Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Reverse (-)

16141224 .. 16142732

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCGCAATCCACTACTCCTCCACTCTCCATTCTCTAAAACCGCCGCCGCCGCTTCCTCCTCAGCTCTCCAGCCTCAGACCCTCTCTCCTCTCCACCAGCAAACACCCAAACAGTAAGAAGAACAAAAAGCTCACCGGATACAGACCCTCCAGAGCGGAGTTCTCAAACGACGCGCCGTTCGTCGCCGCCATTGGCGCCTGCATGCTCTCGTCTCTGGTGCTTCCCGCCAGCACTCCCGATGACGATGCCGAAGGCGGTTCGGCGATGGATTCCACCGATGCCAGGTTCGCCGTCATGGGCGTCATCAGCTTCATTCCCTACTTCAATTGGCTGAGTTGGATTTTTGCTTGGTTGGATACCGGAAAACGGCGGTATGCGGTGTATGCGCTTGTGTACTTGGTTCCCTACCTGAGGACGAATTTGTCGTTGTCACCTGAGGAGAGCTGGCTGCCCATTGCTAGCATCGTTTTCTGCATTATTCATGTCCAGCTGGAAACAAGTATTAAAAATGGCGATCTTCAGGGCTTTCAATTCTTTAACGAGGCTGCAAAGCATCTCTCGTCAACAACTAGTAGGAAAGATCATCGGAGTGGGTATCAAGGAACCTCTGAGGAGGGGAAGAAAAGAGGAAATAAGAACCTTCCATCCAGTGATGAACAATCGAGAAATGAGGTCGATGATTGGGGAGTTCCCAAGAAGCCCTCACAAGATCGTGAGCGCTCGAATGAAGAAGAAAATGAAAGAAGGAAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.19

Weight (kDa)

