Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005081

Physical Location & Seq

Genomic Coordinates Forward (+)

12254202 .. 12257107

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G124300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGATCCGAAGCTGACAGAGGTGGCGCAGCTCTTCGAGCGGTTCAAAGCGGCATTTGTGCGGAACGATTTCGATACCTGCTCCAATTTCCTCTCCCAGCTCAAGGTCAAGCTGACTGAATTCAGAAGCCTACCGCCCTTGTTCGAAGACACTCCTAATGCGATTCGTGAATTAACATTAGCAAGGGATATATATGAGCATGCTGTTGTTCTTAGTGTGAAGATTGAGGATCAGGATGCATTTGAAAGGGATTTCTTTCAGTTGAAGTCCTATTACACAGATGCTCGCAGTGACCGTCTTCCACCATCCCCTCAAGAGTACCCAATTTTAGGTCTCAACCTGTTGAGACTCCTTGTCCAGAATAGAATTGCTGAGTTCCACACTGAACTGGAACTGCTTTCATCCGCTGCTTTGGAGAACCCTTGCATTAAGCATGCTGTGGAGCTGGAGCAATCTTTCATGGAGGGGGCTTACAACCGTGTTTTGAGTGCTAGGCAGACAGTGCCACATGAGACTTATGTTTATTTTATGGATCTCCTGGCGAAAACAGTCAGAGATGAGATAGCTGGATGCAGCGAGAAGGCATATGATTATCTCTCCATTAAGGATGCACGTCAGATGTTGCTGTTCCCTTCTGACCGTGACCTTTTGGCATATGTGGAGGAGGATCATCCTGAGTGGGAAGTAAAGAATGACGCTGTCTATTTCCAGAAGGCAAAGGAGACTGCTCCTTGCAAGGAGATACCTTCTCTACAGCTCATCAACCAAACGCTCAGCTATGCGAGAGAGTTGGAGCGGATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

269

Amino Acids

31.13

Weight (kDa)

