Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005081

Physical Location & Seq

Genomic Coordinates Reverse (-)

6601200 .. 6604191

Gene Structure 2992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAGGCGAAGCTAAACGAGCTGACTCAGAACTTCGGGCGATTCAAAGCGGCGTTGATCCGTAATGATTTCGATACAGCTTCCAATCTCCTTTCGGATCTGAAGGTTTTGCTTACTCAGTTCACCAGCTTACCGCCCCTGTATCAAGATACACCTAATGCGGCTAAGGAATTAGAAATAGCAAGGGATATATATGAGCATGCTGTTCTTCTGAGTGTGAAGACTGAGGATCAGGATGCATTTGAGAGGGATTTCTTTCAGCTGAAGCACTATTACACAGATGTTCGTAACCGTCTTCCTCCATCCACCCAAGAGTACCCAATCTTAGGTCTCAACCTGTTGAGGCTCCTTGTCCAGAATAGAATAGCTGAGTTTCACACAGAACTGGAACTGCTCTCATCTGCTGCTTTGGAGAACCCCTGCATTAAGCATGCAGTGGAGTTAGAGCAATCTTTTATGGAGGGAGCTTACAATCGGGTTTTGCATGCTCGGCAGACAGCGCCACATGAAACTTATGTTTATTTTATGGATCTACTGGCGAAAACAGTCAGGGATGAGATAGCTGGCTGCAGTGAGAAGGCATATGATTATCTCTCAGTTAAGGATGCACAAAAAATCTTGCTGTTCCCTTCTGAGCGTGAACTTTTGGCCTATGTCAACGAGGATCATCCTGAATGGGAAGTAAAGAACGGCGGGGTCTATTTCCAGAAGGCCAAGGAGACTGCCCCTTGCAAGGAGATACCTTCTCTGCAGCTTATCAATCAAACTCTCAGTTATGCAAGAGAGTTGGAGCGGATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

268

Amino Acids

30.8

Weight (kDa)

