Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Reverse (-)

12497917 .. 12500294

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G128800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTTTCAATCCACTTCTCTTCTACTATCCACCGTCTGAAACCACCACCGCCTCATCCCTCTCAGCTCTGCAACCTCAAACCCTCTTTCCTTTCCAAAAGCAACAAATCCCCAAACACGAGGAAGAAGATCGGCACCAGATACAGAACGTGCAGAGCGGAGTTCTCAAACGACGCACCGTTTGCTGCAGCCATCGGCGCCTGCATGCTCTCTTCTCTGGTGCTTCCGGTCACTACTCCAGAGGACGATGGCGGCGGCGGTTCGCCTATGGATTCTACCGATGCCAGGTTTGCAGTCATGGGCATCGTTAGCTTCATTCCCTACTTCAATTGGCTGAGTTGGATTTTTGCGTTTCTGGATACCGGGAAAAGGCGTTATGCGGTGTATGCGCTTGTCTACTTGGTTCCCTACCTCAGGTCGAATTTGTCATTGTCTCCTGAGGAGAGCTGGCTGCCTATTGCTAGCATTGTTCTGTGCATTATTCATGTCCAGCTGGAAGCCAGTATTAAAAATGGAGATCTTCAGGGCTTTCAATTGTTTAGCGAGGCTGCAAAGCATACATCATTCACGAGTAGAAAGAAAGATCTGACTGGGCATGAAGGGACCTCTGAGGAGGGGAGGAAAAGAGAAAATAAGAACCTGCCATCCAGCGAAGAGATTGGGAGGTGGGGAGTTCCCAAGAATCCTTTACAAGATCATGAACACTCGAATGAAGATTGGGATGATGATGAAAGAAGCAAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.76

Weight (kDa)

