Rh7DG079000

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005081
Physical Location & Seq
Forward (+)
6283109 .. 6286381
3273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG079000.1

Sequence Viewer

Length: 696 bp
ATGGCTTTAGATATAATTTCTAAAGTAAAGATAACACATTTTCTGCTGCAGAGCTATTGTTGGTTTTGTCCCTGTATGCAGTTAGAACGCTGTTTATTGTCTATCACTTTCTCAGTCCTTTTAAAATTTAATATTTTGGTTTACATGGTTTTAAAGGAATTTACATTTCTTTTGGACAGTAACCGACTTCCTCCATCCACCCAAGAGTACCCAATCTTAGGCCTCAACCTGTTGAGACTCCTTGTCCAGAATAGAATAGCTGAGTTCCACACAGAACTGGAACTGCTCTCCTCCGCTGCTTTGGAGAACCCTTGCATCAAGCATGCAGTGGAGTTGGAGCAATCCTTTATGGAGGGAGCTTATAATCGGGTGTTGCATGCTCGACAGACAGTGCCACATGAAACTTATGTTTATTTCATGGATCTGCTGGCAAAAACAGTCAGGGACGAGATAGCTGGCTGCAGTGAGAAGGCATATGATTATCTTTCAATTAAGGACGCACAAAAAATGTTGCTGTTCCCTTCTGAGCGTGAACTTTTGGCCTATATCAACGAGGATCATCCTGAGTGGGAAGTAAAGAATGGCGGGGTCTATTTCCAGAAGGCCAAGGAGACCGCCCCTTGCAAGGAGATACCTTCTCTGCAGCTTATCAACCAAACTCTCAGTTATGCAAGAGAGTTGGAGCGGATTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

231

Amino Acids

26.82

Weight (kDa)

