Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005081

Physical Location & Seq

Genomic Coordinates Forward (+)

15770947 .. 15773219

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10450.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGATCCGAAGCTCACAGAGGTCGCACAGCTCTTCGAGCGATTCAAAGCTGCATTCGTGCGGAACGATTTCGATACCTGCTCCAATTTCCTCTCCCAGCTTAAGGTTAAGCTGACCGAATTCGGAAGCCTACCACCGTTGTTTCAAAACACACCTAATGCTGCCAAGGAATTAACATTAGCAAGGGATATATATGAGCATGCTGTCGTGCTTAGTGTGAAGATTGAGGACCAGGATGCATTTGAAAGGGATTTCTTTCAGTTGAAGTCTTATTATGTAGACGCTCAGTACAATAGAATTGCTGAGTTCCACACTGAACTGGAACTTCTTTCATCTGCTGCTTTGGAGAACCCTTGCATTAAGCATGCTGTAGAGCTAGAGCAATCTTTCATGGAGGGAGCTTACAACCGTGTGTTGAGCGCTCGTCAGACTGTGCCACACGAGACTTATGTTTATTTCATGGATCTACTTGCTAAAACGGTCAGGGATGAGATAGCCGGATGCAGCGAGAAGGCATATGATTCACTCTCAATTAAGGATGCCCGTCAAATGTTGCTATTTCCTTCTGACCGCGAACTTTTGGCATTTGTCAGTGAGGATCATCCTGAGTGGGAGGTGAAGAATGATGCTGTCTATTTCCAGAAGGCAAAGGAGTCTGCACCTTGCAAAGAGATACCCTCTCTACAACTCATCAACCAAACTCTCAGCTACGCAAGAGAGTTGGAGCGGATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

246

Amino Acids

28.24

Weight (kDa)

