAGATCATCTCTCTTTCCTAAAACGCGCGAGAGTCGAGGTGGCTGCCACTCAGGCTCAGCTGTGCAGTATCTCCGATTACATTGGCAGGAATCCAGTGCAGTGCGCCTCACATGTTACGCTAACCTCTCCCGAACCCAAGCAAAACCCATGGCCGCCGCAATCCACTGCTCCTCGGCTCTCCACTCCCTAAAACCGCCGCCGCTTCCTCCTCAGCTCTCTAGCCTCAGACCCTCTCTCCTCTCCGCCAACAAACACCCAAACCGGAGGAAGAACAATAACCTCTCCGGATACAGACTCTGCAGAGCGGAGTTCTCAAACGACGCGCCGTTCGCCGCCTCCATCGGCGCCCGCATGCTCTCGTCCCTGGTGCTTCCTGTCAGCACTCCCGACGACGATGACAGTGGGGTTCGCCGATGGATTCCACCGATGCCAGGTTTGCCGTCATGGGCATCGTCAGCTTCATTCCCTACTTCAATTGGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.03

Weight (kDa)

10.63

Isoelectric Point (pI)

62.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	317
AccII	CGCG	3 cut(s)	37, 39, 335
AccIII	TCCGGA	1 cut(s)	296
AciI	CCGC	9 cut(s)	165, 168, 206, 209, 212, 255, 317, 345, 361
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	6
AcyI	GRCGYC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	486
AjnI	CCWGG	2 cut(s)	375, 442
AluBI	AGCT	3 cut(s)	71, 226, 470
AluI	AGCT	3 cut(s)	71, 226, 470
AlwNI	CAGNNNCTG	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	296
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	4 cut(s)	39, 117, 337, 359
BanI	GGYRCC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	359, 420
BceAI	ACGGC	2 cut(s)	322, 436
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	2 cut(s)	377, 444
BciVI	GTATCC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	310
BfoI	RGCGCY	1 cut(s)	360
BfuI	GTATCC	1 cut(s)	293
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	6 cut(s)	55, 165, 168, 209, 212, 345
BlpI	GCTNAGC	1 cut(s)	67
BlsI	GCNGC	6 cut(s)	56, 166, 169, 210, 213, 346
Bme1390I	CCNGG	2 cut(s)	377, 444
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	2 cut(s)	377, 444
BmsI	GCATC	2 cut(s)	429, 470
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	159, 183, 375
BsaWI	WCCGGW	2 cut(s)	273, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	377, 444
BseDI	CCNNGG	3 cut(s)	159, 183, 375
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	4 cut(s)	75, 81, 236, 250
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	3 cut(s)	172, 210, 239
BseXI	GCAGC	1 cut(s)	41
BsgI	GTGCAG	2 cut(s)	95, 129
Bsh1236I	CGCG	3 cut(s)	37, 39, 335
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	274, 297
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	164
Bsp13I	TCCGGA	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	14
Bsp1720I	GCTNAGC	1 cut(s)	67
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	9 cut(s)	165, 168, 206, 209, 212, 255, 317, 345, 361
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	4 cut(s)	74, 80, 235, 249
BspEI	TCCGGA	1 cut(s)	296
BspFNI	CGCG	3 cut(s)	37, 39, 335
BspLI	GGNNCC	1 cut(s)	358
BspMAI	CTGCAG	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	159, 183, 375
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	377, 444
Bst4CI	ACNGT	1 cut(s)	413
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	361, 365
BstDEI	CTNAG	4 cut(s)	61, 67, 222, 236
BstDSI	CCRYGG	1 cut(s)	159
BstFNI	CGCG	3 cut(s)	37, 39, 335
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	4 cut(s)	39, 117, 337, 359
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 341, 448, 467
BstNI	CCWGG	2 cut(s)	377, 444
BstNSI	RCATGY	2 cut(s)	126, 367
BstSCI	CCNGG	2 cut(s)	375, 442
BstSFI	CTRYAG	1 cut(s)	310
BstUI	CGCG	3 cut(s)	37, 39, 335
BstV1I	GCAGC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	159
BtsI	GCAGTG	2 cut(s)	117, 175
BtsIMutI	CAGTG	4 cut(s)	112, 117, 175, 418
Cac8I	GCNNGC	2 cut(s)	361, 365
CaiI	CAGNNNCTG	1 cut(s)	309
CfoI	GCGC	4 cut(s)	39, 117, 337, 359
CseI	GACGC	1 cut(s)	341
CviAII	CATG	4 cut(s)	123, 160, 364, 456
