Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Forward (+)

16915728 .. 16918569

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGCTTCTCTTGCAACAACCACCACTGGTTTCAACTAGATTTCACTCTCTCTACTTCCTCACTCACCACCACCACCACCACCACCGCTTCTTCCAACCACCAATCTCAGCTTTCTCTGCAACAACCTCTGCTTCTTTACCTTCACCATCTCCATCTTCTTCTTCTTCTTACTTCTCCTCATGGAATGGTTTAGATACAAATGAAGAAGAAGACAATGAATTCTCCTCCGAGGTTCACCGTCGCTACGACTTCTCTCCACTCCTAAAATTCCTCTCAAGATTCGGACCAGTCGAGTTAGCTCTAGATTCGGAATCGGAATCAGAAGCTTCACCGGAATCGCTTAATCCGGTAGAGTTCGATCTCGTCGAGTCATACAGAGCAGTACCAGCACCATACTGGCACTCTCTGATAAAATCGTTAACCTCATCAACATCATCTCTTGGTTTAGCTTACGCTGTAGTGTCATGGCTACAAAAACATAACCTCTGTTTCTCCTACGAGCTTCTTTACTCGATTCTCATCCACGCGCTTGGCCGTTCCGAGAAGCTTTACGAGGCGTTTCTTCTCTCTCAGAAACAAACGTTAACACCATTGACATACAATGCCTTGATTGGTGCTTGTGCTCGGAACAACGATATCGAAAAAGCTCTTAATTTGATCGCTAAGATGCGTCAAGACGGTTATCAATCCGATTTTGTTAACTATAGTTTGGTTATTCAGTCGTTGACTCGTAGCAATAAGATTGATTCTGTTATGTTGTTGAGATTGTATAAAGAGATTGAAAGAGATAAGCTTGAGCTTGATGTGCAGTTAGTTAATGATATTATTATGGGTTTTGCTAAGTCTGGTGATCCTTCTAAGGCTTTGCAGCTTCTTGGTATGGCTCAAGCGACGGGTTTGAGTGCGAAAACCGCTACTCTTGTATCGATTATCTCTGCGTTGGCGGATTCAGGGAGGACTTTGGAGGCTGAAGCTTTGTTTGAGGAGTTGAGACAGAGTGGGATTAAGCCTAGAACGAGAGCTTACAATGCGTTGCTTAAAGGGTATGTGAAGACGGGTCCTTTGAAAGACGCAGAGTCAATGGTTTCTGAGATGGAGAAGCGAGGTGTTTCGCCTGATGAACATACGTATAGTCTGCTTATCGATGCGTATGTTAATGCAGGTAGATGGGAAAGTGCGAGAATTGTGTTGAAAGAGATGGAAGCTGGTGATGTACAGCCTAATTCTTTTGTTTTCAGTAGACTCTTAGCTGGTTTTCGCGATAGAGGTGAATGGCAGAAGACATTTCAAGTTCTTAAAGAGATGAAGAGTATCGGTGTTAAGCCCGATAGACAGTTTTATAACGTGGTGATCGATACCTTTGGGAAGTTTAATTGTCTTGATCATGCCATGACGACTTTCGATAGAATGTTAAGCGAAGGTATTGAACCAGATAGGGTGACTTGGAATACGCTTATTGATTGTCATTGTAAGCATGGTCGGCATATCGTAGCGGAAGAGATGTTCGAGGCGATGGAGAGGCGAGGGTGTTTGCCTTGTGCTACAACTTATAACATTATGATCAATAGTTATGGTGATCAAGAAAGATGGGATGATATGAAAAGATTGTTGGGAAAGATGAAGAGCCAAGGTATCCTGCCTAATGTTGTGACACACACTACACTTGTCGACGTTTATGGCAAATCGGGTAGGTTTAATGATGCGATAGAGTGCTTGGAAGAGATGAAGTCGGTTGGGTTGAAACCATCATCGACCATGTACAATGCCCTCATCAATGCATATGCACAAAGGGGTTTATCGGAACAAGCTGTGAATGCATTTAGAGTGATGACATCGGATGGACTAAAGCCGAGTTTATTGGCTCTCAATTCGCTCATCAATGCCTTTGGTGAGGATAGAAGAGACGCTGAAGCCTTTGCCGTGTTACAGTACATGAAAGAAAATGGCGTAAAACCAGACGTGGTCACTTACACAACACTCATGAAAGCTCTCATTCGTGTTGATAAGTTTCAGAAGGTACCGGTTGTTTACGAGGAGATGATCATGTCAGGATGCAAACCAGATAGAAAAGCTAGATCCATGTTACGGTCAGCTCTAAGATACATGAAGCAGACGTTAAGAGCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

709

Amino Acids

80.0

Weight (kDa)

6.67

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	189 - 290	1.2e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	199 - 242	1.6e-07	PPR repeat family
