AT5G42040

proteasome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005081
Physical Location & Seq
Reverse (-)
16813565 .. 16814749
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42040.1

Sequence Viewer

Length: 702 bp
ATGGATCCGCAACTAATGGAGGTTTCACAGCAGTTCGAGAGGTTTAAAGCTGCGTTTATAATAAAAGATTTCGATACCTGTTCCAGTCTCTTGTCTCAGCTTAAGTTGTTTGATCATTATCTTATATCACTCTCACTGAATGCATTGCTTTTGCTTACGTGTGCTCTGTTTTTTCTATGTACCAGGAATCGTATTCCGCCATCTCCGCAAGAGAATCTAATCATGGGGTTGAACCTACTGAGACTGCTTGTTCAGAACAGAATAGCTGAATTCCACACAGAACTGGGATTACTTTCATCTGCAACCTTGGAGAATCCTTGCATCAAGCATGCGGTGGAGCTCGAGCAATCCTTCATGGAAGGTGCTTATAACCGTGTGTTGAGTGCTAGACAAACCGCACCTGATGAGACTTACGTCTATTTCATGGATCTCTTGGCAAAAACCATTAGAGATGAAATAGCTGGATGCAGTGAGAAAGCATACGATCATCTCTCAATCAGTGAAGGTTGTAAGATGTTACTCTTCTCGTCTGATCAACAACTGTTAACATATGTGAACGAGGAGCACCCGGAGTGGGAAGTTAAAGACGGGTTAGTTGTCTTCCAAAAAACCAGAGAAACCGCACCGTGCAAGGAGATACCGTCACTTCAACTCATCAACCAGACTCTCAGTTACACCAGAGAGCTCGAGCGTATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0009941 GO:0009962 GO:0009987 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0019222 GO:0019538 GO:0019941 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030163 GO:0031537 GO:0031540 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0035966 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048528 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0051603 GO:0051788 GO:0061458 GO:0065003 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

233

Amino Acids

26.73

Weight (kDa)

