Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8118366.1

Orthogroup ID

OG0005081

Physical Location & Seq

Genomic Coordinates Reverse (-)

39 .. 617

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8118366.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ggagaattagcagtagcaagggacatatatgagcatgctgttgttcttagcttgaagacagaggatgaggaagcattcgagagcgattttcttcagttgaagcagtactattacgccggttacggtctccttccaccgtcccctcaagaggacctgattttaggtctcaatctgctgaggctccttgtgcagaacaaaactgatgagttccacaccgagctggaactgcttgcatgcctgtcacccactgcattggacaacccttgcatcaagcacgcggtggagttgaagcagtccttaatggaggagggaggagcttacataagtgtgttgcttgctcggcagacaatgccagatgacattagtacttacactaatgcaagatatttcatggatcttcttgaaaaaactatcagagatcaggaggcggaccctcccgagggggatgtaaaatatgatgccgcatttttcgagaaggcaaaggagtctgcaccttgcaaggagataccttctctgcagttcatcaatcaaatgctcaaaaaattgggtcagattgatggttcagagaatgatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0009941 GO:0009962 GO:0009987 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0019222 GO:0019538 GO:0019941 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030163 GO:0031537 GO:0031540 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0035966 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048528 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0051603 GO:0051788 GO:0061458 GO:0065003 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

192

Amino Acids

21.63

Weight (kDa)

