Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Forward (+)

6218260 .. 6220163

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11000.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTGTCAATCCACTTCTCAAACTCTCTCATCGCTCTTAAACCTCCTCATCATCTTCATCCTCCTTACCTCTCCGCCCTTAAACCCTCTTCTTTTCTTCCCAACAAGTTTCCCAACCCAACAAAGACCACCAAATACACAACCTTTCGAGCCGAGTTACCTCACGACGCGCCCTTCGCCGCCGCCATCGGCGCGTGCATGCTCTCCTCGCTGGTGCTTCCCCCGGTTTCTTCTCCATCAGATGATCCTGATGCTGGCTCCGGTATTGATTCCACCGATGCTAGGTTTGCGGTCATGGGGGTTGTTAGCTTCATTCCCTACTTCAATTGGCTGAGTTGGGTTTTTGCTTGGCTGGATACTGGGAAAAGGCGCTATGCAGTTTATGCACTTGTGTATTTGACCCCCTACATCAGATCGAATTTGAGTTTGTCCCCTGAGGAGAGCTGGCTGCCCATTGCTAGCATCATATTCTGCATTATTCATGTCCAGATAGAGGCAAGTATTAAAAATGGAGATCTTCAGGGATTTCAATTCTTCAATGAAGCTGCAAAGCATGTTTCCTCAATGACTAAAAAAGGAGATCATATAGATGGGCATCAAGGAGCCTCGAAGAAGGGGAGGGAAAGAGAGAATAAGAACCTGCGTTTCGGCCAAGAGCAGGCAAGAAACGAGATTGATGGTCGGGGAGTTCCCAAAAGGCCCTTACAAGACAGTGACTTAAAGGAAGATAGGGATGACAATGAAAGAAGGAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.22

Weight (kDa)

