Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Forward (+)

62569146 .. 62571854

Gene Structure 2709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G038420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGAGCTCCTCTACTCCATCCTCATCCACGCGCTCGGACCGGCAGACGTTGACTCCGTTGACCTACAACGCTCTCATCGGCGCGTGCGCTCGCAACGGCGACCTGGAGAAGGCGCTCAATTTGATGTCCAGGATGCGCCAGGACGGTTACCGGTCGGATTTCGTGAATTACAGCCTGGTAATTCAGTCGCTTAATCGCTCAAACAAGGTTGATTCTCCAATTATGTTAAAGCTTTACAGGGAGATTGAGTCTGAGAATGTTGAGATTGATGGACAGCTGCTAAATGATTTGATTGTTGGTTTCGCAAAAGCCGGCGAGCCCAGCCAGGCTATGCATTTTCTTGCCATGGTGCAGGCTAGTGGTTTGAGCCCCAAAACTGCCACTCTGGTGGCGGTTATTTCAGCTTTGGGGAACTCCGGTAGGGTGGTTGAGGCGGAAGCTATTTTCGAGGAAATGAAAGAGGGTGGGTTGCAACCGAGGACTAGAGCTTACAATGCACTGCTGAAAGGGTATGTGAAGGCAGCTTCTTTGGAAGATGCTGAATCCATTCACACTTACAGCCTCCTCATTGATGCTTATGCCAATGCCGGTAGGTGGGAGAGTGCGAGAATTGTGTTGAAGGAGATGGAGGCTAGCAATGTGCAGCCTAATTCGTATGTTTTCAGTAGGATTTTAGCTAGTTATCGGGATAGGGGGGAGTGGCAGAAGTCTTTTCAAGTTTTGAGGGAGATGAGGAGCAGTGGGGTAATGCCTGATAGGCATTTTTACAATGTGATGATTGATACTTTTGGAAAGTCTAATTGTCTTGATCATGCTATGGCTACCTTTGAAAGGATGCTATCGGAGGGGATTCAGCCAGATACTGTTACCTGGAATACTCTCATTGATAGTCATTGTAAGTCAGGCCACCATGTAAGGGCAGAGGAGTTGTTTGAGGAAATGCAGGAGAGTGGTTGCGCGCCTTGTGCCACCACCTTTAACATCATGATAAACTCCTTAGGAGAGCAGGAGAGATGGGATGAAGTGAAGGGCCTAATGGGGAAGATGCAGAGTCAGGGTTTACTTCCGAATATAGTTACTTATACCACGTTAGTTGACATATATGGGAAGTCGGGGAGATTTAATGATGCAATAGAGTGCTTGGAGATAATGAAGTCTGCAGGCATGAAACCATCCCCGACAATGTATAATGCCTTGATTAATGCCTATGCTCAAAGGGGTTTGTCTGAGCAAGCACTGAATGCATTCAGGGTTATGAGAGCAGACGGCTTGAAACCTAGTCTATTAGCTCTCAATTCATTAATTAATGCATTTGGCGAAGATAGGAGGGATGCTGAGGCCTTTTCCGTGTTGCAGTACATGAAGGACAATGATGTAAACCCAGACGTGGTTACATATACTACACTTATGAAAGCCCTTATTCGCGTCGATAAATTTTATAAGGTTCCAGATGTGTATGAAGAAATGATCCACTCTAGGGTTACTCCTGATAGGAAAGCTAGGGCAATGTTACGGATTATTACTATAAAGATTTTGCAGGAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

515

Amino Acids

57.72

Weight (kDa)

6.01

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 64	7.6e-08	PPR repeat family
PPR	PF01535	21 - 49	3e-08	PPR repeat
PPR_long	PF17177	68 - 184	1.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	125 - 173	1.7e-07	PPR repeat family
PPR_2	PF13041	182 - 224	6.9e-08	PPR repeat family
TPR_24	PF23276	184 - 278	2.9e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	185 - 253	8.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	205 - 265	1.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	251 - 290	6.3e-07	PPR repeat family
PPR_long	PF17177	257 - 411	3.9e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	277 - 335	2.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	283 - 315	7.6e-12	PPR repeat
PPR_2	PF13041	286 - 333	1.8e-16	PPR repeat family
PPR	PF01535	289 - 319	1.9e-10	PPR repeat
PPR_2	PF13041	321 - 366	1.1e-09	PPR repeat family
PPR_3	PF13812	346 - 405	1.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	353 - 385	1.2e-07	PPR repeat
PPR_2	PF13041	356 - 392	5e-08	PPR repeat family
