Rh7AG063600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006894
Physical Location & Seq
Forward (+)
4410730 .. 4413051
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG063600.1

Sequence Viewer

Length: 441 bp
ATGGTGTCAATCCACTTCTCCAACTCTCTCACTGCTCTTAAACCTCCTCATCTTCCTCCTTACCTCTCCGCCCTTAAACCCTCTTCTTTTCTCCACAACAAGTTTCCAAACCCAACCAAGATCAACAAATACACAACCTTTAGAGCCGAGCTCTCCCACGACGCGCCGTTCGCCGCCGCCATCGGCGCGTGCGTGCTCTCGTCGCTGGTGCTTCCGCCGGTCACTGCTCCGGCTGATGATCCTGATGCTGGTTCCGGTATTGATTCCACTGATGCTAGGTTCGCAGTCATGGGGGTTGTTAGCTTCATTCCCTACTTCAATTGGCTGGTAAAAGAAAAAAGAATACACCTTTTTTTATTTTCTTCATTTTGTTTGGAAATTGTTGTGTTTATATTTATTGGGTGTTTTGTGATTTTTGTTGGGTTGAAATGGTTATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.16

Weight (kDa)

8.49

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 164, 188
AciI CCGC 4 cut(s) 69, 174, 177, 215
AclWI GGATC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 2 cut(s) 319, 427
AluBI AGCT 2 cut(s) 151, 303
AluI AGCT 2 cut(s) 151, 303
Alw21I GWGCWC 2 cut(s) 153, 198
AlwI GGATC 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspLEI GCGC 2 cut(s) 166, 188
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 153, 198
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 151
BfaI CTAG 1 cut(s) 276
BisI GCNGC 2 cut(s) 174, 177
BlsI GCNGC 2 cut(s) 175, 178
BmiI GGNNCC 1 cut(s) 253
BmsI GCATC 2 cut(s) 235, 262
BplI GAGNNNNNCTC 2 cut(s) 135, 167
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse118I RCCGGY 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 36
Bsh1236I CGCG 2 cut(s) 164, 188
BsiHKAI GWGCWC 2 cut(s) 153, 198
BsiSI CCGG 3 cut(s) 218, 230, 255
BslI CCNNNNNNNGG 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 153, 198
Bsp143I GATC 2 cut(s) 120, 238
BspACI CCGC 4 cut(s) 69, 174, 177, 215
BspFNI CGCG 2 cut(s) 164, 188
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 2 cut(s) 120, 238
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 190, 194
BstFNI CGCG 2 cut(s) 164, 188
BstHHI GCGC 2 cut(s) 166, 188
BstKTI GATC 2 cut(s) 123, 241
BstMBI GATC 2 cut(s) 120, 238
BstMWI GCNNNNNNNGC 4 cut(s) 170, 185, 202, 281
BstUI CGCG 2 cut(s) 164, 188
BtsI GCAGTG 2 cut(s) 30, 222
BtsIMutI CAGTG 3 cut(s) 30, 222, 267
Cac8I GCNNGC 2 cut(s) 190, 194
CfoI GCGC 2 cut(s) 166, 188
Cfr10I RCCGGY 1 cut(s) 217
CseI GACGC 1 cut(s) 170
CviAII CATG 1 cut(s) 289
CviJI RGCY 5 cut(s) 146, 151, 233, 303, 325
CviKI_1 RGCY 5 cut(s) 146, 151, 233, 303, 325
DpnI GATC 2 cut(s) 122, 240
DpnII GATC 2 cut(s) 120, 238
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 2 cut(s) 58, 204
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 292
FaiI YATR 3 cut(s) 290, 392, 436
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 174, 177
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 174, 177
FspBI CTAG 1 cut(s) 276
GlaI GCGC 2 cut(s) 165, 187
GluI GCNGC 2 cut(s) 174, 177
HapII CCGG 3 cut(s) 218, 230, 255
HgaI GACGC 1 cut(s) 170
HhaI GCGC 2 cut(s) 166, 188
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 2 cut(s) 164, 186
HinP1I GCGC 2 cut(s) 164, 186
HinfI GANTC 1 cut(s) 263
HpaII CCGG 3 cut(s) 218, 230, 255
Hpy188III TCNNGA 1 cut(s) 242
Hpy99I CGWCG 2 cut(s) 164, 205
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 185, 202, 281
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 2 cut(s) 164, 186
Kzo9I GATC 2 cut(s) 120, 238
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 7 cut(s) 191, 231, 234, 243, 255, 268, 311
LweI GCATC 2 cut(s) 235, 262
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 122, 240
MboI GATC 2 cut(s) 120, 238
MboII GAAGA 3 cut(s) 44, 75, 354
MfeI CAATTG 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 153, 198
MluCI AATT 2 cut(s) 319, 378
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 54, 57, 66, 74, 91
MseI TTAA 2 cut(s) 39, 75
MspI CCGG 3 cut(s) 218, 230, 255
MunI CAATTG 1 cut(s) 319
MvnI CGCG 2 cut(s) 164, 188
MwoI GCNNNNNNNGC 4 cut(s) 170, 185, 202, 281
NdeII GATC 2 cut(s) 120, 238
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 175, 178
Psp124BI GAGCTC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 253
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 39, 75
SatI GCNGC 2 cut(s) 174, 177
Sau3AI GATC 2 cut(s) 120, 238
SduI GDGCHC 2 cut(s) 153, 198
SetI ASST 7 cut(s) 46, 66, 140, 153, 281, 305, 351
SfaNI GCATC 2 cut(s) 235, 262
Sse9I AATT 2 cut(s) 319, 378
SsiI CCGC 4 cut(s) 69, 174, 177, 215
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 153
TasI AATT 2 cut(s) 319, 378
TauI GCSGC 2 cut(s) 176, 179
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 39, 75
Tru9I TTAA 2 cut(s) 39, 75
TscAI CASTG 3 cut(s) 37, 229, 274
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 295, 354
TspRI CASTG 3 cut(s) 37, 229, 274
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.