8.77

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	648
AccII	CGCG	2 cut(s)	170, 194
AciI	CCGC	4 cut(s)	75, 180, 183, 290
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	503
AfiI	CCNNNNNNNGG	4 cut(s)	254, 282, 493, 658
AgsI	TTSAA	3 cut(s)	325, 530, 538
AluBI	AGCT	3 cut(s)	309, 444, 545
AluI	AGCT	3 cut(s)	309, 444, 545
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	649, 698
ApeKI	GCWGC	2 cut(s)	448, 545
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspLEI	GCGC	3 cut(s)	172, 194, 372
AspS9I	GGNCC	1 cut(s)	699
AsuC2I	CCSGG	1 cut(s)	224
AsuNHI	GCTAGC	1 cut(s)	458
AxyI	CCTNAGG	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	435, 532
BccI	CCATC	4 cut(s)	194, 244, 584, 671
BciVI	GTATCC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	282, 459
BfoI	RGCGCY	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	4 cut(s)	180, 183, 449, 546
BlsI	GCNGC	4 cut(s)	181, 184, 450, 547
Bme1390I	CCNGG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	2 cut(s)	259, 604
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	4 cut(s)	241, 268, 471, 604
BmtI	GCTAGC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 282, 493, 658
Bse1I	ACTGG	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	58, 739
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	4 cut(s)	254, 282, 493, 658
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	323, 426
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	3 cut(s)	36, 196, 452
BseXI	GCAGC	2 cut(s)	435, 532
Bsh1236I	CGCG	2 cut(s)	170, 194
BshFI	GGCC	2 cut(s)	651, 700
BsiSI	CCGG	2 cut(s)	224, 261
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	4 cut(s)	254, 282, 493, 658
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	651, 700
Bsp143I	GATC	4 cut(s)	244, 413, 514, 580
BspACI	CCGC	4 cut(s)	75, 180, 183, 290
BspANI	GGCC	2 cut(s)	651, 700
BspCNI	CTCAG	2 cut(s)	324, 427
BspFNI	CGCG	2 cut(s)	170, 194
BspLI	GGNNCC	2 cut(s)	259, 604
BspMI	ACCTGC	1 cut(s)	648
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	244, 413, 514, 580
Bst4CI	ACNGT	2 cut(s)	713, 756
Bst6I	CTCTTC	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	6 cut(s)	196, 200, 256, 446, 460, 660
BstDEI	CTNAG	2 cut(s)	332, 435
BstF5I	GGATG	2 cut(s)	58, 739
BstFNI	CGCG	2 cut(s)	170, 194
BstH2I	RGCGCY	1 cut(s)	373
BstHHI	GCGC	3 cut(s)	172, 194, 372
BstKTI	GATC	4 cut(s)	247, 416, 517, 583
BstMBI	GATC	4 cut(s)	244, 413, 514, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 191, 208, 287, 383
BstNSI	RCATGY	2 cut(s)	202, 557
BstSCI	CCNGG	1 cut(s)	222
BstUI	CGCG	2 cut(s)	170, 194
BstV1I	GCAGC	2 cut(s)	435, 532
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	651, 700
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	58, 739
BtsIMutI	CAGTG	1 cut(s)	718
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	6 cut(s)	196, 200, 256, 446, 460, 660
CfoI	GCGC	3 cut(s)	172, 194, 372
Cfr13I	GGNCC	1 cut(s)	699
CseI	GACGC	1 cut(s)	176
CviAII	CATG	4 cut(s)	199, 295, 482, 554
DdeI	CTNAG	2 cut(s)	332, 435
DpnI	GATC	4 cut(s)	246, 415, 516, 582
DpnII	GATC	4 cut(s)	244, 413, 514, 580
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	699
FaeI	CATG	4 cut(s)	202, 298, 485, 557
FaiI	YATR	9 cut(s)	200, 296, 375, 384, 467, 483, 555, 585, 587
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	4 cut(s)	198, 294, 481, 553
Fnu4HI	GCNGC	4 cut(s)	180, 183, 449, 546
FokI	GGATG	2 cut(s)	45, 746
Fsp4HI	GCNGC	4 cut(s)	180, 183, 449, 546
FspBI	CTAG	2 cut(s)	282, 459
GlaI	GCGC	3 cut(s)	171, 193, 371
GluI	GCNGC	4 cut(s)	180, 183, 449, 546
HaeII	RGCGCY	1 cut(s)	373
HaeIII	GGCC	2 cut(s)	651, 700
HapII	CCGG	2 cut(s)	224, 261
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	3 cut(s)	172, 194, 372
Hin1II	CATG	4 cut(s)	202, 298, 485, 557
Hin6I	GCGC	3 cut(s)	170, 192, 370
HinP1I	GCGC	3 cut(s)	170, 192, 370
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	2 cut(s)	224, 261
Hpy188I	TCNGA	2 cut(s)	241, 413
Hpy188III	TCNNGA	3 cut(s)	164, 248, 487
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	184, 607, 741
HpyCH4III	ACNGT	2 cut(s)	713, 756
HpyCH4V	TGCA	5 cut(s)	198, 377, 386, 474, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 191, 208, 287, 383
HpyF3I	CTNAG	2 cut(s)	332, 435
Hsp92II	CATG	4 cut(s)	202, 298, 485, 557
HspAI	GCGC	3 cut(s)	170, 192, 370
Kzo9I	GATC	4 cut(s)	244, 413, 514, 580
LmnI	GCTCC	2 cut(s)	263, 602
Lsp1109I	GCAGC	2 cut(s)	435, 532
LweI	GCATC	4 cut(s)	241, 268, 471, 604
MaeI	CTAG	2 cut(s)	282, 459
MaeIII	GTNAC	2 cut(s)	156, 713
MalI	GATC	4 cut(s)	246, 415, 516, 582
MboI	GATC	4 cut(s)	244, 413, 514, 580
MboII	GAAGA	8 cut(s)	47, 81, 89, 222, 509, 526, 622, 737
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	1 cut(s)	514
MluCI	AATT	3 cut(s)	325, 418, 530
MseI	TTAA	4 cut(s)	39, 81, 504, 719
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	2 cut(s)	224, 261
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	325
MvnI	CGCG	2 cut(s)	170, 194
MwoI	GCNNNNNNNGC	5 cut(s)	176, 191, 208, 287, 383
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	4 cut(s)	244, 413, 514, 580
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	4 cut(s)	202, 298, 485, 557
NlaIV	GGNNCC	2 cut(s)	259, 604
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	2 cut(s)	202, 557
PaeI	GCATGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	4 cut(s)	181, 184, 450, 547
PspN4I	GGNNCC	2 cut(s)	259, 604
PspPI	GGNCC	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	588
SaqAI	TTAA	4 cut(s)	39, 81, 504, 719
SatI	GCNGC	4 cut(s)	180, 183, 449, 546
Sau3AI	GATC	4 cut(s)	244, 413, 514, 580
Sau96I	GGNCC	1 cut(s)	699
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	9 cut(s)	46, 72, 146, 163, 287, 311, 446, 547, 642
SfaNI	GCATC	4 cut(s)	241, 268, 471, 604
SmiMI	CAYNNNNRTG	1 cut(s)	588
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	325, 418, 530
SsiI	CCGC	4 cut(s)	75, 180, 183, 290
SspMI	CTAG	2 cut(s)	282, 459
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	713, 756
TaqI	TCGA	3 cut(s)	148, 416, 608
TasI	AATT	3 cut(s)	325, 418, 530
TauI	GCSGC	2 cut(s)	182, 185
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	4 cut(s)	39, 81, 504, 719
Tru9I	TTAA	4 cut(s)	39, 81, 504, 719
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	2 cut(s)	448, 545
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	5 cut(s)	47, 301, 470, 555, 756
TspRI	CASTG	1 cut(s)	718
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	2 cut(s)	202, 557
XspI	CTAG	2 cut(s)	282, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.