Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000024.1

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Forward (+)

187704 .. 189266

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000024.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggtgtcaatccacttctccaactctctcactgctcttaaacctcctcatcttcctccgtacctctccgcccttaaaccctcttcttttctccacaacaagtttccaaacccaaccaagatcaccaaatacacagcctttagagccgagctctcccacgacgcgccgttcgccgccgccatcggcgcgtgcgtgctctcgtcgctggtgcttccgccggtctctgctccggcagacgatcctgatgctgattccggtattgactccaccgacgctaggttcgcagtcatgggggttgttagcttcattccctacttcaattggctgagttgggtttttgcttggctggattctgggaaaaggcgctatgctgtgtatgcacttgtgtatttgatcccttacatcagatcaaatttgaatttgtctcctgaggagagctggctacctattgctagcattgttttctgcattattcatgtccaggggagggaaagagaaaataagaacctgccattcggccaagagcagtcaagaaacgagattgataattggggagctcccaaaaggcccttacaagaccgtgacttgaaggaagatagggatgacaatgaaagaaggaaacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.51

Weight (kDa)

7.01

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	516
AccII	CGCG	2 cut(s)	164, 188
AciI	CCGC	4 cut(s)	69, 174, 177, 215
AclWI	GGATC	2 cut(s)	233, 388
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	2 cut(s)	412, 418
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	276, 487
AgsI	TTSAA	3 cut(s)	319, 418, 589
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	4 cut(s)	151, 303, 438, 557
AluI	AGCT	4 cut(s)	151, 303, 438, 557
Alw21I	GWGCWC	3 cut(s)	153, 198, 559
Alw26I	GTCTC	2 cut(s)	226, 429
AlwI	GGATC	2 cut(s)	233, 388
AoxI	GGCC	2 cut(s)	517, 566
ApoI	RAATTY	2 cut(s)	412, 418
ArsI	GACNNNNNNTTYG	4 cut(s)	152, 184, 263, 295
AspLEI	GCGC	3 cut(s)	166, 188, 366
AspS9I	GGNCC	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	115
AsuNHI	GCTAGC	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	429
BanII	GRGCYC	2 cut(s)	153, 559
Bbv12I	GWGCWC	3 cut(s)	153, 198, 559
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	482
BcoDI	GTCTC	2 cut(s)	226, 429
BfaI	CTAG	3 cut(s)	276, 453, 625
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	2 cut(s)	174, 177
BlsI	GCNGC	2 cut(s)	175, 178
Bme1390I	CCNGG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	235
BmtI	GCTAGC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	481
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 487
Bse118I	RCCGGY	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	2 cut(s)	276, 487
BseMII	CTCAG	2 cut(s)	317, 420
BseRI	GAGGAG	2 cut(s)	36, 446
Bsh1236I	CGCG	2 cut(s)	164, 188
BshFI	GGCC	2 cut(s)	519, 568
BsiHKAI	GWGCWC	3 cut(s)	153, 198, 559
BsiSI	CCGG	3 cut(s)	218, 230, 255
BslI	CCNNNNNNNGG	2 cut(s)	276, 487
BsmAI	GTCTC	2 cut(s)	226, 429
BsnI	GGCC	2 cut(s)	519, 568
Bso31I	GGTCTC	1 cut(s)	226
Bsp1286I	GDGCHC	3 cut(s)	153, 198, 559
Bsp143I	GATC	4 cut(s)	120, 238, 393, 407
BspACI	CCGC	4 cut(s)	69, 174, 177, 215
BspANI	GGCC	2 cut(s)	519, 568
BspCNI	CTCAG	2 cut(s)	318, 421
BspFNI	CGCG	2 cut(s)	164, 188
BspMI	ACCTGC	1 cut(s)	516
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	233, 388
BspTNI	GGTCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	4 cut(s)	120, 238, 393, 407
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	4 cut(s)	190, 194, 440, 454
BstDEI	CTNAG	2 cut(s)	326, 429
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	2 cut(s)	164, 188
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	3 cut(s)	166, 188, 366
BstKTI	GATC	4 cut(s)	123, 241, 396, 410
BstMAI	GTCTC	2 cut(s)	226, 429
BstMBI	GATC	4 cut(s)	120, 238, 393, 407
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 170, 185, 202, 281, 377
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstUI	CGCG	2 cut(s)	164, 188
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	519, 568
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	4 cut(s)	190, 194, 440, 454
