Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020594.1

Orthogroup ID

OG0005081

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1373

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 620 bp

gggatatatatgagcatgctgttcttcttagtgtgaagactgaggatcaggatgcatttgagagggatttctttcagctgaagcattactacacagatgttcgtaaccgacttcctccatccacccaagagtacccaatcttaggcctcaacctgttgagactccttgtccagaatagaatagctgagttccacacagaactggaactgctctcctccgctgctttggagaacccttgcatcaagcatgcagtggagttggagcaatcctttatggagggagcttataatcgggtgttgcatgctcgacagacagtgccacatgaaacttatgtttatttcatggatctgctggcaaaaacagtcagggacgagatagctggctgcagtgagaaggcatatgattatctttcaattaaggacgcacaaaaaatgttgctgttcccttctgagcgtgaacttttggcctatatcaacgaggatcatcctgagtgggaagtaaagaatggcggggtctatttccagaaggccaaggagaccgccccttgcaaggagataccttctctgcagcttatcaaccaaactctcagttatgcaagagagttggagcggattgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

205

Amino Acids

23.9

Weight (kDa)

5.12

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64520 AT5G42040
fragaria_vesca	FvH4_5g11650 FvH4_6g31620
malus_domestica	MD06G1111600.v1.1 MD14G1132800.v1.1
prunus_persica	Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1 Prupe.5G124300_v2.0.a1
pyrus_communis	pycom06g10450
rosa_chinensis	RchiOBHm_Chr2g0138681 RchiOBHm_Chr7g0186141
rosa_laevigata	RLG00000019755
rosa_multiflora	Rmu_co8118366.1_g000001 Rmu_sc0007053.1_g000010 Rmu_sc0020594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106010 Rroxscaffold_3G00268390
rosa_rugosa	Rorug02G0352200 Rorug06G0472300
rosa_samantha	Rh2AG401800 Rh2BG405800 Rh2CG388000 Rh2DG421900 Rh7AG069200 Rh7BG085200 Rh7CG078900 Rh7DG079000
rosa_wichuraiana	Rw2G032660 Rw7G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	609
AciI	CCGC	4 cut(s)	218, 509, 539, 609
AclWI	GGATC	3 cut(s)	53, 353, 488
AcuI	CTGAAG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	142, 549
AgsI	TTSAA	1 cut(s)	413
AhdI	GACNNNNNGTC	1 cut(s)	166
AluBI	AGCT	5 cut(s)	78, 184, 283, 379, 570
AluI	AGCT	5 cut(s)	78, 184, 283, 379, 570
Alw26I	GTCTC	2 cut(s)	153, 529
AlwI	GGATC	3 cut(s)	53, 353, 488
AoxI	GGCC	3 cut(s)	144, 464, 527
ApeKI	GCWGC	3 cut(s)	220, 383, 567
BarI	GAAGNNNNNNTAC	2 cut(s)	73, 105
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	207, 370, 579
BccI	CCATC	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	153, 529
BfmI	CTRYAG	2 cut(s)	384, 565
BisI	GCNGC	3 cut(s)	221, 384, 568
BlsI	GCNGC	3 cut(s)	222, 385, 569
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmsI	GCATC	2 cut(s)	42, 248
BpiI	GAAGAC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 549
Bse1I	ACTGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	3 cut(s)	57, 118, 483
BseLI	CCNNNNNNNGG	2 cut(s)	142, 549
BseMII	CTCAG	5 cut(s)	32, 176, 440, 479, 600
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	3 cut(s)	207, 370, 579
BshFI	GGCC	3 cut(s)	146, 466, 529
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	142, 549
BsmAI	GTCTC	2 cut(s)	153, 529
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	146, 466, 529
Bso31I	GGTCTC	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	45, 345, 480
BspACI	CCGC	4 cut(s)	218, 509, 539, 609
BspANI	GGCC	3 cut(s)	146, 466, 529
BspCNI	CTCAG	5 cut(s)	33, 177, 441, 480, 599
BspMAI	CTGCAG	2 cut(s)	388, 569
BspPI	GGATC	3 cut(s)	53, 353, 488
BspTNI	GGTCTC	1 cut(s)	529
BsrBI	CCGCTC	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	3 cut(s)	45, 345, 480
BssT1I	CCWWGG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	315, 363
BstC8I	GCNNGC	5 cut(s)	17, 248, 302, 353, 381
BstDEI	CTNAG	7 cut(s)	28, 41, 141, 185, 449, 488, 586
BstF5I	GGATG	3 cut(s)	57, 118, 483
