Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Forward (+)

63627579 .. 63631309

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27336

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGCTTCTTCTGCCTCTGCCTGGTTCCACCCGATTCCCATCCGTTCAATTATCTTCGTCTCCGATACTCATCCGCCACCACCTCCACCACCACCACATCTTCCACGCGCCTCCCTCCGCCGTTTCCACTTCCGCCGAATCTCATCTCCCCCCAATTTCATCCTCACGACGTCGTTTGGATAACTACGACACCGACCAGGCCGCCGTTTCCCGCTACGACTTCGCTCCACTGCTCGCCTTCCTCTCCACCTCGTCCAGCTCCACTCATGACGACATTGACTCGGCGTCGCCGACGTCACTCGACCCCGCCGAGTTCCAGCTGGCCGAGTCGTACCGGGCCGTCCCGGCCCCTCTCTGGCACTCCCTCCTCAAATCCCTCTGCTCCTCCTCCTCCTCCTCCTCCTTGAAACAGGCCTACGCGCTCGTTTCGTGGCTCCAGAAGCACAACCTCTGCTTCTCCTATGAGCTCCTCTACTCCATCCTCATCCACGCGCTCGGACGCTCCGAGAAGCTCTACGAGGCGTTCCTGCTCTCGCAGCGGCAGACGTTGACTCCGTTGACCTACAACGCTCTCATCGGCGCGTGCGCTCGCAACGGCGACCTGGAGAAGGCGCTCAATTTGATGTCCAGGATGCGCCAGGACGGTTACCGGTCGGATTTCGTGAATTACAGCCTGGTAATTCAGTCGCTTAATCGCTCAAACAAGGTTGATTCTCCAATTATGTTAAAGCTTTACAGGGAGATTGAGTCTGAGAATGTTGAGATTGATGGACAGCTGCTAAATGATTTGATTGTTGGTTTCGCAAAAGCCGGCGAGCCCAGCCAGGCTATGCATTTTCTTGCCATGGTGCAGGCTAGTGGTTTGAGCCCCAAAACCGCTACTCTGGTGGCGGTTATTTCAGCTTTGGGGAACTCCGGTAGGGTGGTTGAGGCGGAAGCTATTTTCGAGGAAATGAAAGAGGGTGGGTTGCAACCGAGGACTAGAGCTTACAATGCACTGCTGAAAGGGTATGTGAAGGCAGCTTCTTTGGAAGATGCTGAATCCATTGTGTCACAGATGGAGAGGAGTGGCATTTCACCAGATGAGCACACTTACAGCCTCCTCATTGATGCTTATGCCAACGCCGGTAGGTGGGAGAGTGCGAGAATTGTGTTGAAGGAGATGGAGGCTAGCAATGTGCAGCCTAATTCGTATGTTTTCAGTAGGATTTTAGCTAGTTATCGGGATAGAGGGGAGTGGCAGAAGTCATTTCAAGTTTTGAGGGAGATGAGGAGCAGTGGGGTAATGCCTGATAGGCATTTTTACAATGTGATGATTGATACTTTTGGAAAGTCTAATTGTCTTGATCATGCTATGGCTACCTTTGAAAGGATGCTATCGGAGGGGATTCAGCCAGATACTGTTACCTGGAATACTCTCATTGATAGTCATTGTAAGTCAGGCCACCATGTAAGGGCAGAGGAGTTGTTTGAGGAAATGCAGGAGAGTGGTTGCGCGCCTTGTGCCACCACCTTTAACATCATGATAAACTCCTTAGGAGAGCAGGAGAGATGGGATGAAGTGAAGGGCCTAATGGGGAAGATGCAGAGTCAGGGTTTACTTCCGAATATAGTTACTTATACCACGTTAGTTGACATATATGGGAAGTCGGGGAGATTTAATGATGCAATAGAGTGCTTGGAGATAATGAAGTCTGCAGGCATGAAACCATCCCCGACAATGTATAATGCCTTGATTAATGCCTATGCTCAAAGGGGTTTGTCTGAGCAAGCACTGAATGCATTCAGGGTTATGAGAGCAGACGGCTTGAAACCTAGTCTATTAGCTCTCAATTCATTAATTAATGCATTTGGCGAAGATAGGAGGGATGCTGAGGCCTTTTCCGTGTTGCAGTACATGAAGGACAATGATGTAAAACCAGACGTGGTTACATATACTACACTTATGAAAGCCCTTATTCGCGTCGATAAATTTTATAAGGTTCCAGATGTGTATGAAGAAATGCTCCACTCTAGGGTTACTCCTGATAGGAAAGCTAGGGCAATGTTACGGTCTGCCCTGAAATACATGAAACAGACACTGAATCATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