CfoI	GCGC	3 cut(s)	166, 188, 366
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	567
CseI	GACGC	2 cut(s)	170, 281
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	2 cut(s)	289, 476
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	326, 429
DpnI	GATC	4 cut(s)	122, 240, 395, 409
DpnII	GATC	4 cut(s)	120, 238, 393, 407
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	2 cut(s)	58, 204
Ecl136II	GAGCTC	2 cut(s)	151, 557
Eco24I	GRGCYC	2 cut(s)	153, 559
Eco31I	GGTCTC	1 cut(s)	226
Eco53kI	GAGCTC	2 cut(s)	151, 557
Eco81I	CCTNAGG	1 cut(s)	429
EcoICRI	GAGCTC	2 cut(s)	151, 557
EcoO109I	RGGNCCY	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	480
EcoT38I	GRGCYC	2 cut(s)	153, 559
FaeI	CATG	2 cut(s)	292, 479
FaiI	YATR	4 cut(s)	290, 369, 378, 477
FatI	CATG	2 cut(s)	288, 475
Fnu4HI	GCNGC	2 cut(s)	174, 177
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	2 cut(s)	153, 559
Fsp4HI	GCNGC	2 cut(s)	174, 177
FspBI	CTAG	3 cut(s)	276, 453, 625
GlaI	GCGC	3 cut(s)	165, 187, 365
GluI	GCNGC	2 cut(s)	174, 177
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	519, 568
HapII	CCGG	3 cut(s)	218, 230, 255
HgaI	GACGC	2 cut(s)	170, 281
HhaI	GCGC	3 cut(s)	166, 188, 366
Hin1II	CATG	2 cut(s)	292, 479
Hin6I	GCGC	3 cut(s)	164, 186, 364
HinP1I	GCGC	3 cut(s)	164, 186, 364
HinfI	GANTC	3 cut(s)	251, 263, 350
HpaII	CCGG	3 cut(s)	218, 230, 255
HphI	GGTGA	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	3 cut(s)	242, 428, 531
Hpy99I	CGWCG	3 cut(s)	164, 205, 275
HpyAV	CCTTC	2 cut(s)	583, 609
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4V	TGCA	2 cut(s)	380, 468
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 170, 185, 202, 281, 377
HpyF3I	CTNAG	2 cut(s)	326, 429
Hsp92II	CATG	2 cut(s)	292, 479
HspAI	GCGC	3 cut(s)	164, 186, 364
Kzo9I	GATC	4 cut(s)	120, 238, 393, 407
LmnI	GCTCC	3 cut(s)	232, 554, 562
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	3 cut(s)	276, 453, 625
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	4 cut(s)	122, 240, 395, 409
MboI	GATC	4 cut(s)	120, 238, 393, 407
MboII	GAAGA	3 cut(s)	44, 75, 605
MfeI	CAATTG	1 cut(s)	319
MhlI	GDGCHC	3 cut(s)	153, 198, 559
MluCI	AATT	4 cut(s)	319, 412, 418, 547
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	7 cut(s)	54, 57, 66, 74, 91, 424, 480
MseI	TTAA	2 cut(s)	39, 75
MspI	CCGG	3 cut(s)	218, 230, 255
MspR9I	CCNGG	1 cut(s)	482
MunI	CAATTG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	2 cut(s)	164, 188
MwoI	GCNNNNNNNGC	6 cut(s)	143, 170, 185, 202, 281, 377
NdeII	GATC	4 cut(s)	120, 238, 393, 407
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	292, 479
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	251, 350
PkrI	GCNGC	2 cut(s)	175, 178
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp124BI	GAGCTC	2 cut(s)	153, 559
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	567
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	2 cut(s)	153, 559
SaqAI	TTAA	2 cut(s)	39, 75
SatI	GCNGC	2 cut(s)	174, 177
Sau3AI	GATC	4 cut(s)	120, 238, 393, 407
Sau96I	GGNCC	1 cut(s)	567
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	3 cut(s)	153, 198, 559
SetI	ASST	9 cut(s)	46, 66, 153, 281, 305, 440, 448, 510, 559
SfaNI	GCATC	1 cut(s)	235
Sse9I	AATT	4 cut(s)	319, 412, 418, 547
SsiI	CCGC	4 cut(s)	69, 174, 177, 215
SspMI	CTAG	3 cut(s)	276, 453, 625
SstI	GAGCTC	2 cut(s)	153, 559
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	581
TasI	AATT	4 cut(s)	319, 412, 418, 547
TauI	GCSGC	2 cut(s)	176, 179
TfiI	GAWTC	2 cut(s)	251, 350
Tru1I	TTAA	2 cut(s)	39, 75
Tru9I	TTAA	2 cut(s)	39, 75
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	3 cut(s)	295, 464, 624
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	2 cut(s)	412, 418
XspI	CTAG	3 cut(s)	276, 453, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.