5.12

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAC3_GANP	PF03399	80 - 221	2.9e-06	SAC3/GANP family
CSN8_PSD8_EIF3K	PF10075	106 - 241	1.7e-28	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64520 AT5G42040
fragaria_vesca	FvH4_5g11650 FvH4_6g31620
malus_domestica	MD06G1111600.v1.1 MD14G1132800.v1.1
prunus_persica	Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1
pyrus_communis	pycom06g10450
rosa_chinensis	RchiOBHm_Chr2g0138681 RchiOBHm_Chr7g0186141
rosa_laevigata	RLG00000019755
rosa_multiflora	Rmu_co8118366.1_g000001 Rmu_sc0007053.1_g000010 Rmu_sc0020594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106010 Rroxscaffold_3G00268390
rosa_rugosa	Rorug02G0352200 Rorug06G0472300
rosa_samantha	Rh2AG401800 Rh2BG405800 Rh2CG388000 Rh2DG421900 Rh7AG069200 Rh7BG085200 Rh7CG078900 Rh7DG079000
rosa_wichuraiana	Rw2G032660 Rw7G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	793
AciI	CCGC	5 cut(s)	50, 134, 161, 693, 793
AclWI	GGATC	5 cut(s)	52, 105, 237, 537, 672
AcuI	CTGAAG	2 cut(s)	122, 284
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	326, 733
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	9 cut(s)	13, 22, 80, 129, 262, 368, 467, 563, 754
AluI	AGCT	9 cut(s)	13, 22, 80, 129, 262, 368, 467, 563, 754
Alw26I	GTCTC	2 cut(s)	335, 713
AlwI	GGATC	5 cut(s)	52, 105, 237, 537, 672
AoxI	GGCC	2 cut(s)	648, 711
ApeKI	GCWGC	3 cut(s)	404, 567, 751
AspLEI	GCGC	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbsI	GAAGAC	2 cut(s)	227, 287
BbvI	GCAGC	3 cut(s)	391, 554, 763
BccI	CCATC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	706
BcoDI	GTCTC	2 cut(s)	335, 713
BfmI	CTRYAG	2 cut(s)	568, 749
BfoI	RGCGCY	1 cut(s)	503
BisI	GCNGC	5 cut(s)	51, 162, 405, 568, 752
BlsI	GCNGC	5 cut(s)	52, 163, 406, 569, 753
BmiI	GGNNCC	1 cut(s)	347
BmsI	GCATC	2 cut(s)	226, 595
BpiI	GAAGAC	2 cut(s)	227, 287
Bpu10I	CCTNAGC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	714
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 733
Bse1I	ACTGG	2 cut(s)	390, 540
BseDI	CCNNGG	1 cut(s)	714
BseGI	GGATG	5 cut(s)	241, 302, 559, 610, 667
BseLI	CCNNNNNNNGG	2 cut(s)	326, 733
BseMII	CTCAG	8 cut(s)	41, 131, 203, 216, 360, 609, 624, 784
BseNI	ACTGG	2 cut(s)	390, 540
BseXI	GCAGC	3 cut(s)	391, 554, 763
BshFI	GGCC	2 cut(s)	650, 713
BslI	CCNNNNNNNGG	2 cut(s)	326, 733
BsmAI	GTCTC	2 cut(s)	335, 713
BsnI	GGCC	2 cut(s)	650, 713
Bso31I	GGTCTC	1 cut(s)	335
Bsp143I	GATC	5 cut(s)	57, 97, 229, 529, 664
BspACI	CCGC	5 cut(s)	50, 134, 161, 693, 793
BspANI	GGCC	2 cut(s)	650, 713
BspCNI	CTCAG	8 cut(s)	40, 130, 204, 217, 361, 608, 625, 783
BspLI	GGNNCC	1 cut(s)	347
BspMAI	CTGCAG	2 cut(s)	572, 753
BspPI	GGATC	5 cut(s)	52, 105, 237, 537, 672
BspTNI	GGTCTC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	390, 540
BssECI	CCNNGG	1 cut(s)	714
BssMI	GATC	5 cut(s)	57, 97, 229, 529, 664
BssT1I	CCWWGG	1 cut(s)	714
Bst4CI	ACNGT	2 cut(s)	293, 547
BstC8I	GCNNGC	4 cut(s)	201, 432, 486, 565
BstF5I	GGATG	5 cut(s)	241, 302, 559, 610, 667
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	5 cut(s)	60, 100, 232, 532, 667
BstMAI	GTCTC	2 cut(s)	335, 713
BstMBI	GATC	5 cut(s)	57, 97, 229, 529, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 490, 499
BstNSI	RCATGY	3 cut(s)	203, 434, 488
BstSFI	CTRYAG	2 cut(s)	568, 749
BstV1I	GCAGC	3 cut(s)	391, 554, 763
BstV2I	GAAGAC	2 cut(s)	227, 287
BstX2I	RGATCY	2 cut(s)	97, 529
BstYI	RGATCY	2 cut(s)	97, 529
BsuRI	GGCC	2 cut(s)	650, 713
BtsCI	GGATG	5 cut(s)	241, 302, 559, 610, 667
BtsI	GCAGTG	2 cut(s)	441, 577
BtsIMutI	CAGTG	2 cut(s)	441, 577
Cac8I	GCNNGC	4 cut(s)	201, 432, 486, 565
CfoI	GCGC	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	4 cut(s)	200, 431, 485, 506
CviQI	GTAC	1 cut(s)	316
DpnI	GATC	5 cut(s)	59, 99, 231, 531, 666
DpnII	GATC	5 cut(s)	57, 97, 229, 529, 664
Eco130I	CCWWGG	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	335
Eco57I	CTGAAG	2 cut(s)	122, 284
EcoT14I	CCWWGG	1 cut(s)	714
EcoT22I	ATGCAT	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	4 cut(s)	203, 434, 488, 509
FatI	CATG	4 cut(s)	199, 430, 484, 505
FauI	CCCGC	1 cut(s)	686
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	5 cut(s)	51, 162, 405, 568, 752
FokI	GGATG	5 cut(s)	248, 289, 566, 617, 654
Fsp4HI	GCNGC	5 cut(s)	51, 162, 405, 568, 752
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	5 cut(s)	51, 162, 405, 568, 752
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	650, 713
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	4 cut(s)	203, 434, 488, 509
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HinfI	GANTC	2 cut(s)	25, 42
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	123, 641, 658
Hpy188I	TCNGA	5 cut(s)	30, 97, 102, 213, 634
Hpy188III	TCNNGA	5 cut(s)	146, 233, 355, 671, 706
Hpy8I	GTNNAC	3 cut(s)	123, 641, 658
HpyAV	CCTTC	5 cut(s)	97, 571, 639, 703, 753
HpyCH4III	ACNGT	2 cut(s)	293, 547
HpyCH4V	TGCA	9 cut(s)	239, 423, 434, 484, 570, 608, 732, 751, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 490, 499
Hsp92II	CATG	4 cut(s)	203, 434, 488, 509
HspAI	GCGC	1 cut(s)	500
Kzo9I	GATC	5 cut(s)	57, 97, 229, 529, 664
LmnI	GCTCC	3 cut(s)	351, 464, 790
Lsp1109I	GCAGC	3 cut(s)	391, 554, 763
LweI	GCATC	2 cut(s)	226, 595
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	5 cut(s)	59, 99, 231, 531, 666
MbiI	CCGCTC	1 cut(s)	793
MboI	GATC	5 cut(s)	57, 97, 229, 529, 664
MboII	GAAGA	3 cut(s)	200, 232, 287
MflI	RGATCY	2 cut(s)	97, 529
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	768
MnlI	CCTC	6 cut(s)	220, 240, 309, 336, 454, 655
Mph1103I	ATGCAT	1 cut(s)	241
MseI	TTAA	3 cut(s)	426, 600, 802
MspA1I	CMGCKG	1 cut(s)	262
MwoI	GCNNNNNNNGC	3 cut(s)	19, 490, 499
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	5 cut(s)	57, 97, 229, 529, 664
NlaIII	CATG	4 cut(s)	203, 434, 488, 509
NlaIV	GGNNCC	1 cut(s)	347
NmeAIII	GCCGAG	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	241
NspI	RCATGY	3 cut(s)	203, 434, 488
PaeI	GCATGC	3 cut(s)	203, 434, 488
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	5 cut(s)	52, 163, 406, 569, 753
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	572, 753
PsuI	RGATCY	2 cut(s)	97, 529
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	426, 600, 802
SatI	GCNGC	5 cut(s)	51, 162, 405, 568, 752
Sau3AI	GATC	5 cut(s)	57, 97, 229, 529, 664
SchI	GAGTC	1 cut(s)	19
SfaNI	GCATC	2 cut(s)	226, 595
SfcI	CTRYAG	2 cut(s)	568, 749
SphI	GCATGC	3 cut(s)	203, 434, 488
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	5 cut(s)	50, 134, 161, 693, 793
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	293, 547
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	170
TauI	GCSGC	2 cut(s)	53, 164
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	3 cut(s)	426, 600, 802
Tru9I	TTAA	3 cut(s)	426, 600, 802
TscAI	CASTG	2 cut(s)	441, 577
TseI	GCWGC	3 cut(s)	404, 567, 751
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	441, 577
XceI	RCATGY	3 cut(s)	203, 434, 488
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.