7.74

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	648
AccB1I	GGYRCC	2 cut(s)	134, 197
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	6 cut(s)	50, 158, 252, 255, 258, 380
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	3 cut(s)	285, 369, 414
AgsI	TTSAA	3 cut(s)	9, 328, 533
AjnI	CCWGG	1 cut(s)	284
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	4 cut(s)	67, 312, 447, 493
AluI	AGCT	4 cut(s)	67, 312, 447, 493
Alw26I	GTCTC	1 cut(s)	438
ApeKI	GCWGC	4 cut(s)	185, 188, 451, 548
ApoI	RAATTY	1 cut(s)	421
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	2 cut(s)	200, 391
AspS9I	GGNCC	1 cut(s)	603
AsuC2I	CCSGG	1 cut(s)	364
AsuNHI	GCTAGC	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	603
AxyI	CCTNAGG	2 cut(s)	413, 438
BanI	GGYRCC	2 cut(s)	134, 197
BauI	CACGAG	2 cut(s)	118, 568
BbvI	GCAGC	4 cut(s)	172, 200, 438, 535
BccI	CCATC	3 cut(s)	200, 242, 652
BciT130I	CCWGG	1 cut(s)	286
BciVI	GTATCC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	2 cut(s)	462, 745
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	352
BglII	AGATCT	2 cut(s)	517, 583
BisI	GCNGC	6 cut(s)	186, 189, 253, 256, 452, 549
BlsI	GCNGC	6 cut(s)	187, 190, 254, 257, 453, 550
Bme1390I	CCNGG	2 cut(s)	286, 364
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	4 cut(s)	136, 199, 405, 604
BmrFI	CCNGG	2 cut(s)	286, 364
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	271, 312
BmtI	GCTAGC	1 cut(s)	465
BmuI	ACTGGG	1 cut(s)	600
BpmI	CTGGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 369, 414
Bse1I	ACTGG	2 cut(s)	501, 595
Bse21I	CCTNAGG	2 cut(s)	413, 438
BseBI	CCWGG	1 cut(s)	286
BseGI	GGATG	3 cut(s)	55, 644, 727
BseLI	CCNNNNNNNGG	3 cut(s)	285, 369, 414
BseMII	CTCAG	5 cut(s)	77, 326, 427, 429, 600
BseNI	ACTGG	2 cut(s)	501, 595
BseRI	GAGGAG	2 cut(s)	455, 626
BseXI	GCAGC	4 cut(s)	172, 200, 438, 535
BsgI	GTGCAG	1 cut(s)	172
BshNI	GGYRCC	2 cut(s)	134, 197
BsiSI	CCGG	2 cut(s)	227, 363
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	3 cut(s)	285, 369, 414
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	129, 517, 583, 694
BspACI	CCGC	6 cut(s)	50, 158, 252, 255, 258, 380
BspCNI	CTCAG	5 cut(s)	76, 327, 426, 430, 601
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	4 cut(s)	136, 199, 405, 604
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	648
BspOI	GCTAGC	1 cut(s)	465
BspT107I	GGYRCC	2 cut(s)	134, 197
BsrBI	CCGCTC	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	501, 595
BssMI	GATC	4 cut(s)	129, 517, 583, 694
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	2 cut(s)	118, 568
Bst2BI	CACGAG	2 cut(s)	118, 568
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	35, 180
Bst6I	CTCTTC	3 cut(s)	25, 217, 648
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	202, 206, 449, 463
BstDEI	CTNAG	5 cut(s)	63, 335, 413, 438, 609
BstENI	CCTNNNNNAGG	1 cut(s)	412
BstF5I	GGATG	3 cut(s)	55, 644, 727
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	200, 391
BstKTI	GATC	4 cut(s)	132, 520, 586, 697
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	4 cut(s)	129, 517, 583, 694
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 197, 290, 309, 386
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	284, 362
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	4 cut(s)	172, 200, 438, 535
BstX2I	RGATCY	2 cut(s)	517, 583
BstYI	RGATCY	2 cut(s)	517, 583
Bsu36I	CCTNAGG	2 cut(s)	413, 438
BsuI	GTATCC	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	55, 644, 727
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	4 cut(s)	202, 206, 449, 463
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	2 cut(s)	200, 391
Cfr13I	GGNCC	1 cut(s)	603
CseI	GACGC	1 cut(s)	182
CviAII	CATG	5 cut(s)	205, 298, 485, 596, 698
DdeI	CTNAG	5 cut(s)	63, 335, 413, 438, 609
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	4 cut(s)	131, 519, 585, 696
DpnII	GATC	4 cut(s)	129, 517, 583, 694
Eam1104I	CTCTTC	3 cut(s)	25, 217, 648
EarI	CTCTTC	3 cut(s)	25, 217, 648
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	506
Eco81I	CCTNAGG	2 cut(s)	413, 438
EcoNI	CCTNNNNNAGG	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaeI	CATG	5 cut(s)	208, 301, 488, 599, 701
FaiI	YATR	9 cut(s)	206, 269, 299, 378, 387, 486, 558, 597, 699
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	5 cut(s)	204, 297, 484, 595, 697
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	186, 189, 253, 256, 452, 549
FokI	GGATG	3 cut(s)	42, 631, 734
Fsp4HI	GCNGC	6 cut(s)	186, 189, 253, 256, 452, 549
FspBI	CTAG	2 cut(s)	462, 745
GlaI	GCGC	2 cut(s)	199, 390
GluI	GCNGC	6 cut(s)	186, 189, 253, 256, 452, 549
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	201
HapII	CCGG	2 cut(s)	227, 363
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	200, 391
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	5 cut(s)	208, 301, 488, 599, 701
Hin6I	GCGC	2 cut(s)	198, 389
HinP1I	GCGC	2 cut(s)	198, 389
HinfI	GANTC	2 cut(s)	272, 682
HpaII	CCGG	2 cut(s)	227, 363
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	39, 588, 610
Hpy188III	TCNNGA	5 cut(s)	239, 356, 437, 568, 698
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	593
HpyCH4III	ACNGT	2 cut(s)	35, 180
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	7 cut(s)	72, 153, 188, 204, 293, 477, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 197, 290, 309, 386
HpyF3I	CTNAG	5 cut(s)	63, 335, 413, 438, 609
HpySE526I	ACGT	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	208, 301, 488, 599, 701
HspAI	GCGC	2 cut(s)	198, 389
KasI	GGCGCC	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	129, 517, 583, 694
Lsp1109I	GCAGC	4 cut(s)	172, 200, 438, 535
LweI	GCATC	2 cut(s)	271, 312
MaeI	CTAG	2 cut(s)	462, 745
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	4 cut(s)	131, 519, 585, 696
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	4 cut(s)	129, 517, 583, 694
MboII	GAAGA	7 cut(s)	12, 136, 139, 204, 512, 665, 725
MfeI	CAATTG	2 cut(s)	328, 533
MflI	RGATCY	2 cut(s)	517, 583
MluCI	AATT	3 cut(s)	328, 421, 533
Mly113I	GGCGCC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	320
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	2 cut(s)	227, 363
MspR9I	CCNGG	2 cut(s)	286, 364
MunI	CAATTG	2 cut(s)	328, 533
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	5 cut(s)	182, 197, 290, 309, 386
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	4 cut(s)	129, 517, 583, 694
NheI	GCTAGC	1 cut(s)	461
NlaIII	CATG	5 cut(s)	208, 301, 488, 599, 701
NlaIV	GGNNCC	4 cut(s)	136, 199, 405, 604
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	697
PfeI	GAWTC	2 cut(s)	272, 682
PkrI	GCNGC	6 cut(s)	187, 190, 254, 257, 453, 550
PluTI	GGCGCC	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	4 cut(s)	136, 199, 405, 604
PspPI	GGNCC	1 cut(s)	603
PspPPI	RGGWCCY	1 cut(s)	603
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	517, 583
PvuII	CAGCTG	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	6 cut(s)	186, 189, 253, 256, 452, 549
Sau3AI	GATC	4 cut(s)	129, 517, 583, 694
Sau96I	GGNCC	1 cut(s)	603
ScrFI	CCNGG	2 cut(s)	286, 364
SfaNI	GCATC	2 cut(s)	271, 312
SfcI	CTRYAG	1 cut(s)	186
SfoI	GGCGCC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	708
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	328, 421, 533
SsiI	CCGC	6 cut(s)	50, 158, 252, 255, 258, 380
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	462, 745
StyD4I	CCNGG	2 cut(s)	284, 362
TaaI	ACNGT	2 cut(s)	35, 180
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	419, 707
TasI	AATT	3 cut(s)	328, 421, 533
TauI	GCSGC	2 cut(s)	255, 258
TfiI	GAWTC	2 cut(s)	272, 682
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	4 cut(s)	185, 188, 451, 548
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	6 cut(s)	304, 473, 612, 714, 726, 744
VpaK11BI	GGWCC	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	2 cut(s)	462, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.