PPR	PF01535	359 - 388	3.4e-06	PPR repeat
PPR_3	PF13812	388 - 440	2.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	394 - 438	2e-07	PPR repeat family
TPR_24	PF23276	396 - 488	7e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	427 - 474	1.8e-10	PPR repeat family
PPR_2	PF13041	461 - 498	2.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1440
AccII	CGCG	4 cut(s)	31, 83, 959, 1425
AciI	CCGC	2 cut(s)	392, 434
AclWI	GGATC	1 cut(s)	1462
AcsI	RAATTY	1 cut(s)	1433
AfaI	GTAC	1 cut(s)	1358
AfiI	CCNNNNNNNGG	6 cut(s)	109, 594, 831, 916, 1387, 1477
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	619, 716, 830, 1273
AjiI	CACGTC	1 cut(s)	1387
AjnI	CCWGG	6 cut(s)	102, 128, 138, 174, 324, 869
AleI	CACNNNNGTG	1 cut(s)	386
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	1462
AlwNI	CAGNNNCTG	1 cut(s)	863
AoxI	GGCC	3 cut(s)	904, 1030, 1338
ApeKI	GCWGC	3 cut(s)	277, 521, 643
ApoI	RAATTY	1 cut(s)	1433
AseI	ATTAAT	3 cut(s)	1200, 1301, 1305
AsiGI	ACCGGT	1 cut(s)	150
Asp700I	GAANNNNTTC	2 cut(s)	546, 1244
AspLEI	GCGC	7 cut(s)	33, 83, 89, 115, 138, 959, 961
AspS9I	GGNCC	2 cut(s)	37, 1030
AsuNHI	GCTAGC	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	997
BanII	GRGCYC	3 cut(s)	8, 321, 371
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	1335
BbvI	GCAGC	3 cut(s)	264, 533, 655
BccI	CCATC	5 cut(s)	25, 263, 619, 1008, 1180
BceAI	ACGGC	2 cut(s)	112, 1282
BciT130I	CCWGG	6 cut(s)	104, 130, 140, 176, 326, 871
BclI	TGATCA	1 cut(s)	808
BfaI	CTAG	7 cut(s)	357, 483, 633, 678, 1278, 1476, 1500
BfmI	CTRYAG	1 cut(s)	1158
BfoI	RGCGCY	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	757
BisI	GCNGC	3 cut(s)	278, 522, 644
BlsI	GCNGC	3 cut(s)	279, 523, 645
Bme1390I	CCNGG	6 cut(s)	104, 130, 140, 176, 326, 871
Bme18I	GGWCC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	1387
BmgT120I	GGNCC	2 cut(s)	37, 1030
BmiI	GGNNCC	1 cut(s)	1446
BmrFI	CCNGG	6 cut(s)	104, 130, 140, 176, 326, 871
BmsI	GCATC	7 cut(s)	123, 526, 562, 825, 1035, 1117, 1321
BmtI	GCTAGC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	1335
BsaJI	CCNNGG	2 cut(s)	345, 476
BsaWI	WCCGGW	2 cut(s)	150, 416
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	109, 594, 831, 916, 1387, 1477
Bse118I	RCCGGY	4 cut(s)	39, 150, 311, 587
Bse21I	CCTNAGG	1 cut(s)	997
Bse3DI	GCAATG	2 cut(s)	643, 1512
BseBI	CCWGG	6 cut(s)	104, 130, 140, 176, 326, 871
BseDI	CCNNGG	2 cut(s)	345, 476
BseGI	GGATG	7 cut(s)	17, 23, 138, 840, 1024, 1172, 1336
BseLI	CCNNNNNNNGG	6 cut(s)	109, 594, 831, 916, 1387, 1477
BseMI	GCAATG	2 cut(s)	643, 1512
BseMII	CTCAG	3 cut(s)	243, 1218, 1326
BsePI	GCGCGC	1 cut(s)	957
BseRI	GAGGAG	3 cut(s)	554, 748, 938
BseXI	GCAGC	3 cut(s)	264, 533, 655
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	2 cut(s)	371, 662
Bsh1236I	CGCG	4 cut(s)	31, 83, 959, 1425
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	906, 1032, 1340
