pycom15g00100

Pentatricopeptide repeat-containing protein At5g42310

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
64595 .. 66050
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00100.1

Sequence Viewer

Length: 1035 bp
ATGGAGAAGAGCGGCATTTCCCCCGATGAGCACACTTACAGCCTGCTCATTGATGCCTACGCGAATGCGGGCAGGTGGGAAAGCACAAGAATTGTGTTGAAAGAGATGGAAGCTGGCAATGTGCAGACCAATTCTTATGTTTTCAGCAGGATTTTAGCCAGCTACCGCGATAGAGGGGAGTGGCAAAAGTCGTTCCAAGTTTTGAGGGAGATGAAGAGCAGTGGAGCAAGACCTGATAGGCATTTTTACAATGTCATGATTGACACTTTTGGAAAGTCCAATTGTATCGATCATGCTATGGCTACCCTTGAAAGGATGCTATCTGAGGGAATCCACCCAGACACTGTCACCTGGAATACGCTTATAGATTGTCATTGCAAGTCAAGCCGCTATGTAAGGGCAGAGGAGCTGTTTGAGGAAATGCAGCAAAATGGGTGTGCCCCTTGCGCCACCACCTATAACATCATGATCAATTCCTTTGGGGAGCAGCAAAGGTGGGATGATGTGAAAGGCTTGTTGGGGAAGATGCAGGCTCAGGGTTTACTGCCCAACATAGTTACGTATACCACATTGGTTGACATTTATGGAAAGTCGGGGAGATTTACTGATGCAATAGAGTGTTTGGAGGTTATGAAGTCTGCAGGCATGAAACCATCCCCGGCAATGTACAATGCCGTAATTAATGCCTATGCACAAAGAGGTTTGTCAGAGCAAGCACTGAACGCATTTAAGGTAATGAGAGCAGATGGATTAAAACCCAGTCCCTTGGCTCTCAATTCGTTAATCAATGCGTTTGGTGAAGATAGAAGGGATACTGAGGCCTTTTCTGTGTTGCAGTACATGAAGGAAAATGACCTGAAACCATATGTAGTTACGTATACTACACTTATGAAAACCTTTATCCGTGTTGCTAAATTTTATAAGGTTCCAGCAGTGTATGAAGAAATGATTATGTCTGGTTGCACTCCAGATAGGAAAGCTAGGGCTATGTTAAGGTCTGCGCTGAAATACATGAAACAGACACTCAGATCCTAA

Protein Analysis

345

Amino Acids

39.09

Weight (kDa)