4.9

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64520 AT5G42040
fragaria_vesca	FvH4_5g11650 FvH4_6g31620
malus_domestica	MD06G1111600.v1.1 MD14G1132800.v1.1
prunus_persica	Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1
pyrus_communis	pycom06g10450
rosa_chinensis	RchiOBHm_Chr2g0138681 RchiOBHm_Chr7g0186141
rosa_laevigata	RLG00000019755
rosa_multiflora	Rmu_co8118366.1_g000001 Rmu_sc0007053.1_g000010 Rmu_sc0020594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106010 Rroxscaffold_3G00268390
rosa_rugosa	Rorug02G0352200 Rorug06G0472300
rosa_samantha	Rh2AG401800 Rh2BG405800 Rh2CG388000 Rh2DG421900 Rh7AG069200 Rh7BG085200 Rh7CG078900 Rh7DG079000
rosa_wichuraiana	Rw2G032660 Rw7G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccBSI	CCGCTC	2 cut(s)	40, 796
AciI	CCGC	6 cut(s)	40, 50, 61, 134, 405, 796
AclWI	GGATC	4 cut(s)	12, 237, 540, 675
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	103, 329
AgsI	TTSAA	3 cut(s)	46, 245, 265
AhdI	GACNNNNNGTC	1 cut(s)	353
AjiI	CACGTC	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	8 cut(s)	13, 31, 100, 112, 445, 566, 757, 777
AluI	AGCT	8 cut(s)	13, 31, 100, 112, 445, 566, 757, 777
Alw26I	GTCTC	4 cut(s)	338, 340, 506, 716
AlwI	GGATC	4 cut(s)	12, 237, 540, 675
ApeKI	GCWGC	3 cut(s)	28, 407, 573
ApoI	RAATTY	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbsI	GAAGAC	2 cut(s)	153, 290
BbvI	GCAGC	3 cut(s)	40, 394, 585
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	539
BcoDI	GTCTC	4 cut(s)	338, 340, 506, 716
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	4 cut(s)	29, 51, 408, 574
BlpI	GCTNAGC	1 cut(s)	773
BlsI	GCNGC	4 cut(s)	30, 52, 409, 575
Bme1390I	CCNGG	1 cut(s)	539
BmeRI	GACNNNNNGTC	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	4 cut(s)	226, 271, 560, 598
BpiI	GAAGAC	2 cut(s)	153, 290
BpmI	CTGGAG	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	773
Bpu14I	TTCGAA	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	86, 297
BsaI	GGTCTC	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 329
Bse1I	ACTGG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	539
BseGI	GGATG	6 cut(s)	241, 305, 401, 575, 613, 670
BseLI	CCNNNNNNNGG	2 cut(s)	103, 329
BseMII	CTCAG	3 cut(s)	363, 666, 787
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	3 cut(s)	40, 394, 585
BseYI	CCCAGC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	103, 329
BsmAI	GTCTC	4 cut(s)	338, 340, 506, 716
Bso31I	GGTCTC	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	4, 229, 532, 667
Bsp1720I	GCTNAGC	1 cut(s)	773
BspACI	CCGC	6 cut(s)	40, 50, 61, 134, 405, 796
BspCNI	CTCAG	3 cut(s)	364, 667, 786
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	4 cut(s)	12, 237, 540, 675
BspQI	GCTCTTC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	338
BsrBI	CCGCTC	2 cut(s)	40, 796
BsrI	ACTGG	1 cut(s)	393
BssMI	GATC	4 cut(s)	4, 229, 532, 667
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	5 cut(s)	296, 479, 502, 550, 641
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	201, 286, 435
BstDEI	CTNAG	4 cut(s)	212, 372, 675, 773
BstF5I	GGATG	6 cut(s)	241, 305, 401, 575, 613, 670
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	7, 232, 535, 670
BstMAI	GTCTC	4 cut(s)	338, 340, 506, 716
BstMBI	GATC	4 cut(s)	4, 229, 532, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 502
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	2 cut(s)	203, 437
BstSCI	CCNGG	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	752
BstV1I	GCAGC	3 cut(s)	40, 394, 585
BstV2I	GAAGAC	2 cut(s)	153, 290
BstX2I	RGATCY	2 cut(s)	4, 532
BstYI	RGATCY	2 cut(s)	4, 532
BtrI	CACGTC	1 cut(s)	614
BtsCI	GGATG	6 cut(s)	241, 305, 401, 575, 613, 670
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	3 cut(s)	295, 381, 507
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	201, 286, 435
CfoI	GCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	4 cut(s)	200, 434, 460, 509
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	212, 372, 675, 773
DpnI	GATC	4 cut(s)	6, 231, 534, 669
DpnII	GATC	4 cut(s)	4, 229, 532, 667
DriI	GACNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	537
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	4 cut(s)	203, 437, 463, 512
FatI	CATG	4 cut(s)	199, 433, 459, 508
FauNDI	CATATG	2 cut(s)	586, 655
Fnu4HI	GCNGC	4 cut(s)	29, 51, 408, 574
FokI	GGATG	6 cut(s)	248, 292, 388, 582, 620, 657
Fsp4HI	GCNGC	4 cut(s)	29, 51, 408, 574
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	4 cut(s)	29, 51, 408, 574
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	203, 437, 463, 512
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	163, 348
Hpy188I	TCNGA	5 cut(s)	9, 125, 554, 618, 637
Hpy188III	TCNNGA	6 cut(s)	167, 233, 314, 358, 674, 709
HpyAV	CCTTC	4 cut(s)	574, 642, 706, 756
HpyCH4III	ACNGT	5 cut(s)	296, 479, 502, 550, 641
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	5 cut(s)	239, 426, 573, 611, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 502
HpyF3I	CTNAG	4 cut(s)	212, 372, 675, 773
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	4 cut(s)	203, 437, 463, 512
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	4 cut(s)	4, 229, 532, 667
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	5 cut(s)	86, 442, 448, 733, 793
Lsp1109I	GCAGC	3 cut(s)	40, 394, 585
LweI	GCATC	4 cut(s)	226, 271, 560, 598
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	2 cut(s)	290, 641
MalI	GATC	4 cut(s)	6, 231, 534, 669
MbiI	CCGCTC	2 cut(s)	40, 796
MboI	GATC	4 cut(s)	4, 229, 532, 667
MboII	GAAGA	4 cut(s)	25, 158, 232, 290
MflI	RGATCY	2 cut(s)	4, 532
MluCI	AATT	5 cut(s)	85, 119, 170, 324, 366
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	7 cut(s)	13, 101, 220, 321, 457, 655, 658
Mph1103I	ATGCAT	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	4 cut(s)	173, 429, 603, 805
MspA1I	CMGCKG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	37, 502
NdeI	CATATG	2 cut(s)	586, 655
NdeII	GATC	4 cut(s)	4, 229, 532, 667
NlaIII	CATG	4 cut(s)	203, 437, 463, 512
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	290, 641
NsiI	ATGCAT	1 cut(s)	241
NspI	RCATGY	2 cut(s)	203, 437
NspV	TTCGAA	1 cut(s)	144
PaeI	GCATGC	2 cut(s)	203, 437
PciSI	GCTCTTC	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	4 cut(s)	30, 52, 409, 575
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	4, 532
PsyI	GACNNNGTC	1 cut(s)	698
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	173, 429, 603, 805
SatI	GCNGC	4 cut(s)	29, 51, 408, 574
Sau3AI	GATC	4 cut(s)	4, 229, 532, 667
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	539
SfaNI	GCATC	4 cut(s)	226, 271, 560, 598
SfcI	CTRYAG	1 cut(s)	752
SfuI	TTCGAA	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	101, 312
SmoI	CTYRAG	2 cut(s)	101, 312
SphI	GCATGC	2 cut(s)	203, 437
Sse9I	AATT	5 cut(s)	85, 119, 170, 324, 366
SsiI	CCGC	6 cut(s)	40, 50, 61, 134, 405, 796
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	537
TaaI	ACNGT	5 cut(s)	296, 479, 502, 550, 641
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	36, 72, 144
TasI	AATT	5 cut(s)	85, 119, 170, 324, 366
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	4 cut(s)	173, 429, 603, 805
Tru9I	TTAA	4 cut(s)	173, 429, 603, 805
TscAI	CASTG	3 cut(s)	295, 388, 507
TseFI	GTSAC	2 cut(s)	290, 641
TseI	GCWGC	3 cut(s)	28, 407, 573
Tsp45I	GTSAC	2 cut(s)	290, 641
TspDTI	ATGAA	2 cut(s)	390, 448
TspRI	CASTG	3 cut(s)	295, 388, 507
Tth111I	GACNNNGTC	1 cut(s)	698
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	2 cut(s)	203, 437
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.