697

Amino Acids

78.01

Weight (kDa)

6.42

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	177 - 277	2.4e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	187 - 230	1.1e-07	PPR repeat family
PPR	PF01535	187 - 215	4.4e-08	PPR repeat
PPR_long	PF17177	234 - 377	6.4e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	314 - 374	2.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	327 - 374	6.2e-13	PPR repeat family
TPR_24	PF23276	347 - 457	3.5e-11	Fungal tetratrico peptide repeats
PPR_long	PF17177	349 - 432	8.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	357 - 389	4.3e-06	PPR repeat
PPR_3	PF13812	384 - 444	2.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	430 - 469	9.2e-07	PPR repeat family
PPR_long	PF17177	436 - 590	6.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	456 - 514	3.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	462 - 494	1.1e-11	PPR repeat
PPR_2	PF13041	465 - 512	2.6e-16	PPR repeat family
PPR	PF01535	468 - 498	2.7e-10	PPR repeat
PPR_2	PF13041	500 - 545	1.9e-09	PPR repeat family
PPR_3	PF13812	525 - 584	1.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	532 - 564	1.7e-07	PPR repeat
PPR_2	PF13041	535 - 571	7.2e-08	PPR repeat family
PPR	PF01535	538 - 567	4.9e-06	PPR repeat
PPR_3	PF13812	567 - 619	3.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	573 - 617	5.1e-07	PPR repeat family
TPR_24	PF23276	575 - 667	5e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	606 - 653	9.5e-11	PPR repeat family
PPR_3	PF13812	628 - 676	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	640 - 677	2.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1977
AatII	GACGTC	2 cut(s)	172, 296
AccII	CGCG	6 cut(s)	107, 419, 491, 581, 1496, 1962
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	1970
AcyI	GRCGYC	3 cut(s)	169, 284, 293
AfaI	GTAC	2 cut(s)	332, 1895
AfiI	CCNNNNNNNGG	7 cut(s)	20, 354, 607, 1131, 1368, 1453, 2014
AgeI	ACCGGT	1 cut(s)	648
AgsI	TTSAA	6 cut(s)	47, 406, 1156, 1253, 1367, 1810
AhdI	GACNNNNNGTC	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	1924
AjnI	CCWGG	8 cut(s)	19, 195, 600, 626, 636, 672, 822, 1406
Alw21I	GWGCWC	2 cut(s)	468, 1089
Alw26I	GTCTC	1 cut(s)	63
AlwNI	CAGNNNCTG	2 cut(s)	1400, 2080
AoxI	GGCC	8 cut(s)	198, 321, 336, 345, 411, 1441, 1567, 1875
ApeKI	GCWGC	4 cut(s)	535, 775, 1019, 1180
ApoI	RAATTY	1 cut(s)	1970
