Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Reverse (-)

59894722 .. 59898308

Gene Structure 3587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0476900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGCTCATCAACCAATGGAAACTACCCTCATTTCCTCTGTTTCTACTATTCACCTCTGCTTTCCTCTCATTTTGCACCACCTCAGTTACCAGTTCTAGTTCTTCAGTGAACTCATCAAACCCCTCAGATGCTGCTGCGCTTCTTGATTTCAAAGCAAAAGCTGATTTGAGCAGCGCACTTCCCTTCTCAAAGTCAAACACCACCCTCCATTTCTGTCAATGGGCTGGGATCCAATGCGCGAAATCGAGAGTGGTCCGGTTAGTAATCCAAGACTTGGATCTCGGCGGTGTTTTCGCACCGGACACTCTGACCCGCCTGGACCAGCTCCGAGTACTCAGTCTCCAGAATGACTCGCTCACCGGACCGGTTCCCGATCTCTCCGGACTCATCAACCTCAAAACCCTCTTCCTCGATCACAACTCATTCTCCGCTTCTCTTCCGCATTCCCTCTCCTCTCTCCATAGGCTTCGAACCCTTGATTTCTCTTATAACAACCTCACCGGTCCATTGCCCGAATGGCTGAGCGGTCTGAACCGGCTCTACTATCTCCGCCTCGAGTGGAACCGGTTCAACGGAACCGTCCCGCCTCTGAACCAGTCCTCTCTCCAAACCTTTAACGTCTCCGGAAACAACCTCACCGGCGTCGTACCGGTCACTCCGACTCTCCTCCGCTTCGGACCGTCATCGTTCTTGTGGAACCCTAGTCTTTGCGGCGAGATCATTCGCATGGAATGCCACCCAAACGCGCCGTTTTTCCGTCCGGCGACTCCGTCTACAGTTCCCGCAGCTCCGTCGCCTAGTCGCGCACTCGGGCTGAGAACGGCTCAGGGCGTTGAGTTGACTCAGCCGTGTCACAAGAAGCACAAGAGAACCGCCGTCCTCATCGGCTTCTCTTCCGCCGTGTTCGTCCTGATCTGCTCGATCCTCTGCTTCGTCCTGGCCGTCAAGAAACAGAGGAAGCACGTCAAAAAGACGGACTTGTCCTCCTCGGACGACGCGGCGGCGGCGCAGGCGGTGCAGATGGAGCAGGAGGAGCTGGAGCAGAAGGTGAAGAGAGTTCAGGGGATTCAGGTGGTGAAGAGCGGGAGCTTGTTGTTCTGTGCGGGCGAGGCGCAGGTGTACTCGCTGGACCAGCTGATGAGGGCGTCGGCGGAGCTTTTGGGAAGAGGGACGCTGGGGTCCACCTACAAGGCGGTGCTGGACAACCGTCTGATCGTCTGCGTTAAACGGCTGGATGCTAGTGTGTTGGAGGGTACGGGTAGGGAAGCCTTCGAGAGGCACTTGGAATCGGTGGGAGGGCTCCGGCATCCGAACCTGGTTCCGCTCCGAGCTTATTTTCAGGCCAAAGAAGAGAGGCTCCTCATCTACGATTACCAGCCCAATGGCAGCCTCTTCTCTCTCATTCATGGTTCAAAATCAACGAGGGCAAAGCCTCTGCACTGGACATCATGCTTGAAAATAGCAGAGGACGTAGCGCAAGGCCTCTCTTACATCCACCAAGCATGGAGGCTTGTCCACGGAAATCTCAAGTCCTCCAACGTGCTACTTGGCTCCGACTTTGAGGCATGTGTCACTGACTACTGCCTCTCCGTTCTCGCTACTAATCTTCCGCCATGGGAGGAGGAGAACCCTGATTCTGCTGCTGCCTATAAAGCACCAGAGACTCGCCATTCAAATCACTCACCAACTCCCAAGTCTGATGTGTATGCATATGGTATTTTGCTGGTGGAGCTTCTCACTGGGAGGCCTCCGTCGCAGCACTTAGTTTCAGTTCCCCTGAATGACATGATGCAATGGGTGAGGTCCGTGAGGGAAGAATCAGATGCTGGTGGTGGTGGGGATTCAGAAGAGAGTAGTGATAAGATGGGAATGCTGCTGGACGTGGCCATAACTTGTAGATCAGCTTCGCCGGAGCAGAGACCGACTATGTGGCAGGTTTTGAAGATGTTGCAGGAGATTAAACAGACTGTGGCCGCGGATGAAACTGAGACCGAGTTAATGGGATTATGTCCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

672

Amino Acids

73.77

Weight (kDa)

7.56

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	103 - 189	1.3e-06	Leucine-rich repeat region
LRR_8	PF13855	131 - 190	2e-09	Leucine rich repeat
