RLG00000019755

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005081
Physical Location & Seq
Reverse (-)
56318400 .. 56319497
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019755

Sequence Viewer

Length: 816 bp
ATGGATGCCCCGCTACAAGAGGTGCACCTGAACTTCGATCTCTTCATAGAGGCATTTGAACAGAAAGATTTCAATGCATGCACCGAGCTCCTCCCCAAACTCAAGGCCATGATAGCACAAATGAGAAGCCTCCCGCCGATGTATGAAGCTACACCTAATGCGGCGGGAGAATTAGCAGTAGCAAGGGACATATATGAGCATGCAGTTGTTCTTAGCTTGAAGACAGAGGATGAGGAAGCATTCGAGAGGAATTTTCTTCAGTTGAAGCAGTACTATTACGCCGGTTACGGTCTCCTTCCACCTTCCCCTCAAGAGGACCTGATTTTAGGTCTCAATCTGCTGAGGCTCCTTGTGCAGAACAAAACTGATGAGTTCCACACCGAGCTGGAACTGCTTGCATGCCTGTCACCCACTGCATTGGACTACCCTTGCATCAAGCACGCGGTGGAGTTGAAGCAGTCCTTAATGGAGGAGGGAGGAGCTTACATAAGTGTGTTGCTTGCTCGGCAGACAATGCCAGATGACTTTAGTACTTACACTTATGCAAGATATTTCAAGGATCTTCTTGAAAAAACTATCAGAGATCAGGAGGCGGACCCTCCCGAGGGGGAAGTGAAATATGATGCCGTATTTTTCGAGAAGGCAAAGGAGTCAGCACCTTGCAAGGAGATACCCCCTCTGCAGTTCATCAATCAAATGCTCAGTTGTGCAACAAAGTTGGGTCAGATTGATGGTTCAGAGAATGATAGCTACCTTGGTGTTACATCTGCAGCGCGGCCGCCTTGGTGCCCGTGTGCCTTTGATCTCGAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0009941 GO:0009962 GO:0009987 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0019222 GO:0019538 GO:0019941 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030163 GO:0031537 GO:0031540 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0035966 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048528 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0051603 GO:0051788 GO:0061458 GO:0065003 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

272

Amino Acids

30.69

Weight (kDa)

