Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Reverse (-)

20026222 .. 20028150

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1125100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCCGCCGCAATCCACTGCTCCTCCGCCCTCCACTCCCTAAAACCGCCGCAGCTTCCTGCTCAGCTCTCTAGCCTCAGACCCTCTCTCCTCTCCGCCAACAAACACCCAAACCGGAGGAAGAACAATAACCTCTCCGGATACAGACTCTGCAGAGCGGAGTTCTCAAACGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCATGCTCTCGTCCCTGGTGCTTCCTGTCAGCACTCCCGACGACGATGACAGTGGGGGTTCGCTGATGGATTCCACCGACGCCAGGTTTGCCGTCATGGGCATCGTCAGCTTCATTCCCTACTTCAATTGGCTGAGTTGGATTTTTGCTTGGCTGGATACCGGAAAACGGCGGTATGCGGTGTATGCGCTTGTGTACTTGGCTCCCTACCTGAGGACGAATTTGTCGCTGTCGCCTGAGGAGAGCTGGCTGCCTGTTGCTAGCATCGTTTTCTGCATTATTCATGTCCAGCTGGAAGCAAGTATTAAAAATGGGGATCTTCAGGGCTTTCAATTCTTTAATGAGGCTGCAAAGCATCTCTCGTCAACTGCTAGAAGGAAAGATCGTCAGAGTGGGTATCAAGGAACCTCCGAGGAGGGGACGAAGAAGGAAAATAAGAACCTTCCATCCAGTGAAGAACAATCGAGAAACGGGATTGATGATTGGGGAGCTCCCAAGAGGCCCTTACAAGATCGTGAGCGTGCCAATGTCGATTGGGAAGAAAATGAAAGGAGGAAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.42

Weight (kDa)