Pkinase	PF00069	385 - 648	1.2e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	385 - 649	5e-29	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AarI	CACCTGC	1 cut(s)	1105
AasI	GACNNNNNNGTC	2 cut(s)	979, 1177
Acc36I	ACCTGC	2 cut(s)	1105, 1924
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccBSI	CCGCTC	3 cut(s)	525, 1083, 1324
AccI	GTMKAC	1 cut(s)	773
AccII	CGCG	5 cut(s)	239, 746, 804, 998, 1976
AccIII	TCCGGA	2 cut(s)	380, 623
AclWI	GGATC	4 cut(s)	223, 236, 285, 916
AcoI	YGGCCR	3 cut(s)	939, 1884, 1971
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	2 cut(s)	642, 1145
AfaI	GTAC	4 cut(s)	333, 648, 1121, 1255
AfiI	CCNNNNNNNGG	2 cut(s)	274, 1275
AgeI	ACCGGT	4 cut(s)	364, 500, 564, 649
AgsI	TTSAA	6 cut(s)	151, 571, 1413, 1456, 1674, 1942
AjiI	CACGTC	2 cut(s)	964, 1882
AjnI	CCWGG	4 cut(s)	315, 936, 1314, 2011
Alw26I	GTCTC	5 cut(s)	344, 625, 1655, 1912, 1982
AlwI	GGATC	4 cut(s)	223, 236, 285, 916
AlwNI	CAGNNNCTG	2 cut(s)	131, 1826
Ama87I	CYCGRG	2 cut(s)	554, 809
Aor13HI	TCCGGA	2 cut(s)	380, 623
AoxI	GGCC	6 cut(s)	939, 1341, 1480, 1745, 1884, 1971
ApeKI	GCWGC	9 cut(s)	131, 134, 171, 785, 1386, 1640, 1643, 1756, 1873
AsiGI	ACCGGT	4 cut(s)	364, 500, 564, 649
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	8 cut(s)	139, 176, 239, 748, 806, 1009, 1114, 1477
AspS9I	GGNCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
AsuHPI	GGTGA	8 cut(s)	43, 349, 490, 628, 1060, 1087, 1674, 1810
AsuII	TTCGAA	1 cut(s)	469
AvaI	CYCGRG	2 cut(s)	554, 809
AvaII	GGWCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
BalI	TGGCCA	1 cut(s)	1886
BamHI	GGATCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	1302
BarI	GAAGNNNNNNTAC	2 cut(s)	1888, 1920
BbvI	GCAGC	9 cut(s)	118, 121, 183, 797, 1398, 1627, 1630, 1768, 1860
BccI	CCATC	2 cut(s)	1015, 1858
BceAI	ACGGC	7 cut(s)	733, 832, 837, 860, 884, 926, 1244
BcgI	CGANNNNNNTGC	2 cut(s)	774, 808
BciT130I	CCWGG	4 cut(s)	317, 938, 1316, 2013
BcoDI	GTCTC	5 cut(s)	344, 625, 1655, 1912, 1982
BfaI	CTAG	5 cut(s)	96, 702, 798, 1239, 2017
BfmI	CTRYAG	1 cut(s)	774
BfuAI	ACCTGC	2 cut(s)	1105, 1924
BglI	GCCNNNNNGGC	1 cut(s)	517
BlpI	GCTNAGC	1 cut(s)	521
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	4 cut(s)	317, 938, 1316, 2013
Bme18I	GGWCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
BmeT110I	CYCGRG	2 cut(s)	554, 809
BmgBI	CACGTC	2 cut(s)	964, 1882
BmgT120I	GGNCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
BmrFI	CCNGG	4 cut(s)	317, 938, 1316, 2013
