Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Forward (+)

62765948 .. 62767518

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTGTCAATCCACTTCTCCAACTCTCTTAGTACTGCTCTTAAACCTCCTCATCTTTCTCCTTACCTCTCCGCCCTTAAACCCTCTTCGTTTCTCCACAGCAAGTTTCCAAACCCAACTAAGACCACCAAATACACAGCCTTTAGAGCCGAGCTCTCGCACGACGCGCCGTTCGCCGCCGCAATCGGCGCGTGCGTGCTCTCGTCGCTGGTGCTTCCGCCGGTCTCTGCTCCGGCAGACGATCCTGATGCTGGTTCCGGTATTGACTCCACCGATGCTAGGTTCGCAGTCATGGGGGTTGTTAGCTTCATTCCCTACTTCAATTGGCTGAGTTGGGTTTTTGCTTGGCTGGATACTGGGAAAAGGCGCTATGCTGTGTATGCACTTGTGTATTTGATCCCCTACATCAGATCAAATTTGAATTTGTCTCCTGAGGAGAGCTGGCTGCCTATTGCTAGCATTGTTTTCTGCATTATTCATGTCCAGCTAGAAGCAAGTATTAAAAATGGAGATCTTCAGGGCTTTCAATTCTTTAATGAAGCTGCAAAGCATATTTCAGCAGTGACTAAAAAAAGAGATTATCTAGATGGGCATCAAGGTGCCTCGAAGAAGGGGAGGGAAAGAGAAAATAAGAACCTGCCATTCGGCCAAGAGCAGTCAAGAAACGAGATTGATGATTGGGGAGCTCCCAAAAGGCCCTTACAAGACCGTGACATAAAGGAAGATAGGGATGACAATGAAAGAAGGAAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.13

Weight (kDa)