BshTI	ACCGGT	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	5 cut(s)	40, 151, 312, 417, 588
BslI	CCNNNNNNNGG	6 cut(s)	109, 594, 831, 916, 1387, 1477
BsmI	GAATGC	2 cut(s)	1244, 1246
BsnI	GGCC	3 cut(s)	906, 1032, 1340
Bsp1286I	GDGCHC	3 cut(s)	8, 321, 371
Bsp143I	GATC	2 cut(s)	808, 1467
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	2 cut(s)	392, 434
BspANI	GGCC	3 cut(s)	906, 1032, 1340
BspCNI	CTCAG	3 cut(s)	244, 1219, 1327
BspFNI	CGCG	4 cut(s)	31, 83, 959, 1425
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	1 cut(s)	1446
BspMAI	CTGCAG	1 cut(s)	1162
BspOI	GCTAGC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	1462
BsrDI	GCAATG	2 cut(s)	643, 1512
BsrFI	RCCGGY	4 cut(s)	39, 150, 311, 587
BssAI	RCCGGY	4 cut(s)	39, 150, 311, 587
BssECI	CCNNGG	2 cut(s)	345, 476
BssHII	GCGCGC	1 cut(s)	957
BssMI	GATC	2 cut(s)	808, 1467
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	6 cut(s)	104, 130, 140, 176, 326, 871
Bst4CI	ACNGT	2 cut(s)	146, 865
BstAPI	GCANNNNNTGC	1 cut(s)	1241
BstC8I	GCNNGC	9 cut(s)	85, 91, 313, 317, 354, 634, 959, 1162, 1233
BstDEI	CTNAG	4 cut(s)	252, 997, 1227, 1335
BstDSI	CCRYGG	1 cut(s)	345
BstEII	GGTNACC	1 cut(s)	146
BstENI	CCTNNNNNAGG	2 cut(s)	107, 829
BstF5I	GGATG	7 cut(s)	17, 23, 138, 840, 1024, 1172, 1336
BstFNI	CGCG	4 cut(s)	31, 83, 959, 1425
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	7 cut(s)	33, 83, 89, 115, 138, 959, 961
BstKTI	GATC	2 cut(s)	811, 1470
BstMBI	GATC	2 cut(s)	808, 1467
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	5 cut(s)	321, 494, 757, 965, 1241
BstNI	CCWGG	6 cut(s)	104, 130, 140, 176, 326, 871
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	6 cut(s)	102, 128, 138, 174, 324, 869
BstSFI	CTRYAG	1 cut(s)	1158
BstUI	CGCG	4 cut(s)	31, 83, 959, 1425
BstV1I	GCAGC	3 cut(s)	264, 533, 655
BstXI	CCANNNNNNTGG	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	997
BsuRI	GGCC	3 cut(s)	906, 1032, 1340
BtgI	CCRYGG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	1387
BtsCI	GGATG	7 cut(s)	17, 23, 138, 840, 1024, 1172, 1336
BtsI	GCAGTG	2 cut(s)	497, 745
BtsIMutI	CAGTG	3 cut(s)	497, 745, 1235
Cac8I	GCNNGC	9 cut(s)	85, 91, 313, 317, 354, 634, 959, 1162, 1233
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	984
CfoI	GCGC	7 cut(s)	33, 83, 89, 115, 138, 959, 961
Cfr10I	RCCGGY	4 cut(s)	39, 150, 311, 587
Cfr13I	GGNCC	2 cut(s)	37, 1030
CpoI	CGGWCCG	1 cut(s)	37
CseI	GACGC	1 cut(s)	1414
Csp6I	GTAC	1 cut(s)	1357
CspAI	ACCGGT	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	1075, 1110
CspI	CGGWCCG	1 cut(s)	37
CviAII	CATG	6 cut(s)	346, 812, 911, 985, 1165, 1360
CviQI	GTAC	1 cut(s)	1357
DdeI	CTNAG	4 cut(s)	252, 997, 1227, 1335
DpnI	GATC	2 cut(s)	810, 1469
DpnII	GATC	2 cut(s)	808, 1467
EciI	GGCGGA	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	345
Eco147I	AGGCCT	1 cut(s)	1340
Eco24I	GRGCYC	3 cut(s)	8, 321, 371
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	997