PPR	PF01535	199 - 227	1.4e-06	PPR repeat
PPR_long	PF17177	245 - 389	3.9e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	326 - 386	8e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	339 - 385	2.4e-14	PPR repeat family
PPR	PF01535	341 - 370	3.6e-06	PPR repeat
TPR_24	PF23276	362 - 469	4.3e-10	Fungal tetratrico peptide repeats
PPR_long	PF17177	363 - 445	5.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	396 - 456	1.2e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	453 - 602	2.9e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	467 - 526	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	474 - 506	1.4e-09	PPR repeat
PPR_2	PF13041	477 - 522	1e-13	PPR repeat family
PPR	PF01535	480 - 510	2.3e-09	PPR repeat
TPR_24	PF23276	490 - 608	3.2e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	512 - 559	1.6e-11	PPR repeat family
PPR_3	PF13812	535 - 596	2.5e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	544 - 576	1.3e-08	PPR repeat
PPR_2	PF13041	547 - 584	1.2e-07	PPR repeat family
PPR	PF01535	550 - 579	6.7e-06	PPR repeat
TPR_24	PF23276	568 - 679	1.7e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	582 - 629	9.4e-08	PPR repeat family
PPR_3	PF13812	586 - 631	2.1e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	591 - 670	2e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	608 - 663	5.4e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	618 - 665	1.3e-11	PPR repeat family
PPR_3	PF13812	641 - 688	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	652 - 690	5.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1341, 1551
Acc36I	ACCTGC	1 cut(s)	1151
Acc65I	GGTACC	1 cut(s)	2017
AccB1I	GGYRCC	1 cut(s)	2017
AccI	GTMKAC	2 cut(s)	1240, 1668
AccII	CGCG	2 cut(s)	527, 1260
AciI	CCGC	4 cut(s)	85, 912, 944, 1493
AclI	AACGTT	1 cut(s)	581
AclWI	GGATC	2 cut(s)	845, 2070
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	2 cut(s)	218, 266
AcuI	CTGAAG	2 cut(s)	990, 1929
AfaI	GTAC	5 cut(s)	384, 1215, 1760, 1931, 2019
AfiI	CCNNNNNNNGG	1 cut(s)	2085
AgeI	ACCGGT	1 cut(s)	2020
AgsI	TTSAA	7 cut(s)	33, 782, 1066, 1192, 1289, 1427, 1741
AhdI	GACNNNNNGTC	1 cut(s)	1075
AjiI	CACGTC	1 cut(s)	1960
AjuI	GAANNNNNNNTTGG	2 cut(s)	1592, 1624
AloI	GAACNNNNNNTCC	2 cut(s)	1487, 1519
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	2 cut(s)	985, 1896
AlwI	GGATC	2 cut(s)	845, 2070
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	1 cut(s)	868