AseI	ATTAAT	3 cut(s)	1737, 1838, 1842
AsiGI	ACCGGT	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	1781
AspLEI	GCGC	9 cut(s)	109, 421, 493, 581, 587, 613, 636, 1496, 1498
AspS9I	GGNCC	3 cut(s)	336, 346, 1567
AsuC2I	CCSGG	2 cut(s)	335, 344
AsuHPI	GGTGA	1 cut(s)	1068
AsuNHI	GCTAGC	1 cut(s)	1169
AxyI	CCTNAGG	1 cut(s)	1534
BanII	GRGCYC	3 cut(s)	468, 819, 869
Bbv12I	GWGCWC	2 cut(s)	468, 1089
BbvCI	CCTCAGC	1 cut(s)	1872
BbvI	GCAGC	4 cut(s)	547, 762, 1031, 1192
BccI	CCATC	7 cut(s)	46, 485, 761, 1051, 1156, 1545, 1717
BceAI	ACGGC	5 cut(s)	104, 188, 323, 610, 1819
BciT130I	CCWGG	8 cut(s)	21, 197, 602, 628, 638, 674, 824, 1408
BclI	TGATCA	1 cut(s)	1345
BcnI	CCSGG	2 cut(s)	335, 344
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	7 cut(s)	855, 981, 1170, 1215, 1815, 2013, 2037
BfmI	CTRYAG	1 cut(s)	1695
BfoI	RGCGCY	1 cut(s)	614
BglI	GCCNNNNNGGC	2 cut(s)	344, 1294
BisI	GCNGC	6 cut(s)	201, 536, 539, 776, 1020, 1181
BlsI	GCNGC	6 cut(s)	202, 537, 540, 777, 1021, 1182
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	1924
BmgT120I	GGNCC	3 cut(s)	336, 346, 1567
BmiI	GGNNCC	4 cut(s)	25, 348, 434, 1983
BmsI	GCATC	7 cut(s)	621, 1024, 1099, 1362, 1572, 1654, 1858
BmtI	GCTAGC	1 cut(s)	1173
BpmI	CTGGAG	2 cut(s)	419, 623
Bpu10I	CCTNAGC	1 cut(s)	1872
BpuMI	CCSGG	2 cut(s)	335, 344
BsaBI	GATNNNNATC	2 cut(s)	37, 68
BsaHI	GRCGYC	3 cut(s)	169, 284, 293
BsaJI	CCNNGG	2 cut(s)	843, 974
BsaWI	WCCGGW	2 cut(s)	648, 914
BsaXI	ACNNNNNCTCC	4 cut(s)	535, 565, 731, 761
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 354, 607, 1131, 1368, 1453, 2014
Bse118I	RCCGGY	3 cut(s)	648, 809, 1124
Bse21I	CCTNAGG	1 cut(s)	1534
Bse3DI	GCAATG	2 cut(s)	1180, 2049
Bse8I	GATNNNNATC	2 cut(s)	37, 68
BseBI	CCWGG	8 cut(s)	21, 197, 602, 628, 638, 674, 824, 1408
BseDI	CCNNGG	2 cut(s)	843, 974
BseJI	GATNNNNATC	2 cut(s)	37, 68
BseLI	CCNNNNNNNGG	7 cut(s)	20, 354, 607, 1131, 1368, 1453, 2014
BseMI	GCAATG	2 cut(s)	1180, 2049
BseMII	CTCAG	3 cut(s)	741, 1755, 1863
BsePI	GCGCGC	1 cut(s)	1494
BseXI	GCAGC	4 cut(s)	547, 762, 1031, 1192
BseYI	CCCAGC	1 cut(s)	818
BsgI	GTGCAG	2 cut(s)	869, 1199
Bsh1236I	CGCG	6 cut(s)	107, 419, 491, 581, 1496, 1962
Bsh1285I	CGRYCG	1 cut(s)	653
BshFI	GGCC	8 cut(s)	200, 323, 338, 347, 413, 1443, 1569, 1877
BshTI	ACCGGT	1 cut(s)	648
BsiEI	CGRYCG	1 cut(s)	653
BsiHKAI	GWGCWC	2 cut(s)	468, 1089
BsiSI	CCGG	6 cut(s)	334, 344, 649, 810, 915, 1125