8.53

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 2 - 101 1.5e-08 Fungal tetratrico peptide repeats
TPR_24 PF23276 32 - 140 5.2e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 32 - 92 5.7e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 45 - 91 4e-06 PPR repeat family
TPR_24 PF23276 65 - 164 2.4e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 78 - 117 4e-06 PPR repeat family
PPR_long PF17177 83 - 237 1.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 104 - 162 3.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 110 - 142 1.3e-11 PPR repeat
PPR_2 PF13041 113 - 160 7e-17 PPR repeat family
PPR PF01535 116 - 146 4.9e-10 PPR repeat
PPR_2 PF13041 148 - 193 5.4e-10 PPR repeat family
PPR_3 PF13812 172 - 232 8.5e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 180 - 212 1.6e-07 PPR repeat
PPR_2 PF13041 183 - 219 1e-07 PPR repeat family
PPR PF01535 186 - 215 3.2e-06 PPR repeat
PPR_long PF17177 204 - 326 2.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 221 - 265 1.9e-07 PPR repeat family
PPR_3 PF13812 222 - 267 5.8e-06 Pentatricopeptide repeat domain
TPR_24 PF23276 225 - 301 2.2e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 246 - 300 2.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 258 - 300 1.4e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AarI CACCTGC 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 63
AccBSI CCGCTC 1 cut(s) 12
AccI GTMKAC 2 cut(s) 563, 878
AccII CGCG 2 cut(s) 62, 168
AciI CCGC 4 cut(s) 12, 68, 166, 388
AclWI GGATC 1 cut(s) 1023
AcsI RAATTY 1 cut(s) 914
AfaI GTAC 2 cut(s) 668, 839
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 2 cut(s) 100, 311
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 4 cut(s) 113, 162, 409, 980
AluI AGCT 4 cut(s) 113, 162, 409, 980
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 1 cut(s) 1023
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 1 cut(s) 819
ApeKI GCWGC 2 cut(s) 424, 487
ApoI RAATTY 1 cut(s) 914
AseI ATTAAT 1 cut(s) 681
AspLEI GCGC 2 cut(s) 449, 1003
AsuC2I CCSGG 1 cut(s) 659
AsuHPI GGTGA 2 cut(s) 340, 809
BaeGI GKGCMC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 436, 499
BccI CCATC 3 cut(s) 100, 661, 740
BceAI ACGGC 1 cut(s) 659
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 805
BclI TGATCA 1 cut(s) 468
BcnI CCSGG 1 cut(s) 659
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 1 cut(s) 639
BfuAI ACCTGC 1 cut(s) 63
BfuI GTATCC 1 cut(s) 805
BisI GCNGC 4 cut(s) 13, 388, 425, 488
BlsI GCNGC 4 cut(s) 14, 389, 426, 489
Bme1390I CCNGG 2 cut(s) 352, 659
BmiI GGNNCC 1 cut(s) 927
BmrFI CCNGG 2 cut(s) 352, 659
BmrI ACTGGG 1 cut(s) 753
BmsI GCATC 4 cut(s) 43, 306, 516, 598
BmuI ACTGGG 1 cut(s) 753
BpmI CTGGAG 1 cut(s) 951
Bpu10I CCTNAGC 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 659
Bsa29I ATCGAT 1 cut(s) 288
BsaAI YACGTR 2 cut(s) 561, 876
BsaJI CCNNGG 2 cut(s) 657, 765
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 759
Bse3DI GCAATG 3 cut(s) 124, 373, 669
BseBI CCWGG 1 cut(s) 352
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 657, 765
BseGI GGATG 3 cut(s) 321, 505, 653
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 3 cut(s) 124, 373, 669
BseMII CTCAG 3 cut(s) 315, 548, 807
BseNI ACTGG 1 cut(s) 759
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 2 cut(s) 436, 499
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 62, 168