BmrI	ACTGGG	1 cut(s)	1749
BmsI	GCATC	5 cut(s)	118, 1225, 1315, 1779, 1813
BmuI	ACTGGG	1 cut(s)	1749
BoxI	GACNNNNGTC	1 cut(s)	1206
BplI	GAGNNNNNCTC	2 cut(s)	808, 840
BpmI	CTGGAG	2 cut(s)	326, 1058
Bpu10I	CCTNAGC	1 cut(s)	825
Bpu1102I	GCTNAGC	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	1511
BsaHI	GRCGYC	2 cut(s)	642, 1145
BsaI	GGTCTC	2 cut(s)	1912, 1982
BsaJI	CCNNGG	4 cut(s)	987, 1516, 1613, 1974
BsaWI	WCCGGW	9 cut(s)	255, 298, 359, 364, 380, 500, 564, 623, 649
BsaXI	ACNNNNNCTCC	8 cut(s)	324, 354, 410, 440, 968, 998, 1571, 1601
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 1275
Bse118I	RCCGGY	6 cut(s)	364, 500, 534, 564, 638, 649
Bse1I	ACTGG	4 cut(s)	90, 595, 1445, 1744
Bse3DI	GCAATG	2 cut(s)	506, 1799
BseAI	TCCGGA	2 cut(s)	380, 623
BseBI	CCWGG	4 cut(s)	317, 938, 1316, 2013
BseDI	CCNNGG	4 cut(s)	987, 1516, 1613, 1974
BseGI	GGATG	4 cut(s)	1240, 1306, 1491, 1984
BseLI	CCNNNNNNNGG	2 cut(s)	274, 1275
BseMI	GCAATG	2 cut(s)	506, 1799
BseMII	CTCAG	8 cut(s)	96, 138, 349, 512, 806, 839, 857, 1977
BseNI	ACTGG	4 cut(s)	90, 595, 1445, 1744
BseRI	GAGGAG	7 cut(s)	442, 656, 976, 1046, 1349, 1634, 1637
BseXI	GCAGC	9 cut(s)	118, 121, 183, 797, 1398, 1627, 1630, 1768, 1860
BseYI	CCCAGC	2 cut(s)	224, 1174
BsgI	GTGCAG	2 cut(s)	1037, 1421
Bsh1236I	CGCG	5 cut(s)	239, 746, 804, 998, 1976
BshFI	GGCC	6 cut(s)	941, 1343, 1482, 1747, 1886, 1973
BshTI	ACCGGT	4 cut(s)	364, 500, 564, 649
BsiHKCI	CYCGRG	2 cut(s)	554, 809
BslFI	GGGAC	2 cut(s)	566, 1183
BslI	CCNNNNNNNGG	2 cut(s)	274, 1275
BsmAI	GTCTC	5 cut(s)	344, 625, 1655, 1912, 1982
BsmBI	CGTCTC	1 cut(s)	625
BsmFI	GGGAC	2 cut(s)	566, 1183
BsmI	GAATGC	3 cut(s)	442, 737, 1875
BsnI	GGCC	6 cut(s)	941, 1343, 1482, 1747, 1886, 1973
Bso31I	GGTCTC	2 cut(s)	1912, 1982
BsoBI	CYCGRG	2 cut(s)	554, 809
Bsp119I	TTCGAA	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	1302
Bsp13I	TCCGGA	2 cut(s)	380, 623
Bsp143I	GATC	9 cut(s)	228, 277, 373, 412, 717, 912, 921, 1212, 1898
Bsp1720I	GCTNAGC	1 cut(s)	521
Bsp19I	CCATGG	1 cut(s)	1613
BspANI	GGCC	6 cut(s)	941, 1343, 1482, 1747, 1886, 1973
BspCNI	CTCAG	8 cut(s)	95, 137, 348, 513, 807, 838, 856, 1978
BspEI	TCCGGA	2 cut(s)	380, 623
BspFNI	CGCG	5 cut(s)	239, 746, 804, 998, 1976
BspMI	ACCTGC	2 cut(s)	1105, 1924
BspPI	GGATC	4 cut(s)	223, 236, 285, 916
BspQI	GCTCTTC	1 cut(s)	1073
BspT104I	TTCGAA	1 cut(s)	469
BspTNI	GGTCTC	2 cut(s)	1912, 1982
BsrBI	CCGCTC	3 cut(s)	525, 1083, 1324
BsrDI	GCAATG	2 cut(s)	506, 1799
BsrFI	RCCGGY	6 cut(s)	364, 500, 534, 564, 638, 649
