Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Reverse (-)

21092105 .. 21092741

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTACTTATTTGCTGGCGTGTCCCATATGAGACCCACCAAAAATATTTCTTGTCAGCGGATAACAACATCAACGTGTTGAAGCTTTATAAGGAGATTGAGTCTGATAATGTTGAAATTGATGGACAATTGTTTAATGATTTGATTGTTGGTTTCACAAAAGCCGGTAGGCCTAGCCAGGCTATACATTTTCTTGCCATGGTGCCGGTCAGTGGTTTGAGCCCGAAAACCGCCACATTAGTGGCCGTTATTTCAGCTTTGAGGAATGTCGGTAGGGTGGTTGAGGCTGAAGCTATTTTCGAGGAAATGAAAGAGGGTGGGTTGCAACCGAGGACTAGAGCTTACAATAAAGAAATATTGCGAGACGTCAGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

126

Amino Acids

14.05

Weight (kDa)

6.73

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AatII	GACGTC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	2 cut(s)	59, 231
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	366
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	82, 116
AjnI	CCWGG	1 cut(s)	177
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	4 cut(s)	85, 257, 293, 341
AluI	AGCT	4 cut(s)	85, 257, 293, 341
Alw26I	GTCTC	2 cut(s)	26, 357
AoxI	GGCC	2 cut(s)	170, 243
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	224
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	26, 357
BfaI	CTAG	2 cut(s)	174, 336
Bme1390I	CCNGG	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	198, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	2 cut(s)	164, 205
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	198, 329
BseLI	CCNNNNNNNGG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	172, 245
BshNI	GGYRCC	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	165, 206
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	26, 357
BsmBI	CGTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	172, 245
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	2 cut(s)	59, 231
BspANI	GGCC	2 cut(s)	172, 245
BspLI	GGNNCC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	26
BsrFI	RCCGGY	2 cut(s)	164, 205
BssAI	RCCGGY	2 cut(s)	164, 205
BssECI	CCNNGG	2 cut(s)	198, 329
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	198
BstMAI	GTCTC	2 cut(s)	26, 357
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	172, 245
BtgI	CCRYGG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	17
Cfr10I	RCCGGY	2 cut(s)	164, 205
CviAII	CATG	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	1 cut(s)	202
FaiI	YATR	5 cut(s)	28, 30, 90, 185, 200
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	1 cut(s)	198
FauNDI	CATATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	174, 336
HaeIII	GGCC	2 cut(s)	172, 245
HapII	CCGG	2 cut(s)	165, 206
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	2 cut(s)	165, 206
Hpy188I	TCNGA	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	75, 366
HpyCH4V	TGCA	1 cut(s)	325
HpySE526I	ACGT	2 cut(s)	75, 366
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	202
LpnPI	CCDG	4 cut(s)	164, 178, 191, 219
MaeI	CTAG	2 cut(s)	174, 336
MaeII	ACGT	2 cut(s)	75, 366
MaeIII	GTNAC	1 cut(s)	3
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	2 cut(s)	117, 128
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	5 cut(s)	255, 277, 295, 307, 324
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	74, 239
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	2 cut(s)	165, 206
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	28
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	172
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PsiI	TTATAA	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	204
RseI	CAYNNNNRTG	2 cut(s)	74, 239
SaqAI	TTAA	1 cut(s)	135
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	6 cut(s)	78, 87, 259, 295, 343, 369
SmiMI	CAYNNNNRTG	2 cut(s)	74, 239
Sse9I	AATT	2 cut(s)	117, 128
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	59, 231
SspI	AATATT	2 cut(s)	47, 357
SspMI	CTAG	2 cut(s)	174, 336
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	2 cut(s)	78, 369
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	117, 128
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	217
XspI	CTAG	2 cut(s)	174, 336
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.