BshFI GGCC 1 cut(s) 821
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 747
BslI CCNNNNNNNGG 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 747
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 1 cut(s) 821
Bsp1286I GDGCHC 2 cut(s) 33, 442
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 3 cut(s) 289, 468, 1028
BspACI CCGC 4 cut(s) 12, 68, 166, 388
BspANI GGCC 1 cut(s) 821
BspCNI CTCAG 3 cut(s) 316, 547, 808
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 2 cut(s) 62, 168
BspHI TCATGA 2 cut(s) 255, 465
BspLI GGNNCC 1 cut(s) 927
BspMAI CTGCAG 1 cut(s) 643
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 1023
BspQI GCTCTTC 2 cut(s) 2, 209
BsrBI CCGCTC 1 cut(s) 12
BsrDI GCAATG 3 cut(s) 124, 373, 669
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 759
BssECI CCNNGG 2 cut(s) 657, 765
BssMI GATC 3 cut(s) 289, 468, 1028
BssNAI GTATAC 2 cut(s) 564, 879
BssT1I CCWWGG 1 cut(s) 765
Bst1107I GTATAC 2 cut(s) 564, 879
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 2, 209
BstAUI TGTACA 1 cut(s) 666
BstBAI YACGTR 2 cut(s) 561, 876
BstC8I GCNNGC 7 cut(s) 44, 70, 115, 160, 531, 643, 714
BstDEI CTNAG 4 cut(s) 324, 534, 816, 1025
BstF5I GGATG 3 cut(s) 321, 505, 653
BstFNI CGCG 2 cut(s) 62, 168
BstHHI GCGC 2 cut(s) 449, 1003
BstKTI GATC 3 cut(s) 292, 471, 1031
BstMBI GATC 3 cut(s) 289, 468, 1028
BstMWI GCNNNNNNNGC 3 cut(s) 384, 446, 722
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 350, 657
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 442
BstSNI TACGTA 2 cut(s) 561, 876
BstUI CGCG 2 cut(s) 62, 168
BstV1I GCAGC 2 cut(s) 436, 499
BstX2I RGATCY 1 cut(s) 1028
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 1 cut(s) 1028
BstZ17I GTATAC 2 cut(s) 564, 879
Bsu15I ATCGAT 1 cut(s) 288
BsuI GTATCC 1 cut(s) 805
BsuRI GGCC 1 cut(s) 821
BsuTUI ATCGAT 1 cut(s) 288
BtsCI GGATG 3 cut(s) 321, 505, 653
BtsI GCAGTG 2 cut(s) 226, 939
BtsIMutI CAGTG 4 cut(s) 226, 342, 716, 939
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 7 cut(s) 44, 70, 115, 160, 531, 643, 714
CaiI CAGNNNCTG 1 cut(s) 344
CciI TCATGA 2 cut(s) 255, 465
CfoI GCGC 2 cut(s) 449, 1003
ClaI ATCGAT 1 cut(s) 288
Csp6I GTAC 2 cut(s) 667, 838
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 6 cut(s) 256, 293, 466, 646, 841, 1012
CviQI GTAC 2 cut(s) 667, 838
DdeI CTNAG 4 cut(s) 324, 534, 816, 1025
DpnI GATC 3 cut(s) 291, 470, 1030
DpnII GATC 3 cut(s) 289, 468, 1028
Eam1104I CTCTTC 2 cut(s) 2, 209
EarI CTCTTC 2 cut(s) 2, 209
Eco105I TACGTA 2 cut(s) 561, 876
Eco130I CCWWGG 1 cut(s) 765
Eco147I AGGCCT 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 6 cut(s) 259, 296, 469, 649, 844, 1015
FaqI GGGAC 1 cut(s) 747
FatI CATG 6 cut(s) 255, 292, 465, 645, 840, 1011
FauI CCCGC 1 cut(s) 61
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 1 cut(s) 468
FblI GTMKAC 2 cut(s) 563, 878
Fnu4HI GCNGC 4 cut(s) 13, 388, 425, 488
FokI GGATG 3 cut(s) 328, 512, 640
Fsp4HI GCNGC 4 cut(s) 13, 388, 425, 488
FspBI CTAG 1 cut(s) 981
GlaI GCGC 2 cut(s) 448, 1002
GluI GCNGC 4 cut(s) 13, 388, 425, 488
GsuI CTGGAG 1 cut(s) 951
HaeIII GGCC 1 cut(s) 821
HapII CCGG 1 cut(s) 659
HhaI GCGC 2 cut(s) 449, 1003
Hin1II CATG 6 cut(s) 259, 296, 469, 649, 844, 1015
Hin6I GCGC 2 cut(s) 447, 1001
HinP1I GCGC 2 cut(s) 447, 1001
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 1 cut(s) 330
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 340, 809