ApoI	RAATTY	2 cut(s)	218, 266
ArsI	GACNNNNNNTTYG	2 cut(s)	1045, 1077
AsiGI	ACCGGT	1 cut(s)	2020
Asp718I	GGTACC	1 cut(s)	2017
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	2 cut(s)	284, 1058
AvaII	GGWCC	2 cut(s)	284, 1058
BaeI	ACNNNNGTAYC	2 cut(s)	906, 939
BanI	GGYRCC	1 cut(s)	2017
BbsI	GAAGAC	3 cut(s)	216, 1058, 1286
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	1 cut(s)	880
BccI	CCATC	9 cut(s)	154, 160, 1087, 1161, 1192, 1507, 1581, 1753, 1832
BceAI	ACGGC	2 cut(s)	519, 1904
BciVI	GTATCC	1 cut(s)	1643
BclI	TGATCA	4 cut(s)	1381, 1560, 1576, 2040
BcoDI	GTCTC	2 cut(s)	985, 1896
BfaI	CTAG	4 cut(s)	36, 302, 1011, 2073
BfmI	CTRYAG	2 cut(s)	456, 703
BfuAI	ACCTGC	1 cut(s)	1151
BfuI	GTATCC	1 cut(s)	1643
BisI	GCNGC	1 cut(s)	869
BlsI	GCNGC	1 cut(s)	870
Bme18I	GGWCC	2 cut(s)	284, 1058
BmeRI	GACNNNNNGTC	1 cut(s)	1075
BmgBI	CACGTC	1 cut(s)	1960
BmgT120I	GGNCC	2 cut(s)	284, 1058
BmiI	GGNNCC	2 cut(s)	1059, 2019
BmsI	GCATC	4 cut(s)	657, 1135, 1690, 2042
BpiI	GAAGAC	3 cut(s)	216, 1058, 1286
BpuEI	CTTGAG	3 cut(s)	259, 815, 870
Bsa29I	ATCGAT	3 cut(s)	926, 1143, 1353
BsaAI	YACGTR	1 cut(s)	1128
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	2 cut(s)	228, 1627
BsaWI	WCCGGW	3 cut(s)	331, 346, 2020
Bsc4I	CCNNNNNNNGG	1 cut(s)	2085
Bse118I	RCCGGY	1 cut(s)	2020
Bse1I	ACTGG	3 cut(s)	30, 287, 401
Bse8I	GATNNNNATC	1 cut(s)	518
BseCI	ATCGAT	3 cut(s)	926, 1143, 1353
BseDI	CCNNGG	2 cut(s)	228, 1627
BseGI	GGATG	4 cut(s)	519, 1597, 1843, 2057
BseJI	GATNNNNATC	1 cut(s)	518
BseLI	CCNNNNNNNGG	1 cut(s)	2085
BseMII	CTCAG	3 cut(s)	120, 584, 1080
BseNI	ACTGG	3 cut(s)	30, 287, 401
BseRI	GAGGAG	4 cut(s)	166, 214, 998, 2048
BseXI	GCAGC	1 cut(s)	880
BsgI	GTGCAG	1 cut(s)	827
Bsh1236I	CGCG	2 cut(s)	527, 1260
BshFI	GGCC	1 cut(s)	534
BshNI	GGYRCC	1 cut(s)	2017
BshTI	ACCGGT	1 cut(s)	2020
BshVI	ATCGAT	3 cut(s)	926, 1143, 1353
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	332, 347, 2021
BslI	CCNNNNNNNGG	1 cut(s)	2085
BsmAI	GTCTC	2 cut(s)	985, 1896
BsmBI	CGTCTC	1 cut(s)	1896
BsmI	GAATGC	1 cut(s)	1819
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp1407I	TGTACA	2 cut(s)	1213, 1758
Bsp143I	GATC	9 cut(s)	358, 657, 850, 1350, 1381, 1560, 1576, 2040, 2075
Bsp68I	TCGCGA	1 cut(s)	1260
BspACI	CCGC	4 cut(s)	85, 912, 944, 1493
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	3 cut(s)	119, 583, 1081
BspDI	ATCGAT	3 cut(s)	926, 1143, 1353
BspFNI	CGCG	2 cut(s)	527, 1260
BspHI	TCATGA	1 cut(s)	1980
BspLI	GGNNCC	2 cut(s)	1059, 2019
BspMI	ACCTGC	1 cut(s)	1151