5.02

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSN8_PSD8_EIF3K PF10075 71 - 206 2.7e-27 CSN8/PSMD8/EIF3K family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 59, 369
AciI CCGC 6 cut(s) 8, 197, 206, 332, 396, 621
AclWI GGATC 2 cut(s) 12, 435
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 574
AflII CTTAAG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 2 cut(s) 232, 650
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 6 cut(s) 50, 100, 266, 340, 461, 685
AluI AGCT 6 cut(s) 50, 100, 266, 340, 461, 685
Alw21I GWGCWC 4 cut(s) 166, 342, 567, 687
Alw26I GTCTC 4 cut(s) 92, 99, 235, 401
AlwI GGATC 2 cut(s) 12, 435
Ama87I CYCGRG 2 cut(s) 341, 686
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 569
AvaI CYCGRG 2 cut(s) 341, 686
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 342, 687
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 4 cut(s) 166, 342, 567, 687
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 2 cut(s) 112, 532
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 4 cut(s) 92, 99, 235, 401
BfaI CTAG 1 cut(s) 387
BfrI CTTAAG 1 cut(s) 101
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 184, 569
BmeT110I CYCGRG 2 cut(s) 341, 686
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 184, 569
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 330, 455
BmuI ACTGGG 1 cut(s) 293
BoxI GACNNNNGTC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 592
BpuMI CCSGG 1 cut(s) 569
BsaAI YACGTR 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 626, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 574
Bse1I ACTGG 2 cut(s) 84, 288
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 470
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 574
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 3 cut(s) 110, 230, 682
BseNI ACTGG 2 cut(s) 84, 288
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 1 cut(s) 37
BsiHKAI GWGCWC 4 cut(s) 166, 342, 567, 687
BsiHKCI CYCGRG 2 cut(s) 341, 686
BsiSI CCGG 1 cut(s) 569
BslI CCNNNNNNNGG 1 cut(s) 574
BsmAI GTCTC 4 cut(s) 92, 99, 235, 401
BsmI GAATGC 1 cut(s) 145
BsoBI CYCGRG 2 cut(s) 341, 686
Bsp1286I GDGCHC 4 cut(s) 166, 342, 567, 687
Bsp143I GATC 5 cut(s) 4, 112, 427, 484, 532
BspACI CCGC 6 cut(s) 8, 197, 206, 332, 396, 621
BspCNI CTCAG 3 cut(s) 109, 231, 681
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 435
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 2 cut(s) 84, 288
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 5 cut(s) 4, 112, 427, 484, 532
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 4 cut(s) 374, 543, 627, 642
Bst6I CTCTTC 1 cut(s) 527
BstAFI CTTAAG 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 3 cut(s) 96, 239, 668
BstF5I GGATG 1 cut(s) 470
BstKTI GATC 5 cut(s) 7, 115, 430, 487, 535
BstMAI GTCTC 4 cut(s) 92, 99, 235, 401
BstMBI GATC 5 cut(s) 4, 112, 427, 484, 532
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 332
BstPAI GACNNNNGTC 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 182, 567
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 592
BstX2I RGATCY 2 cut(s) 4, 427
BstYI RGATCY 2 cut(s) 4, 427
BtsCI GGATG 1 cut(s) 470
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 3 cut(s) 134, 475, 505
Cac8I GCNNGC 1 cut(s) 330
Csp6I GTAC 1 cut(s) 180
CviAII CATG 4 cut(s) 223, 329, 355, 424
CviJI RGCY 6 cut(s) 50, 100, 266, 340, 461, 685
CviKI_1 RGCY 6 cut(s) 50, 100, 266, 340, 461, 685
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 3 cut(s) 96, 239, 668
DpnI GATC 5 cut(s) 6, 114, 429, 486, 534
DpnII GATC 5 cut(s) 4, 112, 427, 484, 532
DraI TTTAAA 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 2 cut(s) 340, 685
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 342, 687
Eco53kI GAGCTC 2 cut(s) 340, 685
Eco88I CYCGRG 2 cut(s) 341, 686
EcoICRI GAGCTC 2 cut(s) 340, 685
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 145
EcoT38I GRGCYC 2 cut(s) 342, 687
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 226, 332, 358, 427
FatI CATG 4 cut(s) 222, 328, 354, 423
FauNDI CATATG 1 cut(s) 550
FbaI TGATCA 2 cut(s) 112, 532
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 477
FriOI GRGCYC 2 cut(s) 342, 687
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 387
GluI GCNGC 1 cut(s) 51
HapII CCGG 1 cut(s) 569
Hin1II CATG 4 cut(s) 226, 332, 358, 427
HincII GTYRAC 1 cut(s) 546
HindII GTYRAC 1 cut(s) 546
HinfI GANTC 4 cut(s) 187, 214, 313, 664
HpaI GTTAAC 1 cut(s) 546
HpaII CCGG 1 cut(s) 569
Hpy166II GTNNAC 2 cut(s) 546, 556
Hpy188I TCNGA 2 cut(s) 255, 532
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 546, 556
HpyAV CCTTC 3 cut(s) 353, 361, 497
HpyCH4III ACNGT 4 cut(s) 374, 543, 627, 642
HpyCH4IV ACGT 2 cut(s) 158, 414
HpyCH4V TGCA 5 cut(s) 143, 302, 321, 468, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 3 cut(s) 96, 239, 668
HpySE526I ACGT 2 cut(s) 158, 414
Hsp92II CATG 4 cut(s) 226, 332, 358, 427
Ksp22I TGATCA 2 cut(s) 112, 532
KspAI GTTAAC 1 cut(s) 546
Kzo9I GATC 5 cut(s) 4, 112, 427, 484, 532
LmnI GCTCC 2 cut(s) 337, 562
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 330, 455
MaeI CTAG 1 cut(s) 387
MaeII ACGT 2 cut(s) 158, 414
MaeIII GTNAC 3 cut(s) 516, 642, 671
MalI GATC 5 cut(s) 6, 114, 429, 486, 534
MboI GATC 5 cut(s) 4, 112, 427, 484, 532
MboII GAAGA 2 cut(s) 514, 592
MflI RGATCY 2 cut(s) 4, 427
MhlI GDGCHC 4 cut(s) 166, 342, 567, 687
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 658
MnlI CCTC 3 cut(s) 13, 33, 553
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 4 cut(s) 45, 102, 545, 582
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 2 cut(s) 184, 569
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 569
NdeI CATATG 1 cut(s) 550
NdeII GATC 5 cut(s) 4, 112, 427, 484, 532
NlaIII CATG 4 cut(s) 226, 332, 358, 427
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 642
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 332
PaeI GCATGC 1 cut(s) 332
PaeR7I CTCGAG 2 cut(s) 341, 686
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 187, 214, 313
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
Ppu21I YACGTR 1 cut(s) 159
PshAI GACNNNNGTC 1 cut(s) 413
PsiI TTATAA 2 cut(s) 59, 369
Psp124BI GAGCTC 2 cut(s) 342, 687
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 2 cut(s) 341, 686
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
PsuI RGATCY 2 cut(s) 4, 427
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SacI GAGCTC 2 cut(s) 342, 687
SaqAI TTAA 4 cut(s) 45, 102, 545, 582
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 5 cut(s) 4, 112, 427, 484, 532
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 2 cut(s) 184, 569
SduI GDGCHC 4 cut(s) 166, 342, 567, 687
SfaNI GCATC 2 cut(s) 330, 455
Sfr274I CTCGAG 2 cut(s) 341, 686
SlaI CTCGAG 2 cut(s) 341, 686
SmlI CTYRAG 3 cut(s) 101, 341, 686
SmoI CTYRAG 3 cut(s) 101, 341, 686
SphI GCATGC 1 cut(s) 332
Sse9I AATT 1 cut(s) 269
SsiI CCGC 6 cut(s) 8, 197, 206, 332, 396, 621
SspMI CTAG 1 cut(s) 387
SstI GAGCTC 2 cut(s) 342, 687
StyD4I CCNGG 2 cut(s) 182, 567
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 4 cut(s) 374, 543, 627, 642
TaiI ACGT 2 cut(s) 161, 417
TaqI TCGA 4 cut(s) 36, 72, 342, 687
TasI AATT 1 cut(s) 269
TfiI GAWTC 3 cut(s) 187, 214, 313
Tru1I TTAA 4 cut(s) 45, 102, 545, 582
Tru9I TTAA 4 cut(s) 45, 102, 545, 582
TscAI CASTG 3 cut(s) 141, 475, 505
TseFI GTSAC 1 cut(s) 642
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 642
TspDTI ATGAA 4 cut(s) 285, 343, 412, 468
TspRI CASTG 3 cut(s) 141, 475, 505
Vha464I CTTAAG 1 cut(s) 101
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 332
XhoI CTCGAG 2 cut(s) 341, 686
XspI CTAG 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.