BsrI	ACTGG	4 cut(s)	90, 595, 1445, 1744
BssAI	RCCGGY	6 cut(s)	364, 500, 534, 564, 638, 649
BssECI	CCNNGG	4 cut(s)	987, 1516, 1613, 1974
BssMI	GATC	9 cut(s)	228, 277, 373, 412, 717, 912, 921, 1212, 1898
BssNI	GRCGYC	2 cut(s)	642, 1145
BssT1I	CCWWGG	1 cut(s)	1613
Bst2UI	CCWGG	4 cut(s)	317, 938, 1316, 2013
Bst4CI	ACNGT	5 cut(s)	580, 681, 778, 1208, 1969
Bst6I	CTCTTC	9 cut(s)	410, 441, 898, 1046, 1073, 1159, 1344, 1397, 1842
BstACI	GRCGYC	2 cut(s)	642, 1145
BstAPI	GCANNNNNTGC	2 cut(s)	732, 1015
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	1011, 1105
BstDEI	CTNAG	9 cut(s)	82, 124, 335, 521, 815, 825, 843, 1762, 1986
BstDSI	CCRYGG	3 cut(s)	1516, 1613, 1974
BstENI	CCTNNNNNAGG	1 cut(s)	1273
BstF5I	GGATG	4 cut(s)	1240, 1306, 1491, 1984
BstFNI	CGCG	5 cut(s)	239, 746, 804, 998, 1976
BstHHI	GCGC	8 cut(s)	139, 176, 239, 748, 806, 1009, 1114, 1477
BstKTI	GATC	9 cut(s)	231, 280, 376, 415, 720, 915, 924, 1215, 1901
BstMAI	GTCTC	5 cut(s)	344, 625, 1655, 1912, 1982
BstMBI	GATC	9 cut(s)	228, 277, 373, 412, 717, 912, 921, 1212, 1898
BstNI	CCWGG	4 cut(s)	317, 938, 1316, 2013
BstNSI	RCATGY	1 cut(s)	1569
BstPAI	GACNNNNGTC	1 cut(s)	1206
BstSCI	CCNGG	4 cut(s)	315, 936, 1314, 2011
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	5 cut(s)	239, 746, 804, 998, 1976
BstV1I	GCAGC	9 cut(s)	118, 121, 183, 797, 1398, 1627, 1630, 1768, 1860
BstX2I	RGATCY	2 cut(s)	228, 277
BstXI	CCANNNNNNTGG	1 cut(s)	1382
BstYI	RGATCY	2 cut(s)	228, 277
BsuRI	GGCC	6 cut(s)	941, 1343, 1482, 1747, 1886, 1973
BtgI	CCRYGG	3 cut(s)	1516, 1613, 1974
BtrI	CACGTC	2 cut(s)	964, 1882
BtsCI	GGATG	4 cut(s)	1240, 1306, 1491, 1984
BtsIMutI	CAGTG	4 cut(s)	111, 1438, 1572, 1737
BveI	ACCTGC	2 cut(s)	1105, 1924
Cac8I	GCNNGC	2 cut(s)	1011, 1105
CaiI	CAGNNNCTG	2 cut(s)	131, 1826
CfoI	GCGC	8 cut(s)	139, 176, 239, 748, 806, 1009, 1114, 1477
Cfr10I	RCCGGY	6 cut(s)	364, 500, 534, 564, 638, 649
Cfr13I	GGNCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
Cfr42I	CCGCGG	1 cut(s)	1977
CpoI	CGGWCCG	2 cut(s)	362, 677
CseI	GACGC	4 cut(s)	631, 1004, 1134, 1180
CsiI	ACCWGGT	1 cut(s)	1314
Csp6I	GTAC	4 cut(s)	332, 647, 1120, 1254
CspAI	ACCGGT	4 cut(s)	364, 500, 564, 649
CspI	CGGWCCG	2 cut(s)	362, 677
CviAII	CATG	7 cut(s)	727, 1406, 1449, 1503, 1566, 1614, 1786
CviQI	GTAC	4 cut(s)	332, 647, 1120, 1254
DdeI	CTNAG	9 cut(s)	82, 124, 335, 521, 815, 825, 843, 1762, 1986
DpnI	GATC	9 cut(s)	230, 279, 375, 414, 719, 914, 923, 1214, 1900
DpnII	GATC	9 cut(s)	228, 277, 373, 412, 717, 912, 921, 1212, 1898