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	7 cut(s)	20, 354, 607, 1131, 1368, 1453, 2014
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	2 cut(s)	1781, 1783
BsnI	GGCC	8 cut(s)	200, 323, 338, 347, 413, 1443, 1569, 1877
Bsp1286I	GDGCHC	4 cut(s)	468, 819, 869, 1089
Bsp143I	GATC	1 cut(s)	1345
Bsp19I	CCATGG	1 cut(s)	843
BspANI	GGCC	8 cut(s)	200, 323, 338, 347, 413, 1443, 1569, 1877
BspCNI	CTCAG	3 cut(s)	742, 1756, 1864
BspFNI	CGCG	6 cut(s)	107, 419, 491, 581, 1496, 1962
BspHI	TCATGA	2 cut(s)	265, 1521
BspLI	GGNNCC	4 cut(s)	25, 348, 434, 1983
BspMAI	CTGCAG	1 cut(s)	1699
BspOI	GCTAGC	1 cut(s)	1173
BsrDI	GCAATG	2 cut(s)	1180, 2049
BsrFI	RCCGGY	3 cut(s)	648, 809, 1124
BssAI	RCCGGY	3 cut(s)	648, 809, 1124
BssECI	CCNNGG	2 cut(s)	843, 974
BssHII	GCGCGC	1 cut(s)	1494
BssMI	GATC	1 cut(s)	1345
BssNI	GRCGYC	3 cut(s)	169, 284, 293
BssT1I	CCWWGG	1 cut(s)	843
Bst2UI	CCWGG	8 cut(s)	21, 197, 602, 628, 638, 674, 824, 1408
Bst4CI	ACNGT	3 cut(s)	644, 1402, 2052
BstACI	GRCGYC	3 cut(s)	169, 284, 293
BstAPI	GCANNNNNTGC	1 cut(s)	1778
BstDEI	CTNAG	4 cut(s)	750, 1534, 1764, 1872
BstDSI	CCRYGG	1 cut(s)	843
BstEII	GGTNACC	1 cut(s)	644
BstENI	CCTNNNNNAGG	2 cut(s)	605, 1366
BstFNI	CGCG	6 cut(s)	107, 419, 491, 581, 1496, 1962
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	9 cut(s)	109, 421, 493, 581, 587, 613, 636, 1496, 1498
BstKTI	GATC	1 cut(s)	1348
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	1345
BstMCI	CGRYCG	1 cut(s)	653
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 344, 439, 535, 819, 992, 1294, 1502, 1778
BstNI	CCWGG	8 cut(s)	21, 197, 602, 628, 638, 674, 824, 1408
BstPI	GGTNACC	1 cut(s)	644
BstSFI	CTRYAG	1 cut(s)	1695
BstUI	CGCG	6 cut(s)	107, 419, 491, 581, 1496, 1962
BstV1I	GCAGC	4 cut(s)	547, 762, 1031, 1192
Bsu36I	CCTNAGG	1 cut(s)	1534
BsuRI	GGCC	8 cut(s)	200, 323, 338, 347, 413, 1443, 1569, 1877
BtgI	CCRYGG	1 cut(s)	843
BtrI	CACGTC	1 cut(s)	1924
BtsI	GCAGTG	3 cut(s)	227, 995, 1282
BtsIMutI	CAGTG	5 cut(s)	227, 995, 1282, 1772, 2078
CaiI	CAGNNNCTG	2 cut(s)	1400, 2080
CciI	TCATGA	2 cut(s)	265, 1521
CfoI	GCGC	9 cut(s)	109, 421, 493, 581, 587, 613, 636, 1496, 1498
Cfr10I	RCCGGY	3 cut(s)	648, 809, 1124
Cfr13I	GGNCC	3 cut(s)	336, 346, 1567
CseI	GACGC	3 cut(s)	273, 507, 1951
Csp6I	GTAC	2 cut(s)	331, 1894
CspAI	ACCGGT	1 cut(s)	648
CspCI	CAANNNNNGTGG	2 cut(s)	1612, 1647