Hpy166II GTNNAC 4 cut(s) 542, 564, 577, 879
Hpy188I TCNGA 3 cut(s) 325, 709, 1028
Hpy188III TCNNGA 3 cut(s) 256, 466, 968
Hpy8I GTNNAC 4 cut(s) 542, 564, 577, 879
HpyAV CCTTC 2 cut(s) 801, 838
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 560, 875
HpyCH4V TGCA 9 cut(s) 124, 378, 424, 529, 611, 641, 692, 835, 963
HpyF10VI GCNNNNNNNGC 3 cut(s) 384, 446, 722
HpyF3I CTNAG 4 cut(s) 324, 534, 816, 1025
HpySE526I ACGT 2 cut(s) 560, 875
Hsp92II CATG 6 cut(s) 259, 296, 469, 649, 844, 1015
HspAI GCGC 2 cut(s) 447, 1001
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 3 cut(s) 289, 468, 1028
LguI GCTCTTC 2 cut(s) 2, 209
LmnI GCTCC 3 cut(s) 224, 406, 484
Lsp1109I GCAGC 2 cut(s) 436, 499
LweI GCATC 4 cut(s) 43, 306, 516, 598
MaeI CTAG 1 cut(s) 981
MaeII ACGT 2 cut(s) 560, 875
MaeIII GTNAC 3 cut(s) 346, 556, 871
MalI GATC 3 cut(s) 291, 470, 1030
MbiI CCGCTC 1 cut(s) 12
MboI GATC 3 cut(s) 289, 468, 1028
MboII GAAGA 5 cut(s) 19, 226, 535, 812, 953
MfeI CAATTG 1 cut(s) 280
MflI RGATCY 1 cut(s) 1028
MhlI GDGCHC 2 cut(s) 33, 442
MluCI AATT 7 cut(s) 90, 130, 280, 472, 678, 775, 914
MnlI CCTC 8 cut(s) 167, 198, 319, 397, 409, 619, 692, 811
MseI TTAA 5 cut(s) 681, 729, 752, 782, 992
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 2 cut(s) 352, 659
MunI CAATTG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 1 cut(s) 352
MvnI CGCG 2 cut(s) 62, 168
MwoI GCNNNNNNNGC 3 cut(s) 384, 446, 722
NciI CCSGG 1 cut(s) 659
NdeI CATATG 1 cut(s) 865
NdeII GATC 3 cut(s) 289, 468, 1028
NlaIII CATG 6 cut(s) 259, 296, 469, 649, 844, 1015
NlaIV GGNNCC 1 cut(s) 927
NmuCI GTSAC 1 cut(s) 346
PagI TCATGA 2 cut(s) 255, 465
PaqCI CACCTGC 1 cut(s) 63
PceI AGGCCT 1 cut(s) 821
PciSI GCTCTTC 2 cut(s) 2, 209
PctI GAATGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 330
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 4 cut(s) 14, 389, 426, 489
Ppu21I YACGTR 2 cut(s) 561, 876
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 921
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 927
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 1028
PsyI GACNNNGTC 1 cut(s) 344
RsaI GTAC 2 cut(s) 668, 839
RsaNI GTAC 2 cut(s) 667, 838
SapI GCTCTTC 2 cut(s) 2, 209
SaqAI TTAA 5 cut(s) 681, 729, 752, 782, 992
SatI GCNGC 4 cut(s) 13, 388, 425, 488
Sau3AI GATC 3 cut(s) 289, 468, 1028
ScrFI CCNGG 2 cut(s) 352, 659
SduI GDGCHC 2 cut(s) 33, 442
SfaNI GCATC 4 cut(s) 43, 306, 516, 598
SfcI CTRYAG 1 cut(s) 639
SnaBI TACGTA 2 cut(s) 561, 876
Sse9I AATT 7 cut(s) 90, 130, 280, 472, 678, 775, 914
SseBI AGGCCT 1 cut(s) 821
SsiI CCGC 4 cut(s) 12, 68, 166, 388
SspMI CTAG 1 cut(s) 981
StuI AGGCCT 1 cut(s) 821
StyD4I CCNGG 2 cut(s) 350, 657
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 563, 878
TaqI TCGA 1 cut(s) 288
TasI AATT 7 cut(s) 90, 130, 280, 472, 678, 775, 914
TatI WGTACW 2 cut(s) 666, 837
TauI GCSGC 2 cut(s) 15, 390
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 5 cut(s) 681, 729, 752, 782, 992
Tru9I TTAA 5 cut(s) 681, 729, 752, 782, 992
TscAI CASTG 4 cut(s) 226, 349, 723, 939
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 424, 487
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 7 cut(s) 227, 647, 662, 857, 905, 954, 1028
TspGWI ACGGA 1 cut(s) 893
TspRI CASTG 4 cut(s) 226, 349, 723, 939
Tth111I GACNNNGTC 1 cut(s) 344
VspI ATTAAT 1 cut(s) 681
XapI RAATTY 1 cut(s) 914
XmiI GTMKAC 2 cut(s) 563, 878
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.