Eco91I	GGTNACC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	2 cut(s)	107, 829
EcoO109I	RGGNCCY	1 cut(s)	1030
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	6 cut(s)	102, 128, 138, 174, 324, 869
EcoT14I	CCWWGG	1 cut(s)	345
EcoT22I	ATGCAT	3 cut(s)	336, 1246, 1312
EcoT38I	GRGCYC	3 cut(s)	8, 321, 371
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	6 cut(s)	349, 815, 914, 988, 1168, 1363
FatI	CATG	6 cut(s)	345, 811, 910, 984, 1164, 1359
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	3 cut(s)	278, 522, 644
FokI	GGATG	7 cut(s)	4, 10, 145, 847, 1031, 1159, 1343
FriOI	GRGCYC	3 cut(s)	8, 321, 371
Fsp4HI	GCNGC	3 cut(s)	278, 522, 644
FspBI	CTAG	7 cut(s)	357, 483, 633, 678, 1278, 1476, 1500
GlaI	GCGC	7 cut(s)	32, 82, 88, 114, 137, 958, 960
GluI	GCNGC	3 cut(s)	278, 522, 644
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	906, 1032, 1340
HapII	CCGG	5 cut(s)	40, 151, 312, 417, 588
HgaI	GACGC	1 cut(s)	1414
HhaI	GCGC	7 cut(s)	33, 83, 89, 115, 138, 959, 961
Hin1II	CATG	6 cut(s)	349, 815, 914, 988, 1168, 1363
Hin6I	GCGC	7 cut(s)	31, 81, 87, 113, 136, 957, 959
HinP1I	GCGC	7 cut(s)	31, 81, 87, 113, 136, 957, 959
HincII	GTYRAC	3 cut(s)	51, 60, 1096
HindII	GTYRAC	3 cut(s)	51, 60, 1096
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	6 cut(s)	52, 212, 248, 542, 850, 1051
HpaII	CCGG	5 cut(s)	40, 151, 312, 417, 588
Hpy166II	GTNNAC	5 cut(s)	51, 60, 1061, 1096, 1378
Hpy188I	TCNGA	6 cut(s)	37, 157, 253, 844, 1068, 1228
Hpy188III	TCNNGA	6 cut(s)	163, 686, 806, 985, 1448, 1487
Hpy8I	GTNNAC	5 cut(s)	51, 60, 1061, 1096, 1378
Hpy99I	CGWCG	1 cut(s)	1430
HpyAV	CCTTC	5 cut(s)	103, 511, 613, 1021, 1357
HpyCH4III	ACNGT	2 cut(s)	146, 865
HpyCH4IV	ACGT	3 cut(s)	47, 1088, 1386
HpyF10VI	GCNNNNNNNGC	5 cut(s)	321, 494, 757, 965, 1241
HpyF3I	CTNAG	4 cut(s)	252, 997, 1227, 1335
HpySE526I	ACGT	3 cut(s)	47, 1088, 1386
Hsp92II	CATG	6 cut(s)	349, 815, 914, 988, 1168, 1363
HspAI	GCGC	7 cut(s)	31, 81, 87, 113, 136, 957, 959
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	2 cut(s)	808, 1467
LmnI	GCTCC	2 cut(s)	11, 735
Lsp1109I	GCAGC	3 cut(s)	264, 533, 655
LweI	GCATC	7 cut(s)	123, 526, 562, 825, 1035, 1117, 1321
MaeI	CTAG	7 cut(s)	357, 483, 633, 678, 1278, 1476, 1500
MaeII	ACGT	3 cut(s)	47, 1088, 1386
MaeIII	GTNAC	6 cut(s)	146, 865, 1075, 1390, 1480, 1509
MalI	GATC	2 cut(s)	810, 1469
MboI	GATC	2 cut(s)	808, 1467
MboII	GAAGA	4 cut(s)	545, 1054, 1331, 1472
MhlI	GDGCHC	3 cut(s)	8, 321, 371
MlyI	GAGTC	3 cut(s)	46, 257, 1060
MmeI	TCCRAC	1 cut(s)	135
Mph1103I	ATGCAT	3 cut(s)	336, 1246, 1312
MroNI	GCCGGC	1 cut(s)	311
MroXI	GAANNNNTTC	2 cut(s)	546, 1244
MseI	TTAA	7 cut(s)	192, 227, 978, 1122, 1200, 1301, 1305
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	5 cut(s)	40, 151, 312, 417, 588
MspR9I	CCNGG	6 cut(s)	104, 130, 140, 176, 326, 871
Mva1269I	GAATGC	2 cut(s)	1244, 1246
MvaI	CCWGG	6 cut(s)	104, 130, 140, 176, 326, 871
