Rh7BG080100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006894
Physical Location & Seq
Forward (+)
5801791 .. 5803355
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG080100.1

Sequence Viewer

Length: 597 bp
ATGGTGTCAATCCAGTTCTCCAACTCTCTTACTGCTCTTAAACCTCCTCATCTTCCTCCTTACCTCTCCGCCCTTAAACCCTCTTCTTTTCTCCACAACAAGTTTCCAAACCCAACTAAGATCACCAAATACACAACCTTTAGAGCCGAGCTATCCCACGACGCCCCGTTCGCCGCCGCCATCGGCGCGTGCGTGCTCTCGTCGCTGGTGCTTCCGCCGGTCACTGCTCCGGCTGATGATCCTGATGCTGGTTCCGGTATTGATTCCACTGATGCTAGGTTCGCAGTCATGGGGGTTGTTAGCTTCATTCCCTACTTCAATTGGCTGCTAGAAGCAAGTATTAAAAATGGAGATCTTCAGGGCTTTCAATTCTTTAATGAAGCTGCAAAGCATATTTCAGCAGTGACTAAAAAAAGAGATTATCTAGATGGGCATCAAGGTGCCTCGAAGAAGGGGAGGGAAAGAGAAAATAAGAACCTGCCATTCGGCCAAGAGCAGTCAAGAAACGAGATTGATAATTGGGGAGCTCCCAAAAGGCCCTTACAAGACCGTGACTTGAAGGAAGAGAGGGATGGCAATGAAAGAAGGAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.99

Weight (kDa)