4.9

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64520 AT5G42040
fragaria_vesca	FvH4_5g11650 FvH4_6g31620
malus_domestica	MD06G1111600.v1.1 MD14G1132800.v1.1
prunus_persica	Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1
pyrus_communis	pycom06g10450
rosa_chinensis	RchiOBHm_Chr2g0138681 RchiOBHm_Chr7g0186141
rosa_laevigata	RLG00000019755
rosa_multiflora	Rmu_co8118366.1_g000001 Rmu_sc0007053.1_g000010 Rmu_sc0020594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106010 Rroxscaffold_3G00268390
rosa_rugosa	Rorug02G0352200 Rorug06G0472300
rosa_samantha	Rh2AG401800 Rh2BG405800 Rh2CG388000 Rh2DG421900 Rh7AG069200 Rh7BG085200 Rh7CG078900 Rh7DG079000
rosa_wichuraiana	Rw2G032660 Rw7G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	727
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	573
AciI	CCGC	3 cut(s)	61, 571, 727
AclWI	GGATC	3 cut(s)	12, 471, 606
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	46, 146, 245, 265
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	8 cut(s)	13, 31, 50, 100, 112, 376, 401, 708
AluI	AGCT	8 cut(s)	13, 31, 50, 100, 112, 376, 401, 708
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	3 cut(s)	12, 471, 606
Aor51HI	AGCGCT	1 cut(s)	421
ApeKI	GCWGC	4 cut(s)	50, 161, 338, 504
ApoI	RAATTY	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	440
BbvI	GCAGC	4 cut(s)	37, 148, 325, 516
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	4 cut(s)	51, 162, 339, 505
BlsI	GCNGC	4 cut(s)	52, 163, 340, 506
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	4 cut(s)	226, 491, 529, 616
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	5 cut(s)	241, 493, 506, 544, 601
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	4 cut(s)	294, 299, 597, 718
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	4 cut(s)	37, 148, 325, 516
BseYI	CCCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	498
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	4, 463, 598
BspACI	CCGC	3 cut(s)	61, 571, 727
BspCNI	CTCAG	4 cut(s)	295, 298, 598, 717
BspFNI	CGCG	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	3 cut(s)	12, 471, 606
BspQI	GCTCTTC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	4, 463, 598
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	4 cut(s)	138, 410, 433, 481
Bst6I	CTCTTC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	201, 366
BstDEI	CTNAG	5 cut(s)	212, 285, 303, 606, 704
BstF5I	GGATG	5 cut(s)	241, 493, 506, 544, 601
BstFNI	CGCG	1 cut(s)	573
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	3 cut(s)	7, 466, 601
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	3 cut(s)	4, 463, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	203, 368
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	37, 148, 325, 516
BstX2I	RGATCY	2 cut(s)	4, 463
BstYI	RGATCY	2 cut(s)	4, 463
BtsCI	GGATG	5 cut(s)	241, 493, 506, 544, 601
BtsIMutI	CAGTG	2 cut(s)	312, 598
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	201, 366
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	200, 365, 391, 460
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	5 cut(s)	212, 285, 303, 606, 704
DpnI	GATC	3 cut(s)	6, 465, 600
DpnII	GATC	3 cut(s)	4, 463, 598
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	229
Eco47III	AGCGCT	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	203, 368, 394, 463
FatI	CATG	4 cut(s)	199, 364, 390, 459
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	51, 162, 339, 505
FokI	GGATG	5 cut(s)	248, 500, 513, 551, 588
Fsp4HI	GCNGC	4 cut(s)	51, 162, 339, 505
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	4 cut(s)	51, 162, 339, 505
GsaI	CCCAGC	1 cut(s)	100
HaeII	RGCGCY	1 cut(s)	423
HapII	CCGG	1 cut(s)	498
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	4 cut(s)	203, 368, 394, 463
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	42, 521, 653
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	9, 125, 429, 568
Hpy188III	TCNNGA	2 cut(s)	605, 640
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	505, 573, 637
HpyCH4III	ACNGT	4 cut(s)	138, 410, 433, 481
HpyCH4V	TGCA	6 cut(s)	53, 239, 357, 504, 659, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	5 cut(s)	212, 285, 303, 606, 704
Hsp92II	CATG	4 cut(s)	203, 368, 394, 463
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	4, 463, 598
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	86, 398, 724
LpnPI	CCDG	9 cut(s)	91, 110, 218, 245, 305, 469, 511, 618, 653
Lsp1109I	GCAGC	4 cut(s)	37, 148, 325, 516
LweI	GCATC	4 cut(s)	226, 491, 529, 616
MaeI	CTAG	1 cut(s)	377
MalI	GATC	3 cut(s)	6, 465, 600
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	3 cut(s)	4, 463, 598
MboII	GAAGA	3 cut(s)	25, 232, 631
MflI	RGATCY	2 cut(s)	4, 463
MluCI	AATT	5 cut(s)	85, 119, 170, 297, 531
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	7 cut(s)	13, 101, 220, 388, 589, 607, 688
Mph1103I	ATGCAT	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	5 cut(s)	102, 108, 173, 360, 534
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	3 cut(s)	4, 463, 598
NlaIII	CATG	4 cut(s)	203, 368, 394, 463
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	241
NspI	RCATGY	2 cut(s)	203, 368
PaeI	GCATGC	2 cut(s)	203, 368
PciSI	GCTCTTC	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	42, 521
PkrI	GCNGC	4 cut(s)	52, 163, 340, 506
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Psp6I	CCWGG	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	4, 463
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	5 cut(s)	102, 108, 173, 360, 534
SatI	GCNGC	4 cut(s)	51, 162, 339, 505
Sau3AI	GATC	3 cut(s)	4, 463, 598
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	1 cut(s)	233
SfaNI	GCATC	4 cut(s)	226, 491, 529, 616
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SphI	GCATGC	2 cut(s)	203, 368
Sse9I	AATT	5 cut(s)	85, 119, 170, 297, 531
SsiI	CCGC	3 cut(s)	61, 571, 727
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	4 cut(s)	138, 410, 433, 481
TaqI	TCGA	2 cut(s)	36, 72
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	5 cut(s)	85, 119, 170, 297, 531
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	42, 521
Tru1I	TTAA	5 cut(s)	102, 108, 173, 360, 534
Tru9I	TTAA	5 cut(s)	102, 108, 173, 360, 534
TscAI	CASTG	2 cut(s)	319, 598
TseI	GCWGC	4 cut(s)	50, 161, 338, 504
TspDTI	ATGAA	3 cut(s)	321, 379, 448
TspRI	CASTG	2 cut(s)	319, 598
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	2 cut(s)	203, 368
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.