MvnI	CGCG	4 cut(s)	31, 83, 959, 1425
MwoI	GCNNNNNNNGC	5 cut(s)	321, 494, 757, 965, 1241
NaeI	GCCGGC	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	808, 1467
NgoMIV	GCCGGC	1 cut(s)	311
NheI	GCTAGC	1 cut(s)	632
NlaIII	CATG	6 cut(s)	349, 815, 914, 988, 1168, 1363
NlaIV	GGNNCC	1 cut(s)	1446
NsiI	ATGCAT	3 cut(s)	336, 1246, 1312
OliI	CACNNNNGTG	1 cut(s)	386
PacI	TTAATTAA	1 cut(s)	1305
PagI	TCATGA	1 cut(s)	984
PauI	GCGCGC	1 cut(s)	957
PceI	AGGCCT	1 cut(s)	1340
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	2 cut(s)	1244, 1246
PdiI	GCCGGC	1 cut(s)	313
PdmI	GAANNNNTTC	2 cut(s)	546, 1244
PfeI	GAWTC	3 cut(s)	212, 542, 850
PfoI	TCCNGGA	1 cut(s)	128
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	3 cut(s)	279, 523, 645
PleI	GAGTC	3 cut(s)	46, 256, 1059
PpsI	GAGTC	3 cut(s)	46, 256, 1059
PshBI	ATTAAT	3 cut(s)	1200, 1301, 1305
PsiI	TTATAA	1 cut(s)	1440
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	6 cut(s)	102, 128, 138, 174, 324, 869
PspEI	GGTNACC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	6 cut(s)	102, 128, 138, 174, 324, 869
PspN4I	GGNNCC	1 cut(s)	1446
PspPI	GGNCC	2 cut(s)	37, 1030
PstI	CTGCAG	1 cut(s)	1162
PstNI	CAGNNNCTG	1 cut(s)	863
PteI	GCGCGC	1 cut(s)	957
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	1358
RsaNI	GTAC	1 cut(s)	1357
RseI	CAYNNNNRTG	1 cut(s)	386
Rsr2I	CGGWCCG	1 cut(s)	37
RsrII	CGGWCCG	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	7 cut(s)	192, 227, 978, 1122, 1200, 1301, 1305
SatI	GCNGC	3 cut(s)	278, 522, 644
Sau3AI	GATC	2 cut(s)	808, 1467
Sau96I	GGNCC	2 cut(s)	37, 1030
SchI	GAGTC	3 cut(s)	46, 257, 1060
ScrFI	CCNGG	6 cut(s)	104, 130, 140, 176, 326, 871
SduI	GDGCHC	3 cut(s)	8, 321, 371
SfaNI	GCATC	7 cut(s)	123, 526, 562, 825, 1035, 1117, 1321
SfcI	CTRYAG	1 cut(s)	1158
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	386
SseBI	AGGCCT	1 cut(s)	1340
SsiI	CCGC	2 cut(s)	392, 434
SspMI	CTAG	7 cut(s)	357, 483, 633, 678, 1278, 1476, 1500
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	1340
StyD4I	CCNGG	6 cut(s)	102, 128, 138, 174, 324, 869
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	146, 865
TaiI	ACGT	3 cut(s)	50, 1091, 1389
TaqI	TCGA	2 cut(s)	447, 1428
TatI	WGTACW	1 cut(s)	1356
TfiI	GAWTC	3 cut(s)	212, 542, 850
Tru1I	TTAA	7 cut(s)	192, 227, 978, 1122, 1200, 1301, 1305
Tru9I	TTAA	7 cut(s)	192, 227, 978, 1122, 1200, 1301, 1305
TscAI	CASTG	3 cut(s)	504, 745, 1242
TseI	GCWGC	3 cut(s)	277, 521, 643
TspDTI	ATGAA	8 cut(s)	470, 1035, 1166, 1181, 1287, 1376, 1424, 1473
TspGWI	ACGGA	3 cut(s)	45, 1336, 1528
TspRI	CASTG	3 cut(s)	504, 745, 1242
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	3 cut(s)	1200, 1301, 1305
XagI	CCTNNNNNAGG	2 cut(s)	107, 829
XapI	RAATTY	1 cut(s)	1433
XmnI	GAANNNNTTC	2 cut(s)	546, 1244
XspI	CTAG	7 cut(s)	357, 483, 633, 678, 1278, 1476, 1500
Zsp2I	ATGCAT	3 cut(s)	336, 1246, 1312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.