5.58

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSN8_PSD8_EIF3K PF10075 70 - 205 5.5e-29 CSN8/PSMD8/EIF3K family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccBSI CCGCTC 1 cut(s) 685
AciI CCGC 4 cut(s) 294, 585, 615, 685
AclWI GGATC 2 cut(s) 429, 564
AcsI RAATTY 2 cut(s) 125, 158
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 218, 625
AgsI TTSAA 1 cut(s) 489
AhdI GACNNNNNGTC 1 cut(s) 242
AluBI AGCT 5 cut(s) 54, 260, 359, 455, 646
AluI AGCT 5 cut(s) 54, 260, 359, 455, 646
Alw26I GTCTC 2 cut(s) 229, 605
AlwI GGATC 2 cut(s) 429, 564
AoxI GGCC 3 cut(s) 220, 540, 603
ApeKI GCWGC 4 cut(s) 46, 296, 459, 643
ApoI RAATTY 2 cut(s) 125, 158
BbvI GCAGC 4 cut(s) 33, 283, 446, 655
BccI CCATC 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 229, 605
BfmI CTRYAG 3 cut(s) 47, 460, 641
BisI GCNGC 4 cut(s) 47, 297, 460, 644
BlsI GCNGC 4 cut(s) 48, 298, 461, 645
BmeRI GACNNNNNGTC 1 cut(s) 242
BmsI GCATC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 1 cut(s) 606
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 625
Bse1I ACTGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 2 cut(s) 194, 559
BseLI CCNNNNNNNGG 2 cut(s) 218, 625
BseMII CTCAG 5 cut(s) 126, 252, 516, 555, 676
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 4 cut(s) 33, 283, 446, 655
BshFI GGCC 3 cut(s) 222, 542, 605
BslFI GGGAC 2 cut(s) 54, 458
BslI CCNNNNNNNGG 2 cut(s) 218, 625
BsmAI GTCTC 2 cut(s) 229, 605
BsmFI GGGAC 2 cut(s) 54, 458
BsnI GGCC 3 cut(s) 222, 542, 605
Bso31I GGTCTC 1 cut(s) 605
Bsp143I GATC 2 cut(s) 421, 556
BspACI CCGC 4 cut(s) 294, 585, 615, 685
BspANI GGCC 3 cut(s) 222, 542, 605
BspCNI CTCAG 5 cut(s) 125, 253, 517, 556, 675
BspMAI CTGCAG 3 cut(s) 51, 464, 645
BspPI GGATC 2 cut(s) 429, 564
BspTNI GGTCTC 1 cut(s) 605
BsrBI CCGCTC 1 cut(s) 685
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 2 cut(s) 421, 556
BssT1I CCWWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 179, 391, 439
BstC8I GCNNGC 4 cut(s) 324, 378, 429, 457
BstDEI CTNAG 6 cut(s) 112, 217, 261, 525, 564, 662
BstF5I GGATG 2 cut(s) 194, 559
BstKTI GATC 2 cut(s) 424, 559
BstMAI GTCTC 2 cut(s) 229, 605
BstMBI GATC 2 cut(s) 421, 556
BstNSI RCATGY 2 cut(s) 326, 380
BstSFI CTRYAG 3 cut(s) 47, 460, 641
BstV1I GCAGC 4 cut(s) 33, 283, 446, 655
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 3 cut(s) 222, 542, 605
BtsCI GGATG 2 cut(s) 194, 559
BtsI GCAGTG 2 cut(s) 333, 469
BtsIMutI CAGTG 3 cut(s) 333, 396, 469
Cac8I GCNNGC 4 cut(s) 324, 378, 429, 457
CseI GACGC 1 cut(s) 506
Csp6I GTAC 1 cut(s) 208
CviAII CATG 5 cut(s) 145, 323, 377, 398, 418
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 6 cut(s) 112, 217, 261, 525, 564, 662
DpnI GATC 2 cut(s) 423, 558
DpnII GATC 2 cut(s) 421, 556
DraI TTTAAA 2 cut(s) 123, 153
DriI GACNNNNNGTC 1 cut(s) 242
Eam1105I GACNNNNNGTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 5 cut(s) 148, 326, 380, 401, 421
FaqI GGGAC 2 cut(s) 54, 458
FatI CATG 5 cut(s) 144, 322, 376, 397, 417
FauI CCCGC 1 cut(s) 578
FauNDI CATATG 1 cut(s) 475
Fnu4HI GCNGC 4 cut(s) 47, 297, 460, 644
FokI GGATG 2 cut(s) 181, 546
Fsp4HI GCNGC 4 cut(s) 47, 297, 460, 644
GluI GCNGC 4 cut(s) 47, 297, 460, 644
HaeIII GGCC 3 cut(s) 222, 542, 605
HgaI GACGC 1 cut(s) 506
Hin1II CATG 5 cut(s) 148, 326, 380, 401, 421
HinfI GANTC 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 142, 533
Hpy188I TCNGA 1 cut(s) 526
Hpy188III TCNNGA 3 cut(s) 247, 563, 598
Hpy8I GTNNAC 2 cut(s) 142, 533
HpyAV CCTTC 4 cut(s) 463, 531, 595, 645
HpyCH4III ACNGT 3 cut(s) 179, 391, 439
HpyCH4V TGCA 9 cut(s) 49, 79, 315, 326, 376, 462, 624, 643, 671
HpyF3I CTNAG 6 cut(s) 112, 217, 261, 525, 564, 662
Hsp92II CATG 5 cut(s) 148, 326, 380, 401, 421
Kzo9I GATC 2 cut(s) 421, 556
LmnI GCTCC 3 cut(s) 337, 356, 682
LpnPI CCDG 9 cut(s) 85, 242, 260, 263, 413, 427, 441, 576, 611
Lsp1109I GCAGC 4 cut(s) 33, 283, 446, 655
LweI GCATC 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 423, 558
MbiI CCGCTC 1 cut(s) 685
MboI GATC 2 cut(s) 421, 556
MflI RGATCY 1 cut(s) 421
MluCI AATT 4 cut(s) 15, 125, 158, 489
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 2 cut(s) 315, 660
MnlI CCTC 5 cut(s) 201, 233, 301, 346, 547
MseI TTAA 4 cut(s) 122, 129, 152, 492
MspA1I CMGCKG 1 cut(s) 296
NdeI CATATG 1 cut(s) 475
NdeII GATC 2 cut(s) 421, 556
NlaIII CATG 5 cut(s) 148, 326, 380, 401, 421
NspI RCATGY 2 cut(s) 326, 380
PaeI GCATGC 2 cut(s) 326, 380
PceI AGGCCT 1 cut(s) 222
PkrI GCNGC 4 cut(s) 48, 298, 461, 645
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PsiI TTATAA 1 cut(s) 363
PstI CTGCAG 3 cut(s) 51, 464, 645
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 4 cut(s) 122, 129, 152, 492
SatI GCNGC 4 cut(s) 47, 297, 460, 644
Sau3AI GATC 2 cut(s) 421, 556
SchI GAGTC 1 cut(s) 231
SetI ASST 7 cut(s) 56, 231, 262, 361, 457, 637, 648
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 3 cut(s) 47, 460, 641
SphI GCATGC 2 cut(s) 326, 380
Sse9I AATT 4 cut(s) 15, 125, 158, 489
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 4 cut(s) 294, 585, 615, 685
SspI AATATT 1 cut(s) 133
StuI AGGCCT 1 cut(s) 222
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 3 cut(s) 179, 391, 439
TaqI TCGA 1 cut(s) 382
TasI AATT 4 cut(s) 15, 125, 158, 489
Tru1I TTAA 4 cut(s) 122, 129, 152, 492
Tru9I TTAA 4 cut(s) 122, 129, 152, 492
TscAI CASTG 3 cut(s) 333, 396, 469
TseI GCWGC 4 cut(s) 46, 296, 459, 643
TspDTI ATGAA 2 cut(s) 406, 414
TspRI CASTG 3 cut(s) 333, 396, 469
XapI RAATTY 2 cut(s) 125, 158
XceI RCATGY 2 cut(s) 326, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.