4.51

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 786
AccII CGCG 2 cut(s) 443, 775
AciI CCGC 8 cut(s) 11, 134, 161, 164, 443, 593, 775, 779
AclWI GGATC 1 cut(s) 567
AcoI YGGCCR 1 cut(s) 776
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 242
AdeI CACNNNGTG 1 cut(s) 445
AfaI GTAC 3 cut(s) 272, 532, 812
AfiI CCNNNNNNNGG 3 cut(s) 313, 604, 605
AgsI TTSAA 7 cut(s) 59, 73, 220, 265, 454, 556, 569
AluBI AGCT 6 cut(s) 88, 149, 216, 385, 482, 750
AluI AGCT 6 cut(s) 88, 149, 216, 385, 482, 750
Alw21I GWGCWC 2 cut(s) 27, 90
Alw26I GTCTC 2 cut(s) 296, 335
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 1 cut(s) 567
Ama87I CYCGRG 2 cut(s) 602, 806
AoxI GGCC 2 cut(s) 105, 776
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 775
AspS9I GGNCC 2 cut(s) 316, 595
AsuHPI GGTGA 1 cut(s) 399
AvaI CYCGRG 2 cut(s) 602, 806
AvaII GGWCC 2 cut(s) 316, 595
BaeGI GKGCMC 2 cut(s) 27, 791
BanI GGYRCC 1 cut(s) 786
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 27, 90
BbvCI CCTCAGC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 782
BccI CCATC 1 cut(s) 725
BceAI ACGGC 1 cut(s) 611
BcoDI GTCTC 2 cut(s) 296, 335
BfaI CTAG 1 cut(s) 814
BfmI CTRYAG 2 cut(s) 680, 768
BisI GCNGC 4 cut(s) 162, 771, 776, 779
BlsI GCNGC 4 cut(s) 163, 772, 777, 780
BmcAI AGTACT 3 cut(s) 272, 532, 812
Bme18I GGWCC 2 cut(s) 316, 595
BmeT110I CYCGRG 2 cut(s) 602, 806
BmgT120I GGNCC 2 cut(s) 316, 595
BmiI GGNNCC 3 cut(s) 347, 597, 788
BmsI GCATC 2 cut(s) 441, 613
BpiI GAAGAC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 341
BpuEI CTTGAG 2 cut(s) 86, 294
BsaI GGTCTC 2 cut(s) 296, 335
BsaJI CCNNGG 3 cut(s) 603, 754, 782
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 604, 605
Bse118I RCCGGY 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 603, 754, 782
BseGI GGATG 2 cut(s) 10, 235
BseLI CCNNNNNNNGG 3 cut(s) 313, 604, 605
BseMII CTCAG 2 cut(s) 332, 715
BseRI GAGGAG 3 cut(s) 80, 485, 492
BseSI GKGCMC 2 cut(s) 27, 791
BseX3I CGGCCG 1 cut(s) 776
BseXI GCAGC 1 cut(s) 782
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 2 cut(s) 443, 775
Bsh1285I CGRYCG 1 cut(s) 779
BshFI GGCC 2 cut(s) 107, 778
BshNI GGYRCC 1 cut(s) 786
BsiEI CGRYCG 1 cut(s) 779
BsiHKAI GWGCWC 2 cut(s) 27, 90
BsiHKCI CYCGRG 2 cut(s) 602, 806
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 3 cut(s) 313, 604, 605
BsmAI GTCTC 2 cut(s) 296, 335
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 2 cut(s) 107, 778
Bso31I GGTCTC 2 cut(s) 296, 335
BsoBI CYCGRG 2 cut(s) 602, 806
Bsp1286I GDGCHC 3 cut(s) 27, 90, 791
Bsp143I GATC 4 cut(s) 37, 559, 583, 802
BspACI CCGC 8 cut(s) 11, 134, 161, 164, 443, 593, 775, 779
BspANI GGCC 2 cut(s) 107, 778
BspCNI CTCAG 2 cut(s) 333, 714
BspFNI CGCG 2 cut(s) 443, 775
BspLI GGNNCC 3 cut(s) 347, 597, 788
BspMAI CTGCAG 2 cut(s) 684, 772
BspPI GGATC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 786
BspTNI GGTCTC 2 cut(s) 296, 335
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 603, 754, 782
BssMI GATC 4 cut(s) 37, 559, 583, 802
BssT1I CCWWGG 2 cut(s) 754, 782
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 514
BstC8I GCNNGC 6 cut(s) 79, 201, 396, 400, 441, 501
BstDEI CTNAG 3 cut(s) 212, 341, 701
BstF5I GGATG 2 cut(s) 10, 235
BstFNI CGCG 2 cut(s) 443, 775
BstHHI GCGC 1 cut(s) 775
BstKTI GATC 4 cut(s) 40, 562, 586, 805
BstMAI GTCTC 2 cut(s) 296, 335
BstMBI GATC 4 cut(s) 37, 559, 583, 802
BstMCI CGRYCG 1 cut(s) 779
BstMWI GCNNNNNNNGC 5 cut(s) 113, 352, 391, 505, 514
BstNSI RCATGY 3 cut(s) 81, 203, 402
BstSFI CTRYAG 2 cut(s) 680, 768
BstSLI GKGCMC 2 cut(s) 27, 791
BstUI CGCG 2 cut(s) 443, 775
BstV1I GCAGC 1 cut(s) 782
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 1 cut(s) 559
BstZI CGGCCG 1 cut(s) 776
BsuRI GGCC 2 cut(s) 107, 778
BtsCI GGATG 2 cut(s) 10, 235
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 6 cut(s) 79, 201, 396, 400, 441, 501
CciNI GCGGCCGC 1 cut(s) 776
CfoI GCGC 1 cut(s) 775
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 316, 595
Csp6I GTAC 3 cut(s) 271, 531, 811
CviAII CATG 4 cut(s) 78, 109, 200, 399
CviQI GTAC 3 cut(s) 271, 531, 811
DdeI CTNAG 3 cut(s) 212, 341, 701
DpnI GATC 4 cut(s) 39, 561, 585, 804
DpnII GATC 4 cut(s) 37, 559, 583, 802
DraIII CACNNNGTG 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 776
EagI CGGCCG 1 cut(s) 776