BspPI	GGATC	2 cut(s)	845, 2070
BspQI	GCTCTTC	1 cut(s)	1616
BspT107I	GGYRCC	1 cut(s)	2017
BsrFI	RCCGGY	1 cut(s)	2020
BsrGI	TGTACA	2 cut(s)	1213, 1758
BsrI	ACTGG	3 cut(s)	30, 287, 401
BssAI	RCCGGY	1 cut(s)	2020
BssECI	CCNNGG	2 cut(s)	228, 1627
BssMI	GATC	9 cut(s)	358, 657, 850, 1350, 1381, 1560, 1576, 2040, 2075
BssT1I	CCWWGG	1 cut(s)	1627
Bst4CI	ACNGT	5 cut(s)	239, 680, 1335, 1929, 2088
Bst6I	CTCTTC	5 cut(s)	1301, 1491, 1616, 1713, 1894
BstAUI	TGTACA	2 cut(s)	1213, 1758
BstBAI	YACGTR	1 cut(s)	1128
BstDEI	CTNAG	8 cut(s)	106, 570, 663, 840, 858, 1089, 1246, 2096
BstF5I	GGATG	4 cut(s)	519, 1597, 1843, 2057
BstFNI	CGCG	2 cut(s)	527, 1260
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	9 cut(s)	361, 660, 853, 1353, 1384, 1563, 1579, 2043, 2078
BstMAI	GTCTC	2 cut(s)	985, 1896
BstMBI	GATC	9 cut(s)	358, 657, 850, 1350, 1381, 1560, 1576, 2040, 2075
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 116, 386, 805, 911, 1028, 1480, 1814
BstSFI	CTRYAG	2 cut(s)	456, 703
BstSNI	TACGTA	1 cut(s)	1128
BstUI	CGCG	2 cut(s)	527, 1260
BstV1I	GCAGC	1 cut(s)	880
BstV2I	GAAGAC	3 cut(s)	216, 1058, 1286
BstX2I	RGATCY	1 cut(s)	2075
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	2075
Bsu15I	ATCGAT	3 cut(s)	926, 1143, 1353
BsuI	GTATCC	1 cut(s)	1643
BsuRI	GGCC	1 cut(s)	534
BsuTUI	ATCGAT	3 cut(s)	926, 1143, 1353
BtgZI	GCGATG	1 cut(s)	1526
BtrI	CACGTC	1 cut(s)	1960
BtsCI	GGATG	4 cut(s)	519, 1597, 1843, 2057
BtsIMutI	CAGTG	1 cut(s)	23
BtuMI	TCGCGA	1 cut(s)	1260
BveI	ACCTGC	1 cut(s)	1151
CciI	TCATGA	1 cut(s)	1980
CfoI	GCGC	1 cut(s)	529
Cfr10I	RCCGGY	1 cut(s)	2020
Cfr13I	GGNCC	2 cut(s)	284, 1058
ClaI	ATCGAT	3 cut(s)	926, 1143, 1353
CseI	GACGC	3 cut(s)	659, 1079, 1913
Csp6I	GTAC	5 cut(s)	383, 1214, 1759, 1930, 2018
CspAI	ACCGGT	1 cut(s)	2020
CviQI	GTAC	5 cut(s)	383, 1214, 1759, 1930, 2018
DdeI	CTNAG	8 cut(s)	106, 570, 663, 840, 858, 1089, 1246, 2096
DpnI	GATC	9 cut(s)	360, 659, 852, 1352, 1383, 1562, 1578, 2042, 2077
DpnII	GATC	9 cut(s)	358, 657, 850, 1350, 1381, 1560, 1576, 2040, 2075
DriI	GACNNNNNGTC	1 cut(s)	1075
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	5 cut(s)	1301, 1491, 1616, 1713, 1894
Eam1105I	GACNNNNNGTC	1 cut(s)	1075
EarI	CTCTTC	5 cut(s)	1301, 1491, 1616, 1713, 1894
EciI	GGCGGA	1 cut(s)	959
Eco105I	TACGTA	1 cut(s)	1128
Eco130I	CCWWGG	1 cut(s)	1627
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	284, 1058
Eco57I	CTGAAG	2 cut(s)	990, 1929
EcoO109I	RGGNCCY	1 cut(s)	1058