DrdI	GACNNNNNNGTC	2 cut(s)	979, 1177
DseDI	GACNNNNNNGTC	2 cut(s)	979, 1177
EaeI	YGGCCR	3 cut(s)	939, 1884, 1971
Eam1104I	CTCTTC	9 cut(s)	410, 441, 898, 1046, 1073, 1159, 1344, 1397, 1842
EarI	CTCTTC	9 cut(s)	410, 441, 898, 1046, 1073, 1159, 1344, 1397, 1842
EciI	GGCGGA	4 cut(s)	539, 886, 1166, 1599
Eco130I	CCWWGG	1 cut(s)	1613
Eco147I	AGGCCT	2 cut(s)	1482, 1747
Eco24I	GRGCYC	1 cut(s)	1302
Eco31I	GGTCTC	2 cut(s)	1912, 1982
Eco47I	GGWCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
Eco57I	CTGAAG	1 cut(s)	87
Eco88I	CYCGRG	2 cut(s)	554, 809
EcoNI	CCTNNNNNAGG	1 cut(s)	1273
EcoRII	CCWGG	4 cut(s)	315, 936, 1314, 2011
EcoT14I	CCWWGG	1 cut(s)	1613
EcoT22I	ATGCAT	1 cut(s)	1711
EcoT38I	GRGCYC	1 cut(s)	1302
ErhI	CCWWGG	1 cut(s)	1613
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	7 cut(s)	730, 1409, 1452, 1506, 1569, 1617, 1789
FalI	AAGNNNNNCTT	2 cut(s)	962, 994
FaqI	GGGAC	2 cut(s)	566, 1183
FatI	CATG	7 cut(s)	726, 1405, 1448, 1502, 1565, 1613, 1785
FauI	CCCGC	5 cut(s)	320, 591, 790, 1076, 1096
FauNDI	CATATG	1 cut(s)	1711
FblI	GTMKAC	1 cut(s)	773
FokI	GGATG	4 cut(s)	1247, 1293, 1478, 1991
FriOI	GRGCYC	1 cut(s)	1302
FspBI	CTAG	5 cut(s)	96, 702, 798, 1239, 2017
GlaI	GCGC	8 cut(s)	138, 175, 238, 747, 805, 1008, 1113, 1476
GsaI	CCCAGC	2 cut(s)	228, 1178
GsuI	CTGGAG	2 cut(s)	326, 1058
HaeIII	GGCC	6 cut(s)	941, 1343, 1482, 1747, 1886, 1973
HgaI	GACGC	4 cut(s)	631, 1004, 1134, 1180
HhaI	GCGC	8 cut(s)	139, 176, 239, 748, 806, 1009, 1114, 1477
Hin1I	GRCGYC	2 cut(s)	642, 1145
Hin1II	CATG	7 cut(s)	730, 1409, 1452, 1506, 1569, 1617, 1789
Hin6I	GCGC	8 cut(s)	137, 174, 237, 746, 804, 1007, 1112, 1475
HinP1I	GCGC	8 cut(s)	137, 174, 237, 746, 804, 1007, 1112, 1475
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HphI	GGTGA	8 cut(s)	43, 349, 490, 628, 1060, 1087, 1674, 1810
Hpy166II	GTNNAC	6 cut(s)	109, 774, 840, 1120, 1182, 1516
Hpy188III	TCNNGA	9 cut(s)	143, 246, 343, 371, 381, 624, 910, 946, 1273
Hpy8I	GTNNAC	6 cut(s)	109, 774, 840, 1120, 1182, 1516
Hpy99I	CGWCG	5 cut(s)	647, 796, 998, 1150, 1756
HpyAV	CCTTC	3 cut(s)	193, 1039, 1279
HpyCH4III	ACNGT	5 cut(s)	580, 681, 778, 1208, 1969
HpyCH4IV	ACGT	5 cut(s)	618, 963, 1470, 1539, 1881
HpyCH4V	TGCA	6 cut(s)	75, 1018, 1438, 1709, 1792, 1951
HpyF3I	CTNAG	9 cut(s)	82, 124, 335, 521, 815, 825, 843, 1762, 1986
HpySE526I	ACGT	5 cut(s)	618, 963, 1470, 1539, 1881
Hsp92I	GRCGYC	2 cut(s)	642, 1145
Hsp92II	CATG	7 cut(s)	730, 1409, 1452, 1506, 1569, 1617, 1789