CviAII	CATG	8 cut(s)	266, 844, 1349, 1448, 1522, 1702, 1897, 2068
CviQI	GTAC	2 cut(s)	331, 1894
DdeI	CTNAG	4 cut(s)	750, 1534, 1764, 1872
DpnI	GATC	1 cut(s)	1347
DpnII	GATC	1 cut(s)	1345
DriI	GACNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	321
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EciI	GGCGGA	4 cut(s)	62, 106, 121, 947
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	843
Eco147I	AGGCCT	2 cut(s)	413, 1877
Eco24I	GRGCYC	3 cut(s)	468, 819, 869
Eco53kI	GAGCTC	1 cut(s)	466
Eco81I	CCTNAGG	1 cut(s)	1534
Eco91I	GGTNACC	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	466
EcoNI	CCTNNNNNAGG	2 cut(s)	605, 1366
EcoO109I	RGGNCCY	1 cut(s)	1567
EcoO65I	GGTNACC	1 cut(s)	644
EcoRII	CCWGG	8 cut(s)	19, 195, 600, 626, 636, 672, 822, 1406
EcoT14I	CCWWGG	1 cut(s)	843
EcoT22I	ATGCAT	3 cut(s)	834, 1783, 1849
EcoT38I	GRGCYC	3 cut(s)	468, 819, 869
ErhI	CCWWGG	1 cut(s)	843
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	8 cut(s)	269, 847, 1352, 1451, 1525, 1705, 1900, 2071
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	8 cut(s)	265, 843, 1348, 1447, 1521, 1701, 1896, 2067
FauI	CCCGC	2 cut(s)	218, 313
FbaI	TGATCA	1 cut(s)	1345
Fnu4HI	GCNGC	6 cut(s)	201, 536, 539, 776, 1020, 1181
FriOI	GRGCYC	3 cut(s)	468, 819, 869
Fsp4HI	GCNGC	6 cut(s)	201, 536, 539, 776, 1020, 1181
FspBI	CTAG	7 cut(s)	855, 981, 1170, 1215, 1815, 2013, 2037
GlaI	GCGC	9 cut(s)	108, 420, 492, 580, 586, 612, 635, 1495, 1497
GluI	GCNGC	6 cut(s)	201, 536, 539, 776, 1020, 1181
GsaI	CCCAGC	1 cut(s)	822
GsuI	CTGGAG	2 cut(s)	419, 623
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	8 cut(s)	200, 323, 338, 347, 413, 1443, 1569, 1877
HapII	CCGG	6 cut(s)	334, 344, 649, 810, 915, 1125
HgaI	GACGC	3 cut(s)	273, 507, 1951
HhaI	GCGC	9 cut(s)	109, 421, 493, 581, 587, 613, 636, 1496, 1498
Hin1I	GRCGYC	3 cut(s)	169, 284, 293
Hin1II	CATG	8 cut(s)	269, 847, 1352, 1451, 1525, 1705, 1900, 2071
Hin6I	GCGC	9 cut(s)	107, 419, 491, 579, 585, 611, 634, 1494, 1496
HinP1I	GCGC	9 cut(s)	107, 419, 491, 579, 585, 611, 634, 1494, 1496
HincII	GTYRAC	3 cut(s)	549, 558, 1633
HindII	GTYRAC	3 cut(s)	549, 558, 1633
HindIII	AAGCTT	1 cut(s)	728
HpaII	CCGG	6 cut(s)	334, 344, 649, 810, 915, 1125
HphI	GGTGA	1 cut(s)	1068
Hpy166II	GTNNAC	4 cut(s)	549, 558, 1598, 1633
Hpy188I	TCNGA	8 cut(s)	63, 497, 505, 655, 751, 1381, 1605, 1765