8.95

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 486
AccB1I GGYRCC 1 cut(s) 440
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 69, 174, 177, 215
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 319, 368, 559
AluBI AGCT 4 cut(s) 151, 303, 383, 527
AluI AGCT 4 cut(s) 151, 303, 383, 527
Alw21I GWGCWC 2 cut(s) 198, 529
AlwI GGATC 1 cut(s) 233
AoxI GGCC 2 cut(s) 487, 536
ApeKI GCWGC 2 cut(s) 325, 383
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 537
AsuHPI GGTGA 1 cut(s) 115
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 2 cut(s) 198, 529
BbvI GCAGC 2 cut(s) 312, 370
BccI CCATC 3 cut(s) 188, 422, 566
BfaI CTAG 4 cut(s) 276, 329, 425, 595
BfuAI ACCTGC 1 cut(s) 486
BglII AGATCT 1 cut(s) 352
BisI GCNGC 4 cut(s) 174, 177, 326, 384
BlsI GCNGC 4 cut(s) 175, 178, 327, 385
BmgT120I GGNCC 1 cut(s) 537
BmiI GGNNCC 2 cut(s) 253, 442
BmsI GCATC 3 cut(s) 235, 262, 442
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 583
Bse8I GATNNNNATC 1 cut(s) 432
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 583
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 312, 370
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 489, 538
BshNI GGYRCC 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 198, 529
BsiSI CCGG 3 cut(s) 218, 230, 255
BslI CCNNNNNNNGG 1 cut(s) 248
BsnI GGCC 2 cut(s) 489, 538
Bsp1286I GDGCHC 2 cut(s) 198, 529
Bsp143I GATC 3 cut(s) 120, 238, 352
BspACI CCGC 4 cut(s) 69, 174, 177, 215
BspANI GGCC 2 cut(s) 489, 538
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 253, 442
BspMI ACCTGC 1 cut(s) 486
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 3 cut(s) 120, 238, 352
BssNI GRCGYC 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 2 cut(s) 88, 558
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 190, 194
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 577
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 3 cut(s) 123, 241, 355
BstMBI GATC 3 cut(s) 120, 238, 352
BstMWI GCNNNNNNNGC 4 cut(s) 170, 185, 202, 281
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 312, 370
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 2 cut(s) 489, 538
BtsCI GGATG 1 cut(s) 577
BtsI GCAGTG 2 cut(s) 222, 408
BtsIMutI CAGTG 3 cut(s) 222, 267, 408
BveI ACCTGC 1 cut(s) 486
Cac8I GCNNGC 2 cut(s) 190, 194
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 537
CseI GACGC 1 cut(s) 170
CviAII CATG 1 cut(s) 289
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 122, 240, 354
DpnII GATC 3 cut(s) 120, 238, 352
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 88, 558
EarI CTCTTC 2 cut(s) 88, 558
EciI GGCGGA 2 cut(s) 58, 204
Ecl136II GAGCTC 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 529
FaeI CATG 1 cut(s) 292
FaiI YATR 2 cut(s) 290, 393
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 4 cut(s) 174, 177, 326, 384
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 4 cut(s) 174, 177, 326, 384
FspBI CTAG 4 cut(s) 276, 329, 425, 595
GlaI GCGC 1 cut(s) 187
GluI GCNGC 4 cut(s) 174, 177, 326, 384
HaeIII GGCC 2 cut(s) 489, 538
HapII CCGG 3 cut(s) 218, 230, 255
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 1 cut(s) 263
HpaII CCGG 3 cut(s) 218, 230, 255
HphI GGTGA 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 242, 425, 501
Hpy99I CGWCG 2 cut(s) 164, 205
HpyAV CCTTC 3 cut(s) 445, 553, 579
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 185, 202, 281
HpyF3I CTNAG 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 3 cut(s) 120, 238, 352
LmnI GCTCC 3 cut(s) 232, 524, 532
LpnPI CCDG 9 cut(s) 26, 191, 231, 234, 243, 255, 268, 344, 491
Lsp1109I GCAGC 2 cut(s) 312, 370
LweI GCATC 3 cut(s) 235, 262, 442
MaeI CTAG 4 cut(s) 276, 329, 425, 595
MaeIII GTNAC 3 cut(s) 220, 403, 551
MalI GATC 3 cut(s) 122, 240, 354
MboI GATC 3 cut(s) 120, 238, 352
MboII GAAGA 5 cut(s) 44, 75, 347, 460, 575
MfeI CAATTG 1 cut(s) 319
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 198, 529
MluCI AATT 3 cut(s) 319, 368, 517
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 8 cut(s) 54, 57, 66, 74, 91, 450, 454, 561
MseI TTAA 4 cut(s) 39, 75, 342, 375
MslI CAYNNNNRTG 1 cut(s) 438
MspI CCGG 3 cut(s) 218, 230, 255
MunI CAATTG 1 cut(s) 319
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 170, 185, 202, 281
NdeII GATC 3 cut(s) 120, 238, 352
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 2 cut(s) 253, 442
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 3 cut(s) 220, 403, 551
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 4 cut(s) 175, 178, 327, 385
Psp124BI GAGCTC 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 253, 442
PspPI GGNCC 1 cut(s) 537
PsuI RGATCY 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 438
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 4 cut(s) 39, 75, 342, 375
SatI GCNGC 4 cut(s) 174, 177, 326, 384
Sau3AI GATC 3 cut(s) 120, 238, 352
Sau96I GGNCC 1 cut(s) 537
SduI GDGCHC 2 cut(s) 198, 529
SfaNI GCATC 3 cut(s) 235, 262, 442
SmiMI CAYNNNNRTG 1 cut(s) 438
Sse9I AATT 3 cut(s) 319, 368, 517
SsiI CCGC 4 cut(s) 69, 174, 177, 215
SspMI CTAG 4 cut(s) 276, 329, 425, 595
SstI GAGCTC 1 cut(s) 529
TaaI ACNGT 1 cut(s) 551
TaqI TCGA 1 cut(s) 446
TasI AATT 3 cut(s) 319, 368, 517
TauI GCSGC 2 cut(s) 176, 179
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 4 cut(s) 39, 75, 342, 375
Tru9I TTAA 4 cut(s) 39, 75, 342, 375
TscAI CASTG 3 cut(s) 229, 274, 408
TseFI GTSAC 3 cut(s) 220, 403, 551
TseI GCWGC 2 cut(s) 325, 383
Tsp45I GTSAC 3 cut(s) 220, 403, 551
TspDTI ATGAA 3 cut(s) 295, 393, 594
TspRI CASTG 3 cut(s) 229, 274, 408
XbaI TCTAGA 1 cut(s) 424
XspI CTAG 4 cut(s) 276, 329, 425, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.