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 608
Ecl136II GAGCTC 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 776
Eco130I CCWWGG 2 cut(s) 754, 782
Eco24I GRGCYC 1 cut(s) 90
Eco31I GGTCTC 2 cut(s) 296, 335
Eco47I GGWCC 2 cut(s) 316, 595
Eco52I CGGCCG 1 cut(s) 776
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 2 cut(s) 602, 806
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 754, 782
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 2 cut(s) 754, 782
FaeI CATG 4 cut(s) 81, 112, 203, 402
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 77, 108, 199, 398
FauI CCCGC 3 cut(s) 18, 141, 157
Fnu4HI GCNGC 4 cut(s) 162, 771, 776, 779
FokI GGATG 2 cut(s) 17, 242
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 4 cut(s) 162, 771, 776, 779
FspBI CTAG 1 cut(s) 814
GlaI GCGC 1 cut(s) 774
GluI GCNGC 4 cut(s) 162, 771, 776, 779
HaeIII GGCC 2 cut(s) 107, 778
HapII CCGG 1 cut(s) 282
HhaI GCGC 1 cut(s) 775
Hin1II CATG 4 cut(s) 81, 112, 203, 402
Hin6I GCGC 1 cut(s) 773
HinP1I GCGC 1 cut(s) 773
HinfI GANTC 1 cut(s) 650
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 399
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 581, 726, 739
Hpy188III TCNNGA 7 cut(s) 244, 311, 566, 587, 602, 637, 806
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 305, 312, 634
HpyCH4III ACNGT 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 352, 391, 505, 514
HpyF3I CTNAG 3 cut(s) 212, 341, 701
Hsp92II CATG 4 cut(s) 81, 112, 203, 402
HspAI GCGC 1 cut(s) 773
Kzo9I GATC 4 cut(s) 37, 559, 583, 802
LmnI GCTCC 3 cut(s) 93, 351, 479
LpnPI CCDG 7 cut(s) 41, 295, 332, 371, 416, 531, 572
Lsp1109I GCAGC 1 cut(s) 782
LweI GCATC 2 cut(s) 441, 613
MaeI CTAG 1 cut(s) 814
MaeIII GTNAC 3 cut(s) 284, 405, 760
MalI GATC 4 cut(s) 39, 561, 585, 804
MboI GATC 4 cut(s) 37, 559, 583, 802
MboII GAAGA 4 cut(s) 34, 232, 248, 554
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 3 cut(s) 27, 90, 791
MluCI AATT 2 cut(s) 170, 250
MlyI GAGTC 1 cut(s) 659
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 1 cut(s) 491
MspI CCGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 239
MvnI CGCG 2 cut(s) 443, 775
MwoI GCNNNNNNNGC 5 cut(s) 113, 352, 391, 505, 514
NdeII GATC 4 cut(s) 37, 559, 583, 802
NlaIII CATG 4 cut(s) 81, 112, 203, 402
NlaIV GGNNCC 3 cut(s) 347, 597, 788
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 405
NotI GCGGCCGC 1 cut(s) 776
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 3 cut(s) 81, 203, 402
PaeI GCATGC 3 cut(s) 81, 203, 402
PaeR7I CTCGAG 1 cut(s) 806
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 68
PkrI GCNGC 4 cut(s) 163, 772, 777, 780
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 316
PspN4I GGNNCC 3 cut(s) 347, 597, 788
PspPI GGNCC 2 cut(s) 316, 595
PspPPI RGGWCCY 1 cut(s) 316
PstI CTGCAG 2 cut(s) 684, 772
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 3 cut(s) 272, 532, 812
RsaNI GTAC 3 cut(s) 271, 531, 811
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 4 cut(s) 162, 771, 776, 779
Sau3AI GATC 4 cut(s) 37, 559, 583, 802
Sau96I GGNCC 2 cut(s) 316, 595
ScaI AGTACT 3 cut(s) 272, 532, 812
SchI GAGTC 1 cut(s) 659
SduI GDGCHC 3 cut(s) 27, 90, 791
SfaNI GCATC 2 cut(s) 441, 613
SfcI CTRYAG 2 cut(s) 680, 768
Sfr274I CTCGAG 1 cut(s) 806
SinI GGWCC 2 cut(s) 316, 595
SlaI CTCGAG 1 cut(s) 806
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 3 cut(s) 101, 309, 806
SmoI CTYRAG 3 cut(s) 101, 309, 806
SphI GCATGC 3 cut(s) 81, 203, 402
Sse9I AATT 2 cut(s) 170, 250
SsiI CCGC 8 cut(s) 11, 134, 161, 164, 443, 593, 775, 779
SspMI CTAG 1 cut(s) 814
SstI GAGCTC 1 cut(s) 90
StyI CCWWGG 2 cut(s) 754, 782
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 4 cut(s) 36, 243, 636, 807
TasI AATT 2 cut(s) 170, 250
TatI WGTACW 3 cut(s) 270, 530, 810
TauI GCSGC 3 cut(s) 164, 778, 781
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 405
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 3 cut(s) 34, 159, 676
TspRI CASTG 1 cut(s) 418
VneI GTGCAC 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 316, 595
XapI RAATTY 1 cut(s) 250
XceI RCATGY 3 cut(s) 81, 203, 402
XhoI CTCGAG 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 814
ZrmI AGTACT 3 cut(s) 272, 532, 812
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.