Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Reverse (-)

5876583 .. 5880235

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010997

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGCTTCTTCTGCCTCTGCCTGTTTCCACCCGATTCCCATCCGTTCAATTATCTTCGTCTCCGATACTCATCCGCCACCACCTCCACCACTACATCTTCCACGCGCCTCCCTCCGCCGTTTCCACTTCCGCCGAATCTCATCTCCCCCCAATTTCATCCTCACGACGTCGTTTGGATAACTACGACACCGACCGGGCCGCCGTTTCCCGCTGCGACTTCGCTCCACTCCTCGCCTTCCTCTCCACCTCGTCCAGCTCCACTCATGACGACATTGACTCGGCCTCGCCGACGTCACTCGACCCGACCGAGTTCCAGCTGGCCGAGTCCTACAGGGCCGTCCCGGCCCCTCTCTGGCACTCCCTCCTCAAATCCCTCTGCTCCTCCTCGTCCTCCTCCTCCTTGAAACAGGCCTACGCGCTCGTTTCGTGGCTCCAGAAGCACAACCTCTGCTTCTCTTATGAGCTCCTCTACTCCATCCTTATCCACGCGCTCGGACGCTCCGAGAAGCTTTACGAGGCGTTCCTGCTCTCTCAGCGGCAGACGCTGACTCCGTTGACCTACAACGCTCTCATCGGCGCGTGCGCTCGCAACGGCGACCTGGAGAAGGCGCTCAATTTGATGCCCAGGATGCGCCAGGACGGTTACCGATCGGATTTCGTGAATTACAGCCTGGTAATTCAGTCGCTTAATCGCTCAAACAAGGTTGATTCTCCAATTATGTTAAAGCTTTACCGGGAGATTGAATCTGAGAATGTTGAGATTGATGGACAGCTGCTAAATGATTTGATTGTTGGTTTCGCAAAAGCTGGCGAGCCCAGCCAGGCTATGCATTTTCTTGCCATGGTGCAGGCTAGTGGTTTGAGCCCCAAAACCGCCACTCTGGTGGCGGTTATTTCGGCTTTGGGGAACTCCGGTAGGGTGGTTGAGGCGGAAGCTATTTTCGAGGAAATGAAAGAGGGTGGGTTGCAACCGAGGACTAGAGCGTACAATGCACTGCTGAAAGGGTATGTGAAGGCAGCCTCTTTGGAAGATGCTGAATCTATTGTGTCACAGATGGAGAGGAGTGGCATTTCACCAGATGAGCACACTTACAGCCTCCTCATTGATGCTTATGCCAATGCCGGTAGGTGGGAGAGCGCGAGAATTGTGTTGAAGGAGATGGAGGCTAGCAATGTGCAGCCTAATTCGTATGTTTTCAGTAGGATTTTAGCTAGTTATCGGGATAGAGGGGAGTGGCAGAAGTCATTTCAAGTTTTGAGGGAGATGAGGAGCAGTGGGGTAATGCCTGATAGGCATTTTTACAATGTGATGATTGATACTTTTGGAAAATCTAATTGTCTTGATCATGCTATGGCTACCTTTGAAAGGATGCTATCGGAGGGGATTCAGCCAGATACTGTTACCTGGAATACCCTCATAGATAGTCATTGTAAGTCAGGCCACCATGTAAGGGCAGAGGAGTTGTTTGAGGAAATGCAGGAGAGTGGTTGCGCGCCTTGTGCCACCACCTTTAACATCATGATAAACTCCTTAGGGGAGCAGGAGAGATGGGATGAAGTGAAGGGCCTAATGGGGAAGATGCAGAGTCAGGGTTTACTTCCGAATATAGTTACTTATACCACGTTAGTTGACATATATGGGAAGTCGGGGAGATTTAATGATGCAATAGAGTGCTTGGAGATAATGAAGTCTGCAGGCATGAAACCATCCCCGACAATGTATAATGCCTTGATTAATGCCTATGCTCAAAGAGTAAGCTGTCTTCTCTACACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

593

Amino Acids

65.93

Weight (kDa)