8.32

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	158
AccII	CGCG	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	137
AclWI	GGATC	1 cut(s)	525
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	2 cut(s)	198, 282
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	4 cut(s)	285, 369, 414, 618
AgsI	TTSAA	2 cut(s)	328, 533
AjnI	CCWGG	2 cut(s)	216, 284
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	6 cut(s)	55, 67, 312, 447, 493, 692
AluI	AGCT	6 cut(s)	55, 67, 312, 447, 493, 692
Alw21I	GWGCWC	1 cut(s)	694
AlwI	GGATC	1 cut(s)	525
AlwNI	CAGNNNCTG	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	2 cut(s)	3, 701
ApeKI	GCWGC	3 cut(s)	52, 451, 548
ApoI	RAATTY	1 cut(s)	421
ArsI	GACNNNNNNTTYG	4 cut(s)	164, 196, 272, 304
AspLEI	GCGC	3 cut(s)	178, 200, 391
AspS9I	GGNCC	1 cut(s)	702
AsuNHI	GCTAGC	1 cut(s)	461
AxyI	CCTNAGG	2 cut(s)	413, 438
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	694
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	3 cut(s)	64, 438, 535
BccI	CCATC	3 cut(s)	200, 262, 655
BceAI	ACGGC	3 cut(s)	163, 278, 386
BciT130I	CCWGG	2 cut(s)	218, 286
BciVI	GTATCC	2 cut(s)	134, 352
BfaI	CTAG	4 cut(s)	72, 462, 573, 763
BfmI	CTRYAG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	2 cut(s)	134, 352
BisI	GCNGC	8 cut(s)	6, 9, 50, 53, 186, 189, 452, 549
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	8 cut(s)	7, 10, 51, 54, 187, 190, 453, 550
Bme1390I	CCNGG	2 cut(s)	218, 286
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	3 cut(s)	199, 405, 607
BmrFI	CCNGG	2 cut(s)	218, 286
BmsI	GCATC	3 cut(s)	312, 474, 565
BmtI	GCTAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	198, 282
BsaJI	CCNNGG	2 cut(s)	216, 612
BsaWI	WCCGGW	3 cut(s)	114, 137, 362
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 72, 102
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 369, 414, 618
Bse1I	ACTGG	1 cut(s)	651
Bse21I	CCTNAGG	2 cut(s)	413, 438
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	218, 286
BseDI	CCNNGG	2 cut(s)	216, 612
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	4 cut(s)	285, 369, 414, 618
BseMII	CTCAG	5 cut(s)	77, 91, 326, 404, 429
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	4 cut(s)	13, 80, 455, 629
BseXI	GCAGC	3 cut(s)	64, 438, 535
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	5, 703
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	694
BsiSI	CCGG	3 cut(s)	115, 138, 363
BslFI	GGGAC	2 cut(s)	199, 634
BslI	CCNNNNNNNGG	4 cut(s)	285, 369, 414, 618
BsmFI	GGGAC	2 cut(s)	199, 634
BsnI	GGCC	2 cut(s)	5, 703
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	517, 583, 712
Bsp1720I	GCTNAGC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	5, 703
BspCNI	CTCAG	5 cut(s)	76, 90, 327, 405, 430
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	199, 405, 607
BspMAI	CTGCAG	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	2 cut(s)	216, 612
BssMI	GATC	3 cut(s)	517, 583, 712
BssNI	GRCGYC	2 cut(s)	198, 282
Bst2UI	CCWGG	2 cut(s)	218, 286
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	198, 282
BstC8I	GCNNGC	5 cut(s)	202, 206, 449, 463, 723
BstDEI	CTNAG	5 cut(s)	63, 77, 335, 413, 438
BstENI	CCTNNNNNAGG	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	3 cut(s)	178, 200, 391
BstKTI	GATC	3 cut(s)	520, 586, 715
BstMBI	GATC	3 cut(s)	517, 583, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 197, 290, 309, 386
BstNI	CCWGG	2 cut(s)	218, 286
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	216, 284
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	64, 438, 535
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
Bsu36I	CCTNAGG	2 cut(s)	413, 438
BsuI	GTATCC	2 cut(s)	134, 352
BsuRI	GGCC	2 cut(s)	5, 703
BtsCI	GGATG	1 cut(s)	647
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	3 cut(s)	16, 259, 658
Cac8I	GCNNGC	5 cut(s)	202, 206, 449, 463, 723
CaiI	CAGNNNCTG	1 cut(s)	150
CfoI	GCGC	3 cut(s)	178, 200, 391
Cfr13I	GGNCC	1 cut(s)	702
CseI	GACGC	2 cut(s)	182, 290
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	205, 298, 485
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	5 cut(s)	63, 77, 335, 413, 438
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	3 cut(s)	519, 585, 714
DpnII	GATC	3 cut(s)	517, 583, 712
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	16, 85
