Rh7CG078900

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005081
Physical Location & Seq
Forward (+)
5675744 .. 5678449
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG078900.1

Sequence Viewer

Length: 744 bp
ATGTTTGTGTATGGGCAGAACTTAACTTGGTTGTTGGTTTTGCAGGTCATGCTGACTGAATTCAGCAGCCTACCGCCCCTGTATCAAGATACACCTAATGCGGCTAAGGAATTAGAAGTAGCAAGGGATATATATGAGCATGCTGTTCTTCTTAGTGTGAAGACTGAGGATCAGGATGCATTTGAGAGGGATTTCTTTCAGCTGAAGCACTACTACACAGATGTTCGTAACCGACTTCCTCCATCCACCCAAGAGTACCCAATCTTAGGTCTCAACCTGTTGAGACTCCTTGTCCAGAATAGAATAGCTGAGTTCCACACAGAACTGGAACTGCTCTCCTCCGCTGCTTTGGAGAACCCTTGCATCAAGCATGCAGTGGAGTTGGAGCAATCCTTTATGGAGGGAGCTTACAATCGGGTGTTGCATGCTCGACAGACAGTGCCACATGAAACTTATGTTTATTTCATGGACCTGCTGGCAAAAACAGTCAGGGACGAGATAGCTGGCTGCAGTGAGAAGGCATATGATTATCTTTCAATTAAGGACGCACAAAAAATGTTGCTGTTCCCTTCTGAGCGTGAACTTTTGGCCTATATCAACGAGGATCATCCTGAGTGGGAAGTAAAGAATGGCGGGGTCTATTTCCAGAAGGCCAAGGAGATCGCCCCTTGCAAGGAGATACCTTCTCTGCAGCTTATCAACCAAACTCTCAGTTATGCAAGAGAGTTGGAGCGGATTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

247

Amino Acids

28.72

Weight (kDa)