EcoRI	GAATTC	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	1627
EcoT22I	ATGCAT	2 cut(s)	1780, 1819
ErhI	CCWWGG	1 cut(s)	1627
Esp3I	CGTCTC	1 cut(s)	1896
FauNDI	CATATG	1 cut(s)	1780
FbaI	TGATCA	4 cut(s)	1381, 1560, 1576, 2040
FblI	GTMKAC	2 cut(s)	1240, 1668
Fnu4HI	GCNGC	1 cut(s)	869
FokI	GGATG	4 cut(s)	506, 1604, 1850, 2064
Fsp4HI	GCNGC	1 cut(s)	869
FspBI	CTAG	4 cut(s)	36, 302, 1011, 2073
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	869
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	3 cut(s)	332, 347, 2021
HgaI	GACGC	3 cut(s)	659, 1079, 1913
HhaI	GCGC	1 cut(s)	529
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HincII	GTYRAC	5 cut(s)	420, 585, 700, 726, 1669
HindII	GTYRAC	5 cut(s)	420, 585, 700, 726, 1669
HindIII	AAGCTT	4 cut(s)	324, 545, 791, 972
HpaI	GTTAAC	3 cut(s)	420, 585, 700
HpaII	CCGG	3 cut(s)	332, 347, 2021
Hpy166II	GTNNAC	8 cut(s)	235, 420, 585, 700, 726, 1241, 1669, 2029
Hpy188III	TCNNGA	8 cut(s)	276, 302, 674, 1259, 1379, 1580, 1981, 2049
Hpy8I	GTNNAC	8 cut(s)	235, 420, 585, 700, 726, 1241, 1669, 2029
Hpy99I	CGWCG	4 cut(s)	243, 368, 895, 1673
HpyAV	CCTTC	4 cut(s)	150, 864, 1412, 2008
HpyCH4III	ACNGT	5 cut(s)	239, 680, 1335, 1929, 2088
HpyCH4IV	ACGT	6 cut(s)	581, 1127, 1344, 1671, 1959, 2114
HpyCH4V	TGCA	9 cut(s)	13, 119, 808, 868, 1160, 1778, 1784, 1817, 2055
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 116, 386, 805, 911, 1028, 1480, 1814
HpyF3I	CTNAG	8 cut(s)	106, 570, 663, 840, 858, 1089, 1246, 2096
HpySE526I	ACGT	6 cut(s)	581, 1127, 1344, 1671, 1959, 2114
HspAI	GCGC	1 cut(s)	527
KpnI	GGTACC	1 cut(s)	2021
Ksp22I	TGATCA	4 cut(s)	1381, 1560, 1576, 2040
KspAI	GTTAAC	3 cut(s)	420, 585, 700
Kzo9I	GATC	9 cut(s)	358, 657, 850, 1350, 1381, 1560, 1576, 2040, 2075
LguI	GCTCTTC	1 cut(s)	1616
Lsp1109I	GCAGC	1 cut(s)	880
LweI	GCATC	4 cut(s)	657, 1135, 1690, 2042
MaeI	CTAG	4 cut(s)	36, 302, 1011, 2073
MaeII	ACGT	6 cut(s)	581, 1127, 1344, 1671, 1959, 2114
MaeIII	GTNAC	5 cut(s)	1438, 1648, 1923, 1963, 2082
MalI	GATC	9 cut(s)	360, 659, 852, 1352, 1383, 1562, 1578, 2042, 2077
MboI	GATC	9 cut(s)	358, 657, 850, 1350, 1381, 1560, 1576, 2040, 2075
MflI	RGATCY	1 cut(s)	2075
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	7 cut(s)	218, 266, 652, 1182, 1222, 1372, 1867
MlyI	GAGTC	4 cut(s)	377, 721, 1085, 1236
MmeI	TCCRAC	1 cut(s)	118
Mph1103I	ATGCAT	2 cut(s)	1780, 1819
MspI	CCGG	3 cut(s)	332, 347, 2021
Mva1269I	GAATGC	1 cut(s)	1819
MvnI	CGCG	2 cut(s)	527, 1260
MwoI	GCNNNNNNNGC	8 cut(s)	10, 116, 386, 805, 911, 1028, 1480, 1814