Hpy188III	TCNNGA	9 cut(s)	165, 266, 436, 661, 1223, 1343, 1522, 1985, 2024
Hpy8I	GTNNAC	4 cut(s)	549, 558, 1598, 1633
Hpy99I	CGWCG	5 cut(s)	171, 174, 289, 295, 1967
HpyAV	CCTTC	6 cut(s)	247, 601, 1009, 1150, 1558, 1894
HpyCH4III	ACNGT	3 cut(s)	644, 1402, 2052
HpyCH4IV	ACGT	5 cut(s)	169, 293, 545, 1625, 1923
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 344, 439, 535, 819, 992, 1294, 1502, 1778
HpyF3I	CTNAG	4 cut(s)	750, 1534, 1764, 1872
HpySE526I	ACGT	5 cut(s)	169, 293, 545, 1625, 1923
Hsp92I	GRCGYC	3 cut(s)	169, 284, 293
Hsp92II	CATG	8 cut(s)	269, 847, 1352, 1451, 1525, 1705, 1900, 2071
HspAI	GCGC	9 cut(s)	107, 419, 491, 579, 585, 611, 634, 1494, 1496
KroI	GCCGGC	1 cut(s)	809
KroNI	GCCGGC	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	1345
Kzo9I	GATC	1 cut(s)	1345
LmnI	GCTCC	8 cut(s)	229, 263, 386, 438, 471, 506, 1272, 2010
Lsp1109I	GCAGC	4 cut(s)	547, 762, 1031, 1192
LweI	GCATC	7 cut(s)	621, 1024, 1099, 1362, 1572, 1654, 1858
MaeI	CTAG	7 cut(s)	855, 981, 1170, 1215, 1815, 2013, 2037
MaeII	ACGT	5 cut(s)	169, 293, 545, 1625, 1923
MaeIII	GTNAC	8 cut(s)	294, 644, 1050, 1402, 1612, 1927, 2017, 2046
MalI	GATC	1 cut(s)	1347
MboI	GATC	1 cut(s)	1345
MboII	GAAGA	6 cut(s)	45, 91, 1043, 1591, 1868, 2009
MhlI	GDGCHC	4 cut(s)	468, 819, 869, 1089
MlyI	GAGTC	5 cut(s)	272, 335, 544, 755, 1597
MmeI	TCCRAC	1 cut(s)	633
Mph1103I	ATGCAT	3 cut(s)	834, 1783, 1849
MroNI	GCCGGC	1 cut(s)	809
MroXI	GAANNNNTTC	1 cut(s)	1781
MseI	TTAA	7 cut(s)	690, 725, 1515, 1659, 1737, 1838, 1842
MspA1I	CMGCKG	3 cut(s)	319, 538, 775
MspI	CCGG	6 cut(s)	334, 344, 649, 810, 915, 1125
Mva1269I	GAATGC	2 cut(s)	1781, 1783
MvaI	CCWGG	8 cut(s)	21, 197, 602, 628, 638, 674, 824, 1408
MvnI	CGCG	6 cut(s)	107, 419, 491, 581, 1496, 1962
MwoI	GCNNNNNNNGC	9 cut(s)	10, 344, 439, 535, 819, 992, 1294, 1502, 1778
NaeI	GCCGGC	1 cut(s)	811
NciI	CCSGG	2 cut(s)	335, 344
NcoI	CCATGG	1 cut(s)	843
NdeII	GATC	1 cut(s)	1345
NgoMIV	GCCGGC	1 cut(s)	809
NheI	GCTAGC	1 cut(s)	1169
NlaIII	CATG	8 cut(s)	269, 847, 1352, 1451, 1525, 1705, 1900, 2071
NlaIV	GGNNCC	4 cut(s)	25, 348, 434, 1983
NmeAIII	GCCGAG	3 cut(s)	260, 334, 349
NmuCI	GTSAC	2 cut(s)	294, 1050
NsiI	ATGCAT	3 cut(s)	834, 1783, 1849
PacI	TTAATTAA	1 cut(s)	1842
PagI	TCATGA	2 cut(s)	265, 1521
PauI	GCGCGC	1 cut(s)	1494
PceI	AGGCCT	2 cut(s)	413, 1877
PcsI	WCGNNNNNNNCGW	4 cut(s)	287, 306, 501, 551