Ecl136II	GAGCTC	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	506
Eco81I	CCTNAGG	2 cut(s)	413, 438
EcoICRI	GAGCTC	1 cut(s)	692
EcoNI	CCTNNNNNAGG	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	702
EcoRII	CCWGG	2 cut(s)	216, 284
EcoT38I	GRGCYC	1 cut(s)	694
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaeI	CATG	3 cut(s)	208, 301, 488
FaiI	YATR	5 cut(s)	206, 299, 378, 387, 486
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	2 cut(s)	199, 634
FatI	CATG	3 cut(s)	204, 297, 484
Fnu4HI	GCNGC	8 cut(s)	6, 9, 50, 53, 186, 189, 452, 549
FokI	GGATG	1 cut(s)	634
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	8 cut(s)	6, 9, 50, 53, 186, 189, 452, 549
FspBI	CTAG	4 cut(s)	72, 462, 573, 763
GlaI	GCGC	3 cut(s)	177, 199, 390
GluI	GCNGC	8 cut(s)	6, 9, 50, 53, 186, 189, 452, 549
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	5, 703
HapII	CCGG	3 cut(s)	115, 138, 363
HgaI	GACGC	2 cut(s)	182, 290
HhaI	GCGC	3 cut(s)	178, 200, 391
Hin1I	GRCGYC	2 cut(s)	198, 282
Hin1II	CATG	3 cut(s)	208, 301, 488
Hin6I	GCGC	3 cut(s)	176, 198, 389
HinP1I	GCGC	3 cut(s)	176, 198, 389
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	2 cut(s)	147, 272
HpaII	CCGG	3 cut(s)	115, 138, 363
Hpy166II	GTNNAC	2 cut(s)	397, 567
Hpy188I	TCNGA	3 cut(s)	80, 591, 613
Hpy188III	TCNNGA	4 cut(s)	138, 239, 666, 716
Hpy8I	GTNNAC	2 cut(s)	397, 567
Hpy99I	CGWCG	4 cut(s)	176, 245, 248, 284
HpyAV	CCTTC	3 cut(s)	570, 622, 653
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	4 cut(s)	153, 204, 477, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 197, 290, 309, 386
HpyF3I	CTNAG	5 cut(s)	63, 77, 335, 413, 438
Hsp92I	GRCGYC	2 cut(s)	198, 282
Hsp92II	CATG	3 cut(s)	208, 301, 488
HspAI	GCGC	3 cut(s)	176, 198, 389
KasI	GGCGCC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	517, 583, 712
LmnI	GCTCC	4 cut(s)	26, 409, 689, 697
Lsp1109I	GCAGC	3 cut(s)	64, 438, 535
LweI	GCATC	3 cut(s)	312, 474, 565
MaeI	CTAG	4 cut(s)	72, 462, 573, 763
MalI	GATC	3 cut(s)	519, 585, 714
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	3 cut(s)	517, 583, 712
MboII	GAAGA	5 cut(s)	133, 512, 637, 668, 752
MfeI	CAATTG	1 cut(s)	328
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	3 cut(s)	328, 421, 533
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	320
MroI	TCCGGA	1 cut(s)	137
MseI	TTAA	2 cut(s)	507, 540
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	3 cut(s)	115, 138, 363
MspR9I	CCNGG	2 cut(s)	218, 286
MunI	CAATTG	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	218, 286
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	5 cut(s)	182, 197, 290, 309, 386
NarI	GGCGCC	1 cut(s)	198
NdeII	GATC	3 cut(s)	517, 583, 712
NheI	GCTAGC	1 cut(s)	461
NlaIII	CATG	3 cut(s)	208, 301, 488
NlaIV	GGNNCC	3 cut(s)	199, 405, 607
NspI	RCATGY	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	8 cut(s)	7, 10, 51, 54, 187, 190, 453, 550
PleI	GAGTC	1 cut(s)	141
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	694
Psp6I	CCWGG	2 cut(s)	216, 284
PspGI	CCWGG	2 cut(s)	216, 284
PspN4I	GGNNCC	3 cut(s)	199, 405, 607
PspPI	GGNCC	1 cut(s)	702
PstI	CTGCAG	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	694
SaqAI	TTAA	2 cut(s)	507, 540
SatI	GCNGC	8 cut(s)	6, 9, 50, 53, 186, 189, 452, 549
Sau3AI	GATC	3 cut(s)	517, 583, 712
Sau96I	GGNCC	1 cut(s)	702
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	218, 286
SduI	GDGCHC	1 cut(s)	694
SfaNI	GCATC	3 cut(s)	312, 474, 565
SfcI	CTRYAG	1 cut(s)	151
SfoI	GGCGCC	1 cut(s)	199
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	328, 421, 533
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	4 cut(s)	72, 462, 573, 763
SstI	GAGCTC	1 cut(s)	694
StyD4I	CCNGG	2 cut(s)	216, 284
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	665, 732
TasI	AATT	3 cut(s)	328, 421, 533
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	5 cut(s)	8, 11, 52, 188, 191
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	507, 540
Tru9I	TTAA	2 cut(s)	507, 540
TscAI	CASTG	3 cut(s)	23, 259, 658
TseI	GCWGC	3 cut(s)	52, 451, 548
TspDTI	ATGAA	3 cut(s)	304, 473, 762
TspRI	CASTG	3 cut(s)	23, 259, 658
XagI	CCTNNNNNAGG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	4 cut(s)	72, 462, 573, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.