NdeI	CATATG	1 cut(s)	1780
NdeII	GATC	9 cut(s)	358, 657, 850, 1350, 1381, 1560, 1576, 2040, 2075
NlaIV	GGNNCC	2 cut(s)	1059, 2019
NmeAIII	GCCGAG	1 cut(s)	1875
NmuCI	GTSAC	3 cut(s)	1438, 1648, 1963
NruI	TCGCGA	1 cut(s)	1260
NsiI	ATGCAT	2 cut(s)	1780, 1819
PagI	TCATGA	1 cut(s)	1980
PciSI	GCTCTTC	1 cut(s)	1616
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 363, 1350
PctI	GAATGC	1 cut(s)	1819
PfeI	GAWTC	8 cut(s)	279, 305, 311, 317, 335, 514, 746, 947
PflFI	GACNNNGTC	1 cut(s)	1961
PinAI	ACCGGT	1 cut(s)	2020
PkrI	GCNGC	1 cut(s)	870
PleI	GAGTC	4 cut(s)	376, 721, 1084, 1236
PpsI	GAGTC	4 cut(s)	376, 721, 1084, 1236
Ppu21I	YACGTR	1 cut(s)	1128
PpuMI	RGGWCCY	1 cut(s)	1058
PsiI	TTATAA	2 cut(s)	1341, 1551
Psp1406I	AACGTT	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	1058
PspN4I	GGNNCC	2 cut(s)	1059, 2019
PspPI	GGNCC	2 cut(s)	284, 1058
PspPPI	RGGWCCY	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	2075
PsyI	GACNNNGTC	1 cut(s)	1961
RruI	TCGCGA	1 cut(s)	1260
RsaI	GTAC	5 cut(s)	384, 1215, 1760, 1931, 2019
RsaNI	GTAC	5 cut(s)	383, 1214, 1759, 1930, 2018
SalI	GTCGAC	1 cut(s)	1667
SapI	GCTCTTC	1 cut(s)	1616
SatI	GCNGC	1 cut(s)	869
Sau3AI	GATC	9 cut(s)	358, 657, 850, 1350, 1381, 1560, 1576, 2040, 2075
Sau96I	GGNCC	2 cut(s)	284, 1058
SchI	GAGTC	4 cut(s)	377, 721, 1085, 1236
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	4 cut(s)	657, 1135, 1690, 2042
SfcI	CTRYAG	2 cut(s)	456, 703
SinI	GGWCC	2 cut(s)	284, 1058
SmlI	CTYRAG	3 cut(s)	274, 794, 885
SmoI	CTYRAG	3 cut(s)	274, 794, 885
SnaBI	TACGTA	1 cut(s)	1128
Sse9I	AATT	7 cut(s)	218, 266, 652, 1182, 1222, 1372, 1867
SsiI	CCGC	4 cut(s)	85, 912, 944, 1493
SspMI	CTAG	4 cut(s)	36, 302, 1011, 2073
StyI	CCWWGG	1 cut(s)	1627
TaaI	ACNGT	5 cut(s)	239, 680, 1335, 1929, 2088
TaiI	ACGT	6 cut(s)	584, 1130, 1347, 1674, 1962, 2117
TasI	AATT	7 cut(s)	218, 266, 652, 1182, 1222, 1372, 1867
TatI	WGTACW	3 cut(s)	1213, 1758, 1929
TfiI	GAWTC	8 cut(s)	279, 305, 311, 317, 335, 514, 746, 947
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	3 cut(s)	1438, 1648, 1963
TseI	GCWGC	1 cut(s)	868
Tsp45I	GTSAC	3 cut(s)	1438, 1648, 1963
TspRI	CASTG	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	1961
VpaK11BI	GGWCC	2 cut(s)	284, 1058
XapI	RAATTY	2 cut(s)	218, 266
XbaI	TCTAGA	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XmiI	GTMKAC	2 cut(s)	1240, 1668
XspI	CTAG	4 cut(s)	36, 302, 1011, 2073
Zsp2I	ATGCAT	2 cut(s)	1780, 1819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.