8.43

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	645
AccB1I	GGYRCC	1 cut(s)	599
AccII	CGCG	2 cut(s)	167, 191
AciI	CCGC	4 cut(s)	72, 177, 180, 218
AclWI	GGATC	2 cut(s)	236, 391
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	2 cut(s)	415, 421
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	251, 279
AgsI	TTSAA	3 cut(s)	322, 421, 527
AluBI	AGCT	6 cut(s)	154, 306, 441, 487, 542, 686
AluI	AGCT	6 cut(s)	154, 306, 441, 487, 542, 686
Alw21I	GWGCWC	3 cut(s)	156, 201, 688
Alw26I	GTCTC	2 cut(s)	229, 432
AlwI	GGATC	2 cut(s)	236, 391
AoxI	GGCC	2 cut(s)	646, 695
ApeKI	GCWGC	2 cut(s)	445, 542
ApoI	RAATTY	2 cut(s)	415, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspLEI	GCGC	3 cut(s)	169, 191, 369
AspS9I	GGNCC	1 cut(s)	696
AsuNHI	GCTAGC	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	2 cut(s)	156, 688
Bbv12I	GWGCWC	3 cut(s)	156, 201, 688
BbvI	GCAGC	2 cut(s)	432, 529
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciVI	GTATCC	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	229, 432
BfaI	CTAG	5 cut(s)	279, 456, 488, 584, 754
BfoI	RGCGCY	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	346
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	4 cut(s)	177, 180, 446, 543
BlsI	GCNGC	4 cut(s)	178, 181, 447, 544
BmcAI	AGTACT	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	256, 601
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	3 cut(s)	238, 265, 601
BmtI	GCTAGC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BsaBI	GATNNNNATC	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 279
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	361
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	591
BseGI	GGATG	1 cut(s)	736
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	251, 279
BseMII	CTCAG	2 cut(s)	320, 423
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	2 cut(s)	39, 449
BseXI	GCAGC	2 cut(s)	432, 529
Bsh1236I	CGCG	2 cut(s)	167, 191
BshFI	GGCC	2 cut(s)	648, 697
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	3 cut(s)	156, 201, 688
BsiSI	CCGG	3 cut(s)	221, 233, 258
BslI	CCNNNNNNNGG	2 cut(s)	251, 279
BsmAI	GTCTC	2 cut(s)	229, 432
BsnI	GGCC	2 cut(s)	648, 697
Bso31I	GGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	3 cut(s)	156, 201, 688
Bsp143I	GATC	4 cut(s)	241, 396, 410, 511
BspACI	CCGC	4 cut(s)	72, 177, 180, 218
BspANI	GGCC	2 cut(s)	648, 697
BspCNI	CTCAG	2 cut(s)	321, 424
BspFNI	CGCG	2 cut(s)	167, 191
BspLI	GGNNCC	2 cut(s)	256, 601
BspMI	ACCTGC	1 cut(s)	645
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	236, 391
BspT107I	GGYRCC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	220
BssMI	GATC	4 cut(s)	241, 396, 410, 511
Bst4CI	ACNGT	1 cut(s)	710
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	4 cut(s)	193, 197, 443, 457
BstDEI	CTNAG	4 cut(s)	29, 120, 329, 432
BstF5I	GGATG	1 cut(s)	736
BstFNI	CGCG	2 cut(s)	167, 191
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	3 cut(s)	169, 191, 369
BstKTI	GATC	4 cut(s)	244, 399, 413, 514
BstMAI	GTCTC	2 cut(s)	229, 432
BstMBI	GATC	4 cut(s)	241, 396, 410, 511
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 166, 173, 188, 205, 284, 380
BstUI	CGCG	2 cut(s)	167, 191
BstV1I	GCAGC	2 cut(s)	432, 529
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	648, 697
BtsCI	GGATG	1 cut(s)	736
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	567
BveI	ACCTGC	1 cut(s)	645
Cac8I	GCNNGC	4 cut(s)	193, 197, 443, 457
CfoI	GCGC	3 cut(s)	169, 191, 369
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	696
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	292, 479
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	4 cut(s)	29, 120, 329, 432
DpnI	GATC	4 cut(s)	243, 398, 412, 513
DpnII	GATC	4 cut(s)	241, 396, 410, 511
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	2 cut(s)	61, 207
Ecl136II	GAGCTC	2 cut(s)	154, 686
Eco24I	GRGCYC	2 cut(s)	156, 688
Eco31I	GGTCTC	1 cut(s)	229
Eco53kI	GAGCTC	2 cut(s)	154, 686
Eco57I	CTGAAG	1 cut(s)	500
Eco81I	CCTNAGG	1 cut(s)	432
EcoICRI	GAGCTC	2 cut(s)	154, 686
EcoO109I	RGGNCCY	1 cut(s)	696
EcoT38I	GRGCYC	2 cut(s)	156, 688
FaeI	CATG	2 cut(s)	295, 482
FaiI	YATR	6 cut(s)	293, 372, 381, 480, 552, 716
FatI	CATG	2 cut(s)	291, 478
Fnu4HI	GCNGC	4 cut(s)	177, 180, 446, 543
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	2 cut(s)	156, 688
Fsp4HI	GCNGC	4 cut(s)	177, 180, 446, 543
FspBI	CTAG	5 cut(s)	279, 456, 488, 584, 754
GlaI	GCGC	3 cut(s)	168, 190, 368
GluI	GCNGC	4 cut(s)	177, 180, 446, 543
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	648, 697
HapII	CCGG	3 cut(s)	221, 233, 258
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	3 cut(s)	169, 191, 369
Hin1II	CATG	2 cut(s)	295, 482
Hin6I	GCGC	3 cut(s)	167, 189, 367
HinP1I	GCGC	3 cut(s)	167, 189, 367
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	3 cut(s)	221, 233, 258
Hpy188I	TCNGA	1 cut(s)	410
Hpy188III	TCNNGA	4 cut(s)	245, 431, 584, 660
Hpy99I	CGWCG	2 cut(s)	167, 208
HpyAV	CCTTC	2 cut(s)	604, 738
HpyCH4III	ACNGT	1 cut(s)	710
HpyCH4V	TGCA	3 cut(s)	383, 471, 545
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 166, 173, 188, 205, 284, 380
HpyF3I	CTNAG	4 cut(s)	29, 120, 329, 432
Hsp92II	CATG	2 cut(s)	295, 482
HspAI	GCGC	3 cut(s)	167, 189, 367
Kzo9I	GATC	4 cut(s)	241, 396, 410, 511
LmnI	GCTCC	3 cut(s)	235, 683, 691
Lsp1109I	GCAGC	2 cut(s)	432, 529
LweI	GCATC	3 cut(s)	238, 265, 601
MaeI	CTAG	5 cut(s)	279, 456, 488, 584, 754
MaeIII	GTNAC	2 cut(s)	562, 710
MalI	GATC	4 cut(s)	243, 398, 412, 513
MboI	GATC	4 cut(s)	241, 396, 410, 511
MboII	GAAGA	4 cut(s)	78, 506, 619, 734
MfeI	CAATTG	1 cut(s)	322
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	3 cut(s)	156, 201, 688
MluCI	AATT	4 cut(s)	322, 415, 421, 527
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	7 cut(s)	57, 60, 77, 94, 427, 609, 613
MseI	TTAA	4 cut(s)	42, 78, 501, 534
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	3 cut(s)	221, 233, 258
MunI	CAATTG	1 cut(s)	322
MvnI	CGCG	2 cut(s)	167, 191
MwoI	GCNNNNNNNGC	7 cut(s)	146, 166, 173, 188, 205, 284, 380
NdeII	GATC	4 cut(s)	241, 396, 410, 511
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	2 cut(s)	295, 482
NlaIV	GGNNCC	2 cut(s)	256, 601
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	562, 710
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	178, 181, 447, 544
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Psp124BI	GAGCTC	2 cut(s)	156, 688
PspN4I	GGNNCC	2 cut(s)	256, 601
PspPI	GGNCC	1 cut(s)	696
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	2 cut(s)	156, 688
SaqAI	TTAA	4 cut(s)	42, 78, 501, 534
SatI	GCNGC	4 cut(s)	177, 180, 446, 543
Sau3AI	GATC	4 cut(s)	241, 396, 410, 511
Sau96I	GGNCC	1 cut(s)	696
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	156, 201, 688
SfaNI	GCATC	3 cut(s)	238, 265, 601
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	4 cut(s)	322, 415, 421, 527
SsiI	CCGC	4 cut(s)	72, 177, 180, 218
SspMI	CTAG	5 cut(s)	279, 456, 488, 584, 754
SstI	GAGCTC	2 cut(s)	156, 688
TaaI	ACNGT	1 cut(s)	710
TaqI	TCGA	1 cut(s)	605
TasI	AATT	4 cut(s)	322, 415, 421, 527
TatI	WGTACW	1 cut(s)	32
TauI	GCSGC	2 cut(s)	179, 182
Tru1I	TTAA	4 cut(s)	42, 78, 501, 534
Tru9I	TTAA	4 cut(s)	42, 78, 501, 534
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	2 cut(s)	562, 710
TseI	GCWGC	2 cut(s)	445, 542
Tsp45I	GTSAC	2 cut(s)	562, 710
TspDTI	ATGAA	4 cut(s)	298, 467, 552, 753
TspRI	CASTG	1 cut(s)	567
XapI	RAATTY	2 cut(s)	415, 421
XbaI	TCTAGA	1 cut(s)	583
XspI	CTAG	5 cut(s)	279, 456, 488, 584, 754
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.