5.01

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAC3_GANP PF03399 60 - 201 1.1e-06 SAC3/GANP family
CSN8_PSD8_EIF3K PF10075 86 - 221 7e-29 CSN8/PSMD8/EIF3K family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 34, 480
AccBSI CCGCTC 1 cut(s) 733
AciI CCGC 5 cut(s) 74, 101, 342, 633, 733
AclWI GGATC 2 cut(s) 177, 612
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 266, 673
AgsI TTSAA 1 cut(s) 537
AhdI GACNNNNNGTC 1 cut(s) 290
AluBI AGCT 5 cut(s) 202, 308, 407, 503, 694
AluI AGCT 5 cut(s) 202, 308, 407, 503, 694
Alw26I GTCTC 2 cut(s) 275, 277
AlwI GGATC 2 cut(s) 177, 612
AoxI GGCC 2 cut(s) 588, 651
ApeKI GCWGC 4 cut(s) 66, 344, 507, 691
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 469
AvaII GGWCC 1 cut(s) 469
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 78, 331, 494, 703
BccI CCATC 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 275, 277
BfmI CTRYAG 2 cut(s) 508, 689
BfuAI ACCTGC 2 cut(s) 34, 480
BisI GCNGC 5 cut(s) 67, 102, 345, 508, 692
BlsI GCNGC 5 cut(s) 68, 103, 346, 509, 693
Bme18I GGWCC 1 cut(s) 469
BmeRI GACNNNNNGTC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 469
BmsI GCATC 2 cut(s) 166, 372
BpiI GAAGAC 1 cut(s) 167
Bpu10I CCTNAGC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 654
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 673
Bse1I ACTGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 3 cut(s) 181, 242, 607
BseLI CCNNNNNNNGG 2 cut(s) 266, 673
BseMII CTCAG 5 cut(s) 156, 300, 564, 603, 724
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 4 cut(s) 78, 331, 494, 703
BshFI GGCC 2 cut(s) 590, 653
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 266, 673
BsmAI GTCTC 2 cut(s) 275, 277
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 2 cut(s) 590, 653
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 169, 604, 660
BspACI CCGC 5 cut(s) 74, 101, 342, 633, 733
BspANI GGCC 2 cut(s) 590, 653
BspCNI CTCAG 5 cut(s) 157, 301, 565, 604, 723
BspMAI CTGCAG 2 cut(s) 512, 693
BspMI ACCTGC 2 cut(s) 34, 480
BspPI GGATC 2 cut(s) 177, 612
BspTNI GGTCTC 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 733
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 3 cut(s) 169, 604, 660
BssT1I CCWWGG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 439, 487
BstAPI GCANNNNNTGC 1 cut(s) 49
BstC8I GCNNGC 5 cut(s) 141, 372, 426, 477, 505
BstDEI CTNAG 8 cut(s) 105, 152, 165, 265, 309, 573, 612, 710
BstF5I GGATG 3 cut(s) 181, 242, 607
BstKTI GATC 3 cut(s) 172, 607, 663
BstMAI GTCTC 2 cut(s) 275, 277
BstMBI GATC 3 cut(s) 169, 604, 660
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 3 cut(s) 143, 374, 428
BstSFI CTRYAG 2 cut(s) 508, 689
BstV1I GCAGC 4 cut(s) 78, 331, 494, 703
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 2 cut(s) 590, 653
BtsCI GGATG 3 cut(s) 181, 242, 607
BtsI GCAGTG 2 cut(s) 381, 517
BtsIMutI CAGTG 3 cut(s) 381, 444, 517
BveI ACCTGC 2 cut(s) 34, 480
Cac8I GCNNGC 5 cut(s) 141, 372, 426, 477, 505
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 1 cut(s) 554
Csp6I GTAC 1 cut(s) 256
CviAII CATG 6 cut(s) 49, 140, 371, 425, 446, 466
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 8 cut(s) 105, 152, 165, 265, 309, 573, 612, 710
DpnI GATC 3 cut(s) 171, 606, 662
DpnII GATC 3 cut(s) 169, 604, 660
DriI GACNNNNNGTC 1 cut(s) 290
Eam1105I GACNNNNNGTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 654
EcoT22I ATGCAT 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 654
FaeI CATG 6 cut(s) 52, 143, 374, 428, 449, 469
FaqI GGGAC 1 cut(s) 506
FatI CATG 6 cut(s) 48, 139, 370, 424, 445, 465
FauI CCCGC 1 cut(s) 626
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 5 cut(s) 67, 102, 345, 508, 692
FokI GGATG 3 cut(s) 188, 229, 594
Fsp4HI GCNGC 5 cut(s) 67, 102, 345, 508, 692
GluI GCNGC 5 cut(s) 67, 102, 345, 508, 692
HaeIII GGCC 2 cut(s) 590, 653
HgaI GACGC 1 cut(s) 554
Hin1II CATG 6 cut(s) 52, 143, 374, 428, 449, 469
HinfI GANTC 1 cut(s) 285
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 1 cut(s) 574
Hpy188III TCNNGA 5 cut(s) 86, 173, 295, 611, 646
Hpy8I GTNNAC 1 cut(s) 581
HpyAV CCTTC 4 cut(s) 511, 579, 643, 693
HpyCH4III ACNGT 2 cut(s) 439, 487
HpyCH4V TGCA 9 cut(s) 43, 179, 363, 374, 424, 510, 672, 691, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 8 cut(s) 105, 152, 165, 265, 309, 573, 612, 710
Hsp92II CATG 6 cut(s) 52, 143, 374, 428, 449, 469
Kzo9I GATC 3 cut(s) 169, 604, 660
LmnI GCTCC 3 cut(s) 385, 404, 730
Lsp1109I GCAGC 4 cut(s) 78, 331, 494, 703
LweI GCATC 2 cut(s) 166, 372
MaeIII GTNAC 1 cut(s) 227
MalI GATC 3 cut(s) 171, 606, 662
MbiI CCGCTC 1 cut(s) 733
MboI GATC 3 cut(s) 169, 604, 660
MboII GAAGA 2 cut(s) 140, 172
MluCI AATT 3 cut(s) 59, 110, 537
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 363, 708
MnlI CCTC 6 cut(s) 160, 180, 249, 349, 394, 595
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 2 cut(s) 23, 540
MspA1I CMGCKG 2 cut(s) 202, 344
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeI CATATG 1 cut(s) 523
NdeII GATC 3 cut(s) 169, 604, 660
NlaIII CATG 6 cut(s) 52, 143, 374, 428, 449, 469
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 3 cut(s) 143, 374, 428
PaeI GCATGC 3 cut(s) 143, 374, 428
PkrI GCNGC 5 cut(s) 68, 103, 346, 509, 693
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 469
PstI CTGCAG 2 cut(s) 512, 693
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 23, 540
SatI GCNGC 5 cut(s) 67, 102, 345, 508, 692
Sau3AI GATC 3 cut(s) 169, 604, 660
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 166, 372
SfcI CTRYAG 2 cut(s) 508, 689
SinI GGWCC 1 cut(s) 469
SphI GCATGC 3 cut(s) 143, 374, 428
Sse9I AATT 3 cut(s) 59, 110, 537
SsiI CCGC 5 cut(s) 74, 101, 342, 633, 733
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 2 cut(s) 439, 487
TaqI TCGA 1 cut(s) 430
TasI AATT 3 cut(s) 59, 110, 537
TauI GCSGC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 23, 540
Tru9I TTAA 2 cut(s) 23, 540
TscAI CASTG 3 cut(s) 381, 444, 517
TseI GCWGC 4 cut(s) 66, 344, 507, 691
TspDTI ATGAA 2 cut(s) 454, 462
TspRI CASTG 3 cut(s) 381, 444, 517
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 1 cut(s) 59
XceI RCATGY 3 cut(s) 143, 374, 428
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.