PctI	GAATGC	2 cut(s)	1781, 1783
PdiI	GCCGGC	1 cut(s)	811
PdmI	GAANNNNTTC	1 cut(s)	1781
PfeI	GAWTC	6 cut(s)	33, 137, 710, 1040, 1387, 2083
PfoI	TCCNGGA	1 cut(s)	626
PinAI	ACCGGT	1 cut(s)	648
PkrI	GCNGC	6 cut(s)	202, 537, 540, 777, 1021, 1182
PleI	GAGTC	5 cut(s)	272, 334, 544, 754, 1596
PpsI	GAGTC	5 cut(s)	272, 334, 544, 754, 1596
PshBI	ATTAAT	3 cut(s)	1737, 1838, 1842
PsiI	TTATAA	1 cut(s)	1977
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	8 cut(s)	19, 195, 600, 626, 636, 672, 822, 1406
PspEI	GGTNACC	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	818
PspGI	CCWGG	8 cut(s)	19, 195, 600, 626, 636, 672, 822, 1406
PspN4I	GGNNCC	4 cut(s)	25, 348, 434, 1983
PspPI	GGNCC	3 cut(s)	336, 346, 1567
PstI	CTGCAG	1 cut(s)	1699
PstNI	CAGNNNCTG	2 cut(s)	1400, 2080
PteI	GCGCGC	1 cut(s)	1494
PvuII	CAGCTG	2 cut(s)	319, 775
RsaI	GTAC	2 cut(s)	332, 1895
RsaNI	GTAC	2 cut(s)	331, 1894
SacI	GAGCTC	1 cut(s)	468
SaqAI	TTAA	7 cut(s)	690, 725, 1515, 1659, 1737, 1838, 1842
SatI	GCNGC	6 cut(s)	201, 536, 539, 776, 1020, 1181
Sau3AI	GATC	1 cut(s)	1345
Sau96I	GGNCC	3 cut(s)	336, 346, 1567
SchI	GAGTC	5 cut(s)	272, 335, 544, 755, 1597
SduI	GDGCHC	4 cut(s)	468, 819, 869, 1089
SfaNI	GCATC	7 cut(s)	621, 1024, 1099, 1362, 1572, 1654, 1858
SfcI	CTRYAG	1 cut(s)	1695
SfiI	GGCCNNNNNGGCC	1 cut(s)	344
SseBI	AGGCCT	2 cut(s)	413, 1877
SspMI	CTAG	7 cut(s)	855, 981, 1170, 1215, 1815, 2013, 2037
SstI	GAGCTC	1 cut(s)	468
StuI	AGGCCT	2 cut(s)	413, 1877
StyI	CCWWGG	1 cut(s)	843
TaaI	ACNGT	3 cut(s)	644, 1402, 2052
TaiI	ACGT	5 cut(s)	172, 296, 548, 1628, 1926
TaqI	TCGA	3 cut(s)	300, 945, 1965
TatI	WGTACW	1 cut(s)	1893
TauI	GCSGC	2 cut(s)	203, 541
TfiI	GAWTC	6 cut(s)	33, 137, 710, 1040, 1387, 2083
Tru1I	TTAA	7 cut(s)	690, 725, 1515, 1659, 1737, 1838, 1842
Tru9I	TTAA	7 cut(s)	690, 725, 1515, 1659, 1737, 1838, 1842
TscAI	CASTG	5 cut(s)	234, 1002, 1282, 1779, 2085
TseFI	GTSAC	2 cut(s)	294, 1050
TseI	GCWGC	4 cut(s)	535, 775, 1019, 1180
Tsp45I	GTSAC	2 cut(s)	294, 1050
TspGWI	ACGGA	3 cut(s)	31, 543, 1873
TspRI	CASTG	5 cut(s)	234, 1002, 1282, 1779, 2085
VspI	ATTAAT	3 cut(s)	1737, 1838, 1842
XagI	CCTNNNNNAGG	2 cut(s)	605, 1366
XapI	RAATTY	1 cut(s)	1970
XmnI	GAANNNNTTC	1 cut(s)	1781
XspI	CTAG	7 cut(s)	855, 981, 1170, 1215, 1815, 2013, 2037
ZraI	GACGTC	2 cut(s)	170, 294
Zsp2I	ATGCAT	3 cut(s)	834, 1783, 1849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.