HspAI	GCGC	8 cut(s)	137, 174, 237, 746, 804, 1007, 1112, 1475
Kpn2I	TCCGGA	2 cut(s)	380, 623
KspI	CCGCGG	1 cut(s)	1977
Kzo9I	GATC	9 cut(s)	228, 277, 373, 412, 717, 912, 921, 1212, 1898
LguI	GCTCTTC	1 cut(s)	1073
Lsp1109I	GCAGC	9 cut(s)	118, 121, 183, 797, 1398, 1627, 1630, 1768, 1860
LweI	GCATC	5 cut(s)	118, 1225, 1315, 1779, 1813
MabI	ACCWGGT	1 cut(s)	1314
MaeI	CTAG	5 cut(s)	96, 702, 798, 1239, 2017
MaeII	ACGT	5 cut(s)	618, 963, 1470, 1539, 1881
MaeIII	GTNAC	4 cut(s)	85, 652, 851, 1570
MalI	GATC	9 cut(s)	230, 279, 375, 414, 719, 914, 923, 1214, 1900
MbiI	CCGCTC	3 cut(s)	525, 1083, 1324
MboI	GATC	9 cut(s)	228, 277, 373, 412, 717, 912, 921, 1212, 1898
MflI	RGATCY	2 cut(s)	228, 277
MhlI	GDGCHC	1 cut(s)	1302
MlsI	TGGCCA	1 cut(s)	1886
MluNI	TGGCCA	1 cut(s)	1886
MlyI	GAGTC	6 cut(s)	344, 378, 655, 760, 835, 1657
MmeI	TCCRAC	4 cut(s)	683, 1227, 1560, 1578
Mox20I	TGGCCA	1 cut(s)	1886
Mph1103I	ATGCAT	1 cut(s)	1711
MroI	TCCGGA	2 cut(s)	380, 623
MroXI	GAANNNNTTC	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	1886
MseI	TTAA	4 cut(s)	615, 1224, 1959, 1997
MslI	CAYNNNNRTG	1 cut(s)	725
Msp20I	TGGCCA	1 cut(s)	1886
MspA1I	CMGCKG	2 cut(s)	1135, 1976
MspR9I	CCNGG	4 cut(s)	317, 938, 1316, 2013
Mva1269I	GAATGC	3 cut(s)	442, 737, 1875
MvaI	CCWGG	4 cut(s)	317, 938, 1316, 2013
MvnI	CGCG	5 cut(s)	239, 746, 804, 998, 1976
NcoI	CCATGG	1 cut(s)	1613
NdeI	CATATG	1 cut(s)	1711
NdeII	GATC	9 cut(s)	228, 277, 373, 412, 717, 912, 921, 1212, 1898
NlaIII	CATG	7 cut(s)	730, 1409, 1452, 1506, 1569, 1617, 1789
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	3 cut(s)	652, 851, 1570
NsiI	ATGCAT	1 cut(s)	1711
NspI	RCATGY	1 cut(s)	1569
NspV	TTCGAA	1 cut(s)	469
PaeR7I	CTCGAG	1 cut(s)	554
PaqCI	CACCTGC	1 cut(s)	1105
PceI	AGGCCT	2 cut(s)	1482, 1747
PciSI	GCTCTTC	1 cut(s)	1073
PcsI	WCGNNNNNNNCGW	1 cut(s)	939
PctI	GAATGC	3 cut(s)	442, 737, 1875
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	5 cut(s)	1066, 1286, 1634, 1817, 1841
PflFI	GACNNNGTC	1 cut(s)	769
PflMI	CCANNNNNTGG	1 cut(s)	274
PinAI	ACCGGT	4 cut(s)	364, 500, 564, 649
PleI	GAGTC	6 cut(s)	344, 378, 655, 760, 835, 1657
PpsI	GAGTC	6 cut(s)	344, 378, 655, 760, 835, 1657
PshAI	GACNNNNGTC	1 cut(s)	1206
PsiI	TTATAA	1 cut(s)	489
Psp6I	CCWGG	4 cut(s)	315, 936, 1314, 2011
PspFI	CCCAGC	2 cut(s)	224, 1174
PspGI	CCWGG	4 cut(s)	315, 936, 1314, 2011
PspPI	GGNCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
PspXI	VCTCGAGB	1 cut(s)	554
PsrI	GAACNNNNNNTAC	2 cut(s)	524, 556
PstNI	CAGNNNCTG	2 cut(s)	131, 1826