4.41

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64520 AT5G42040
fragaria_vesca	FvH4_5g11650 FvH4_6g31620
malus_domestica	MD06G1111600.v1.1 MD14G1132800.v1.1
prunus_persica	Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1
pyrus_communis	pycom06g10450
rosa_chinensis	RchiOBHm_Chr2g0138681 RchiOBHm_Chr7g0186141
rosa_laevigata	RLG00000019755
rosa_multiflora	Rmu_co8118366.1_g000001 Rmu_sc0007053.1_g000010 Rmu_sc0020594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106010 Rroxscaffold_3G00268390
rosa_rugosa	Rorug02G0352200 Rorug06G0472300
rosa_samantha	Rh2AG401800 Rh2BG405800 Rh2CG388000 Rh2DG421900 Rh7AG069200 Rh7BG085200 Rh7CG078900 Rh7DG079000
rosa_wichuraiana	Rw2G032660 Rw7G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	278
AciI	CCGC	3 cut(s)	278, 428, 462
AclWI	GGATC	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	107, 367
AfiI	CCNNNNNNNGG	3 cut(s)	148, 439, 440
AgsI	TTSAA	4 cut(s)	55, 100, 289, 404
AluBI	AGCT	4 cut(s)	51, 220, 317, 576
AluI	AGCT	4 cut(s)	51, 220, 317, 576
Alw26I	GTCTC	2 cut(s)	131, 170
AlwI	GGATC	1 cut(s)	402
Ama87I	CYCGRG	1 cut(s)	437
AspS9I	GGNCC	2 cut(s)	151, 430
AsuHPI	GGTGA	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	151, 430
BbsI	GAAGAC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	131, 170
BfaI	CTAG	1 cut(s)	577
BfmI	CTRYAG	1 cut(s)	515
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
BmcAI	AGTACT	2 cut(s)	107, 367
Bme18I	GGWCC	2 cut(s)	151, 430
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	151, 430
BmiI	GGNNCC	2 cut(s)	182, 432
BmsI	GCATC	2 cut(s)	276, 448
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	131, 170
BsaJI	CCNNGG	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 439, 440
Bse118I	RCCGGY	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	2 cut(s)	70, 451
BseLI	CCNNNNNNNGG	3 cut(s)	148, 439, 440
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	2 cut(s)	320, 327
BsgI	GTGCAG	2 cut(s)	209, 474
Bsh1236I	CGCG	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	35, 124
BslI	CCNNNNNNNGG	3 cut(s)	148, 439, 440
BsmAI	GTCTC	2 cut(s)	131, 170
BsmFI	GGGAC	2 cut(s)	35, 124
BsmI	GAATGC	1 cut(s)	74
Bso31I	GGTCTC	2 cut(s)	131, 170
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	394, 418
BspACI	CCGC	3 cut(s)	278, 428, 462
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	182, 432
BspMAI	CTGCAG	1 cut(s)	519
BspPI	GGATC	1 cut(s)	402
BspTNI	GGTCTC	2 cut(s)	131, 170
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	2 cut(s)	394, 418
Bst4CI	ACNGT	2 cut(s)	125, 138
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	5 cut(s)	36, 231, 235, 276, 336
BstDEI	CTNAG	2 cut(s)	47, 176
BstF5I	GGATG	2 cut(s)	70, 451
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	2 cut(s)	397, 421
BstMAI	GTCTC	2 cut(s)	131, 170
BstMBI	GATC	2 cut(s)	394, 418
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 226, 340, 349
BstNSI	RCATGY	2 cut(s)	38, 237
BstSFI	CTRYAG	1 cut(s)	515
BstUI	CGCG	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	70, 451
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	5 cut(s)	36, 231, 235, 276, 336
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	151, 430
Csp6I	GTAC	2 cut(s)	106, 366
CviAII	CATG	3 cut(s)	35, 234, 391
CviJI	RGCY	5 cut(s)	51, 181, 220, 317, 576
CviKI_1	RGCY	5 cut(s)	51, 181, 220, 317, 576
CviQI	GTAC	2 cut(s)	106, 366
DdeI	CTNAG	2 cut(s)	47, 176
DpnI	GATC	2 cut(s)	396, 420
DpnII	GATC	2 cut(s)	394, 418
DraIII	CACNNNGTG	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	443
Eco31I	GGTCTC	2 cut(s)	131, 170
Eco47I	GGWCC	2 cut(s)	151, 430
Eco57I	CTGAAG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	151
FaeI	CATG	3 cut(s)	38, 237, 394
FaiI	YATR	8 cut(s)	26, 28, 30, 36, 235, 323, 392, 456
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	2 cut(s)	35, 124
FatI	CATG	3 cut(s)	34, 233, 390
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	2 cut(s)	77, 458
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	577
GluI	GCNGC	1 cut(s)	462
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	3 cut(s)	38, 237, 394
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	234
Hpy188I	TCNGA	3 cut(s)	416, 552, 565
Hpy188III	TCNNGA	6 cut(s)	79, 146, 401, 422, 437, 472
HpyAV	CCTTC	3 cut(s)	140, 469, 519
HpyCH4III	ACNGT	2 cut(s)	125, 138
HpyCH4V	TGCA	8 cut(s)	190, 233, 251, 267, 380, 491, 498, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 226, 340, 349
HpyF3I	CTNAG	2 cut(s)	47, 176
Hsp92II	CATG	3 cut(s)	38, 237, 394
Kzo9I	GATC	2 cut(s)	394, 418
LmnI	GCTCC	2 cut(s)	186, 314
LpnPI	CCDG	6 cut(s)	130, 167, 206, 251, 366, 407
LweI	GCATC	2 cut(s)	276, 448
MaeI	CTAG	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	119, 240
MalI	GATC	2 cut(s)	396, 420
MboI	GATC	2 cut(s)	394, 418
MboII	GAAGA	3 cut(s)	67, 83, 389
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	2 cut(s)	5, 542
MlyI	GAGTC	1 cut(s)	494
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	74
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	4 cut(s)	187, 226, 340, 349
NdeII	GATC	2 cut(s)	394, 418
NlaIII	CATG	3 cut(s)	38, 237, 394
NlaIV	GGNNCC	2 cut(s)	182, 432
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	2 cut(s)	38, 237
PaeI	GCATGC	2 cut(s)	38, 237
PctI	GAATGC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	182, 432
PspPI	GGNCC	2 cut(s)	151, 430
PspPPI	RGGWCCY	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	2 cut(s)	107, 367
RsaNI	GTAC	2 cut(s)	106, 366
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	394, 418
Sau96I	GGNCC	2 cut(s)	151, 430
ScaI	AGTACT	2 cut(s)	107, 367
SchI	GAGTC	1 cut(s)	494
SetI	ASST	8 cut(s)	53, 156, 166, 222, 319, 496, 511, 578
SfaNI	GCATC	2 cut(s)	276, 448
SfcI	CTRYAG	1 cut(s)	515
SinI	GGWCC	2 cut(s)	151, 430
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SphI	GCATGC	2 cut(s)	38, 237
Sse9I	AATT	2 cut(s)	5, 542
SsiI	CCGC	3 cut(s)	278, 428, 462
SspMI	CTAG	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	125, 138
TaqI	TCGA	2 cut(s)	78, 471
TasI	AATT	2 cut(s)	5, 542
TatI	WGTACW	2 cut(s)	105, 365
TauI	GCSGC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	379, 511
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	151, 430
XceI	RCATGY	2 cut(s)	38, 237
XspI	CTAG	1 cut(s)	577
ZrmI	AGTACT	2 cut(s)	107, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.