CviJI	RGCY	9 cut(s)	54, 66, 71, 164, 188, 226, 234, 470, 492
CviKI_1	RGCY	9 cut(s)	54, 66, 71, 164, 188, 226, 234, 470, 492
DdeI	CTNAG	4 cut(s)	61, 67, 222, 236
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	375, 442
EcoT14I	CCWWGG	1 cut(s)	159
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	4 cut(s)	126, 163, 367, 459
FaiI	YATR	4 cut(s)	124, 161, 365, 457
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	4 cut(s)	122, 159, 363, 455
FauI	CCCGC	1 cut(s)	368
Fnu4HI	GCNGC	6 cut(s)	55, 165, 168, 209, 212, 345
Fsp4HI	GCNGC	6 cut(s)	55, 165, 168, 209, 212, 345
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	4 cut(s)	38, 116, 336, 358
GluI	GCNGC	6 cut(s)	55, 165, 168, 209, 212, 345
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	2 cut(s)	274, 297
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	4 cut(s)	39, 117, 337, 359
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	4 cut(s)	126, 163, 367, 459
Hin6I	GCGC	4 cut(s)	37, 115, 335, 357
HinP1I	GCGC	4 cut(s)	37, 115, 335, 357
HinfI	GANTC	4 cut(s)	43, 101, 306, 430
HpaII	CCGG	2 cut(s)	274, 297
Hpy188I	TCNGA	2 cut(s)	86, 239
Hpy188III	TCNNGA	3 cut(s)	141, 297, 398
Hpy99I	CGWCG	3 cut(s)	335, 404, 407
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	76, 110, 312
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 341, 448, 467
HpyF3I	CTNAG	4 cut(s)	61, 67, 222, 236
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	4 cut(s)	126, 163, 367, 459
HspAI	GCGC	4 cut(s)	37, 115, 335, 357
KasI	GGCGCC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	429, 470
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	16
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	292
MfeI	CAATTG	1 cut(s)	486
MluCI	AATT	2 cut(s)	6, 486
Mly113I	GGCGCC	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	52, 300
MroI	TCCGGA	1 cut(s)	296
MseI	TTAA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	274, 297
MspR9I	CCNGG	2 cut(s)	377, 444
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	377, 444
MvnI	CGCG	3 cut(s)	37, 39, 335
MwoI	GCNNNNNNNGC	4 cut(s)	63, 341, 448, 467
NarI	GGCGCC	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	4 cut(s)	126, 163, 367, 459
NlaIV	GGNNCC	1 cut(s)	358
NmeAIII	GCCGAG	1 cut(s)	164
NspI	RCATGY	2 cut(s)	126, 367
PaeI	GCATGC	1 cut(s)	367
PciI	ACATGT	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	101, 430
PkrI	GCNGC	6 cut(s)	56, 166, 169, 210, 213, 346
PleI	GAGTC	2 cut(s)	51, 300
PluTI	GGCGCC	1 cut(s)	360
PpsI	GAGTC	2 cut(s)	51, 300
PscI	ACATGT	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	375, 442
PspGI	CCWGG	2 cut(s)	375, 442
PspN4I	GGNNCC	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	6 cut(s)	55, 165, 168, 209, 212, 345
Sau3AI	GATC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	52, 300
ScrFI	CCNGG	2 cut(s)	377, 444
SetI	ASST	7 cut(s)	52, 73, 138, 228, 294, 448, 472
SfaNI	GCATC	2 cut(s)	429, 470
SfcI	CTRYAG	1 cut(s)	310
SfoI	GGCGCC	1 cut(s)	358
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	2 cut(s)	6, 486
SsiI	CCGC	9 cut(s)	165, 168, 206, 209, 212, 255, 317, 345, 361
SspDI	GGCGCC	1 cut(s)	356
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	375, 442
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	46
TasI	AATT	2 cut(s)	6, 486
TauI	GCSGC	5 cut(s)	167, 170, 211, 214, 347
TfiI	GAWTC	2 cut(s)	101, 430
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	4 cut(s)	112, 117, 182, 418
TseI	GCWGC	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	4 cut(s)	112, 117, 182, 418
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	2 cut(s)	126, 367
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.