PsuI	RGATCY	2 cut(s)	228, 277
PsyI	GACNNNGTC	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	1135
RsaI	GTAC	4 cut(s)	333, 648, 1121, 1255
RsaNI	GTAC	4 cut(s)	332, 647, 1120, 1254
RseI	CAYNNNNRTG	1 cut(s)	725
Rsr2I	CGGWCCG	2 cut(s)	362, 677
RsrII	CGGWCCG	2 cut(s)	362, 677
SacII	CCGCGG	1 cut(s)	1977
SapI	GCTCTTC	1 cut(s)	1073
SaqAI	TTAA	4 cut(s)	615, 1224, 1959, 1997
Sau3AI	GATC	9 cut(s)	228, 277, 373, 412, 717, 912, 921, 1212, 1898
Sau96I	GGNCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	6 cut(s)	344, 378, 655, 760, 835, 1657
ScrFI	CCNGG	4 cut(s)	317, 938, 1316, 2013
SduI	GDGCHC	1 cut(s)	1302
SexAI	ACCWGGT	1 cut(s)	1314
SfaNI	GCATC	5 cut(s)	118, 1225, 1315, 1779, 1813
SfcI	CTRYAG	1 cut(s)	774
Sfr274I	CTCGAG	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	1977
SfuI	TTCGAA	1 cut(s)	469
SgrAI	CRCCGGYG	1 cut(s)	638
SgrBI	CCGCGG	1 cut(s)	1977
SinI	GGWCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
SlaI	CTCGAG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	2 cut(s)	554, 1526
SmoI	CTYRAG	2 cut(s)	554, 1526
SseBI	AGGCCT	2 cut(s)	1482, 1747
SspMI	CTAG	5 cut(s)	96, 702, 798, 1239, 2017
StuI	AGGCCT	2 cut(s)	1482, 1747
StyD4I	CCNGG	4 cut(s)	315, 936, 1314, 2011
StyI	CCWWGG	1 cut(s)	1613
TaaI	ACNGT	5 cut(s)	580, 681, 778, 1208, 1969
TaiI	ACGT	5 cut(s)	621, 966, 1473, 1542, 1884
TaqI	TCGA	6 cut(s)	245, 411, 469, 555, 920, 1272
TaqII	GACCGA	2 cut(s)	1936, 2006
TatI	WGTACW	2 cut(s)	331, 1119
TauI	GCSGC	5 cut(s)	714, 1001, 1004, 1007, 1976
TfiI	GAWTC	5 cut(s)	1066, 1286, 1634, 1817, 1841
Tru1I	TTAA	4 cut(s)	615, 1224, 1959, 1997
Tru9I	TTAA	4 cut(s)	615, 1224, 1959, 1997
TscAI	CASTG	4 cut(s)	111, 1445, 1579, 1744
TseFI	GTSAC	3 cut(s)	652, 851, 1570
TseI	GCWGC	9 cut(s)	131, 134, 171, 785, 1386, 1640, 1643, 1756, 1873
Tsp45I	GTSAC	3 cut(s)	652, 851, 1570
TspDTI	ATGAA	2 cut(s)	1394, 1995
TspGWI	ACGGA	9 cut(s)	588, 746, 759, 780, 989, 1533, 1579, 1740, 1795
TspRI	CASTG	4 cut(s)	111, 1445, 1579, 1744
Tth111I	GACNNNGTC	1 cut(s)	769
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	8 cut(s)	253, 319, 362, 503, 677, 1129, 1179, 1803
XagI	CCTNNNNNAGG	1 cut(s)	1273
XceI	RCATGY	1 cut(s)	1569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XhoI	CTCGAG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	773
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	5 cut(s)	96, 702, 798, 1239, 2017
ZrmI	AGTACT	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	1711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.