8.76

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	158
AccII	CGCG	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	2 cut(s)	198, 303
AfaI	GTAC	1 cut(s)	398
AfeI	AGCGCT	1 cut(s)	722
AfiI	CCNNNNNNNGG	3 cut(s)	285, 369, 414
AgsI	TTSAA	2 cut(s)	328, 533
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	284
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	5 cut(s)	67, 133, 312, 447, 493
AluI	AGCT	5 cut(s)	67, 133, 312, 447, 493
Alw26I	GTCTC	1 cut(s)	219
Aor51HI	AGCGCT	1 cut(s)	722
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	451, 548
ApoI	RAATTY	1 cut(s)	421
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	4 cut(s)	178, 200, 391, 723
AsuHPI	GGTGA	2 cut(s)	127, 426
AsuNHI	GCTAGC	1 cut(s)	461
AxyI	CCTNAGG	2 cut(s)	413, 438
BanI	GGYRCC	1 cut(s)	197
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	438, 535
BccI	CCATC	2 cut(s)	262, 655
BceAI	ACGGC	3 cut(s)	163, 278, 386
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	1 cut(s)	286
BciVI	GTATCC	2 cut(s)	134, 352
BcoDI	GTCTC	1 cut(s)	219
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	3 cut(s)	462, 573, 757
BfoI	RGCGCY	2 cut(s)	201, 724
BfuI	GTATCC	2 cut(s)	134, 352
BisI	GCNGC	7 cut(s)	6, 47, 50, 53, 189, 452, 549
BlsI	GCNGC	7 cut(s)	7, 48, 51, 54, 190, 453, 550
Bme1390I	CCNGG	1 cut(s)	286
BmiI	GGNNCC	3 cut(s)	199, 405, 607
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	4 cut(s)	238, 271, 474, 565
BmtI	GCTAGC	1 cut(s)	465
BpmI	CTGGAG	2 cut(s)	55, 136
Bpu10I	CCTNAGC	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	198, 303
BsaWI	WCCGGW	2 cut(s)	137, 362
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 72, 102, 134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 369, 414
Bse1I	ACTGG	1 cut(s)	651
Bse21I	CCTNAGG	2 cut(s)	413, 438
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	3 cut(s)	285, 369, 414
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	6 cut(s)	77, 91, 326, 404, 429, 603
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	5 cut(s)	10, 51, 80, 455, 629
BseXI	GCAGC	2 cut(s)	438, 535
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	138, 363
BslI	CCNNNNNNNGG	3 cut(s)	285, 369, 414
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	517, 583, 712
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	6 cut(s)	76, 90, 327, 405, 430, 604
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	199, 405, 607
BspOI	GCTAGC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	651
BssMI	GATC	3 cut(s)	517, 583, 712
BssNI	GRCGYC	2 cut(s)	198, 303
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	116
BstACI	GRCGYC	2 cut(s)	198, 303
BstC8I	GCNNGC	5 cut(s)	202, 206, 232, 449, 463
BstDEI	CTNAG	6 cut(s)	63, 77, 335, 413, 438, 612
BstENI	CCTNNNNNAGG	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	2 cut(s)	201, 724
BstHHI	GCGC	4 cut(s)	178, 200, 391, 723
BstKTI	GATC	3 cut(s)	520, 586, 715
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	3 cut(s)	517, 583, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 197, 290, 309, 386
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	438, 535
Bsu36I	CCTNAGG	2 cut(s)	413, 438
BsuI	GTATCC	2 cut(s)	134, 352
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	5 cut(s)	202, 206, 232, 449, 463
CfoI	GCGC	4 cut(s)	178, 200, 391, 723
CseI	GACGC	2 cut(s)	182, 292
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	205, 298, 485
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	6 cut(s)	63, 77, 335, 413, 438, 612
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	3 cut(s)	519, 585, 714
DpnII	GATC	3 cut(s)	517, 583, 712
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	3
Eco47III	AGCGCT	1 cut(s)	722
Eco57I	CTGAAG	1 cut(s)	506
Eco81I	CCTNAGG	2 cut(s)	413, 438
EcoNI	CCTNNNNNAGG	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	3 cut(s)	208, 301, 488
FaiI	YATR	5 cut(s)	206, 299, 378, 387, 486
FatI	CATG	3 cut(s)	204, 297, 484
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	7 cut(s)	6, 47, 50, 53, 189, 452, 549
FokI	GGATG	1 cut(s)	634
Fsp4HI	GCNGC	7 cut(s)	6, 47, 50, 53, 189, 452, 549
FspBI	CTAG	3 cut(s)	462, 573, 757
GlaI	GCGC	4 cut(s)	177, 199, 390, 722
GluI	GCNGC	7 cut(s)	6, 47, 50, 53, 189, 452, 549
GsuI	CTGGAG	2 cut(s)	55, 136
HaeII	RGCGCY	2 cut(s)	201, 724
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	138, 363
HgaI	GACGC	2 cut(s)	182, 292
HhaI	GCGC	4 cut(s)	178, 200, 391, 723
Hin1I	GRCGYC	2 cut(s)	198, 303
Hin1II	CATG	3 cut(s)	208, 301, 488
Hin6I	GCGC	4 cut(s)	176, 198, 389, 721
HinP1I	GCGC	4 cut(s)	176, 198, 389, 721
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	2 cut(s)	138, 363
HphI	GGTGA	2 cut(s)	127, 426
Hpy166II	GTNNAC	2 cut(s)	397, 567
Hpy188I	TCNGA	3 cut(s)	80, 591, 613
Hpy188III	TCNNGA	4 cut(s)	153, 239, 666, 716
Hpy8I	GTNNAC	2 cut(s)	397, 567
Hpy99I	CGWCG	2 cut(s)	176, 188
HpyAV	CCTTC	3 cut(s)	248, 653, 741
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	204, 477, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 197, 290, 309, 386
HpyF3I	CTNAG	6 cut(s)	63, 77, 335, 413, 438, 612
Hsp92I	GRCGYC	2 cut(s)	198, 303
Hsp92II	CATG	3 cut(s)	208, 301, 488
HspAI	GCGC	4 cut(s)	176, 198, 389, 721
KasI	GGCGCC	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	517, 583, 712
Lsp1109I	GCAGC	2 cut(s)	438, 535
LweI	GCATC	4 cut(s)	238, 271, 474, 565
MaeI	CTAG	3 cut(s)	462, 573, 757
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	3 cut(s)	519, 585, 714
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	3 cut(s)	517, 583, 712
MboII	GAAGA	5 cut(s)	133, 512, 634, 743, 746
MfeI	CAATTG	1 cut(s)	328
MluCI	AATT	3 cut(s)	328, 421, 533
Mly113I	GGCGCC	1 cut(s)	198
MmeI	TCCRAC	2 cut(s)	320, 336
MseI	TTAA	2 cut(s)	507, 540
MslI	CAYNNNNRTG	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	2 cut(s)	138, 363
MspR9I	CCNGG	1 cut(s)	286
MunI	CAATTG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	5 cut(s)	52, 197, 290, 309, 386
NarI	GGCGCC	1 cut(s)	198
NdeII	GATC	3 cut(s)	517, 583, 712
NheI	GCTAGC	1 cut(s)	461
NlaIII	CATG	3 cut(s)	208, 301, 488
NlaIV	GGNNCC	3 cut(s)	199, 405, 607
NmuCI	GTSAC	1 cut(s)	432
NspI	RCATGY	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 425
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	7 cut(s)	7, 48, 51, 54, 190, 453, 550
PluTI	GGCGCC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	3 cut(s)	199, 405, 607
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	507, 540
SatI	GCNGC	7 cut(s)	6, 47, 50, 53, 189, 452, 549
Sau3AI	GATC	3 cut(s)	517, 583, 712
ScrFI	CCNGG	1 cut(s)	286
SfaNI	GCATC	4 cut(s)	238, 271, 474, 565
SfoI	GGCGCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	591
SpeI	ACTAGT	1 cut(s)	572
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	328, 421, 533
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	3 cut(s)	462, 573, 757
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	665, 678, 725
TasI	AATT	3 cut(s)	328, 421, 533
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	5 cut(s)	8, 49, 52, 55, 191
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	507, 540
Tru9I	TTAA	2 cut(s)	507, 540
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	2 cut(s)	451, 548
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	5 cut(s)	304, 473, 672, 744, 756
TspRI	CASTG	1 cut(s)	658
XagI	CCTNNNNNAGG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	3 cut(s)	462, 573, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.