BstKTI	GATC	3 cut(s)	48, 348, 483
BstMAI	GTCTC	2 cut(s)	153, 529
BstMBI	GATC	3 cut(s)	45, 345, 480
BstNSI	RCATGY	3 cut(s)	19, 250, 304
BstSFI	CTRYAG	2 cut(s)	384, 565
BstV1I	GCAGC	3 cut(s)	207, 370, 579
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	146, 466, 529
BtsCI	GGATG	3 cut(s)	57, 118, 483
BtsI	GCAGTG	2 cut(s)	257, 393
BtsIMutI	CAGTG	3 cut(s)	257, 320, 393
Cac8I	GCNNGC	5 cut(s)	17, 248, 302, 353, 381
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	5 cut(s)	16, 247, 301, 322, 342
CviJI	RGCY	9 cut(s)	78, 146, 184, 283, 379, 383, 466, 529, 570
CviKI_1	RGCY	9 cut(s)	78, 146, 184, 283, 379, 383, 466, 529, 570
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	7 cut(s)	28, 41, 141, 185, 449, 488, 586
DpnI	GATC	3 cut(s)	47, 347, 482
DpnII	GATC	3 cut(s)	45, 345, 480
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	530
Eco147I	AGGCCT	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	530
EcoT22I	ATGCAT	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	5 cut(s)	19, 250, 304, 325, 345
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	5 cut(s)	15, 246, 300, 321, 341
FauI	CCCGC	1 cut(s)	502
FauNDI	CATATG	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	221, 384, 568
FokI	GGATG	3 cut(s)	64, 105, 470
Fsp4HI	GCNGC	3 cut(s)	221, 384, 568
GluI	GCNGC	3 cut(s)	221, 384, 568
HaeIII	GGCC	3 cut(s)	146, 466, 529
HgaI	GACGC	1 cut(s)	430
Hin1II	CATG	5 cut(s)	19, 250, 304, 325, 345
HinfI	GANTC	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	4 cut(s)	49, 171, 487, 522
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	4 cut(s)	387, 455, 519, 569
HpyCH4III	ACNGT	2 cut(s)	315, 363
HpyCH4V	TGCA	8 cut(s)	55, 239, 250, 300, 386, 548, 567, 595
HpyF3I	CTNAG	7 cut(s)	28, 41, 141, 185, 449, 488, 586
Hsp92II	CATG	5 cut(s)	19, 250, 304, 325, 345
Kzo9I	GATC	3 cut(s)	45, 345, 480
LmnI	GCTCC	3 cut(s)	261, 280, 606
LpnPI	CCDG	9 cut(s)	34, 166, 184, 187, 337, 351, 365, 500, 535
Lsp1109I	GCAGC	3 cut(s)	207, 370, 579
LweI	GCATC	2 cut(s)	42, 248
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	3 cut(s)	47, 347, 482
MbiI	CCGCTC	1 cut(s)	609
MboI	GATC	3 cut(s)	45, 345, 480
MboII	GAAGA	2 cut(s)	16, 48
MflI	RGATCY	1 cut(s)	345
MluCI	AATT	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	239, 584
MnlI	CCTC	7 cut(s)	36, 56, 125, 157, 225, 270, 471
Mph1103I	ATGCAT	1 cut(s)	57
MseI	TTAA	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	78, 220
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	3 cut(s)	45, 345, 480
NlaIII	CATG	5 cut(s)	19, 250, 304, 325, 345
NsiI	ATGCAT	1 cut(s)	57
NspI	RCATGY	3 cut(s)	19, 250, 304
PaeI	GCATGC	3 cut(s)	19, 250, 304
PceI	AGGCCT	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	222, 385, 569
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	287
PstI	CTGCAG	2 cut(s)	388, 569
PsuI	RGATCY	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	78
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	3 cut(s)	221, 384, 568
Sau3AI	GATC	3 cut(s)	45, 345, 480
SchI	GAGTC	1 cut(s)	155
SetI	ASST	7 cut(s)	80, 155, 186, 285, 381, 561, 572
SfaNI	GCATC	2 cut(s)	42, 248
SfcI	CTRYAG	2 cut(s)	384, 565
SphI	GCATGC	3 cut(s)	19, 250, 304
Sse9I	AATT	1 cut(s)	413
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	4 cut(s)	218, 509, 539, 609
StuI	AGGCCT	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	2 cut(s)	315, 363
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	3 cut(s)	257, 320, 393
TseI	GCWGC	3 cut(s)	220, 383, 567
TspDTI	ATGAA	2 cut(s)	330, 338
TspRI	CASTG	3 cut(s)	257, 320, 393
XceI	RCATGY	3 cut(s)	19, 250, 304
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.