5.96

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	176 - 276	8.7e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	186 - 229	8.7e-07	PPR repeat family
PPR	PF01535	186 - 214	3.5e-07	PPR repeat
PPR_long	PF17177	233 - 376	4.9e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	313 - 373	2.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	326 - 373	5.1e-13	PPR repeat family
PPR_long	PF17177	345 - 431	2.6e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	346 - 456	2.7e-11	Fungal tetratrico peptide repeats
PPR_1	PF12854	356 - 388	3.5e-06	PPR repeat
PPR_2	PF13041	364 - 401	4.1e-06	PPR repeat family
PPR_3	PF13812	383 - 443	2.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	434 - 468	1.4e-06	PPR repeat family
PPR_long	PF17177	435 - 582	5.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	455 - 513	3.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	461 - 493	9e-12	PPR repeat
PPR_2	PF13041	464 - 511	2.1e-16	PPR repeat family
PPR	PF01535	467 - 497	2.2e-10	PPR repeat
PPR_2	PF13041	499 - 544	7.9e-10	PPR repeat family
PPR_3	PF13812	524 - 583	1.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	531 - 563	1.4e-07	PPR repeat
PPR_2	PF13041	534 - 582	6.1e-11	PPR repeat family
PPR	PF01535	537 - 566	4.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	169, 293
AccII	CGCG	6 cut(s)	104, 416, 488, 578, 1139, 1493
AciI	CCGC	9 cut(s)	73, 114, 129, 198, 208, 535, 873, 887, 929
AcoI	YGGCCR	1 cut(s)	318
AcyI	GRCGYC	2 cut(s)	166, 290
AfaI	GTAC	1 cut(s)	986
AfiI	CCNNNNNNNGG	5 cut(s)	351, 604, 1128, 1365, 1450
AgsI	TTSAA	6 cut(s)	47, 403, 743, 1153, 1250, 1364
AjnI	CCWGG	6 cut(s)	597, 623, 633, 669, 819, 1403
AleI	CACNNNNGTG	1 cut(s)	881
Alw21I	GWGCWC	2 cut(s)	465, 1086
Alw26I	GTCTC	1 cut(s)	63
AlwNI	CAGNNNCTG	2 cut(s)	544, 1397
AoxI	GGCC	8 cut(s)	195, 279, 318, 333, 342, 408, 1438, 1564
ApeKI	GCWGC	4 cut(s)	210, 772, 1016, 1177
AseI	ATTAAT	1 cut(s)	1734
AspS9I	GGNCC	4 cut(s)	195, 333, 343, 1564
AsuC2I	CCSGG	3 cut(s)	194, 341, 734
AsuHPI	GGTGA	1 cut(s)	1065
AsuNHI	GCTAGC	1 cut(s)	1166
AxyI	CCTNAGG	1 cut(s)	1531
BanII	GRGCYC	3 cut(s)	465, 816, 866
BarI	GAAGNNNNNNTAC	2 cut(s)	1746, 1778
BbsI	GAAGAC	1 cut(s)	1754
Bbv12I	GWGCWC	2 cut(s)	465, 1086
BbvI	GCAGC	4 cut(s)	197, 759, 1028, 1189
BccI	CCATC	7 cut(s)	46, 482, 758, 1048, 1153, 1542, 1714
BceAI	ACGGC	4 cut(s)	101, 185, 320, 607
BciT130I	CCWGG	6 cut(s)	599, 625, 635, 671, 821, 1405
BclI	TGATCA	1 cut(s)	1342
BcnI	CCSGG	3 cut(s)	194, 341, 734
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	4 cut(s)	852, 978, 1167, 1212
BfmI	CTRYAG	2 cut(s)	328, 1692
BfoI	RGCGCY	1 cut(s)	611
BglI	GCCNNNNNGGC	2 cut(s)	341, 1291
BisI	GCNGC	6 cut(s)	198, 211, 536, 773, 1017, 1178
BlsI	GCNGC	6 cut(s)	199, 212, 537, 774, 1018, 1179
Bme1390I	CCNGG	9 cut(s)	194, 341, 599, 625, 635, 671, 734, 821, 1405
BmgT120I	GGNCC	4 cut(s)	195, 333, 343, 1564
BmiI	GGNNCC	2 cut(s)	345, 431
BmrFI	CCNGG	9 cut(s)	194, 341, 599, 625, 635, 671, 734, 821, 1405
BmsI	GCATC	7 cut(s)	609, 618, 1021, 1096, 1359, 1569, 1651
BmtI	GCTAGC	1 cut(s)	1170
BpiI	GAAGAC	1 cut(s)	1754
BpmI	CTGGAG	2 cut(s)	416, 620
BpuMI	CCSGG	3 cut(s)	194, 341, 734
BsaBI	GATNNNNATC	2 cut(s)	37, 68
BsaHI	GRCGYC	2 cut(s)	166, 290
BsaJI	CCNNGG	3 cut(s)	623, 840, 971
BsaWI	WCCGGW	1 cut(s)	911
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	5 cut(s)	351, 604, 1128, 1365, 1450
Bse118I	RCCGGY	1 cut(s)	1121
Bse21I	CCTNAGG	1 cut(s)	1531
Bse3DI	GCAATG	1 cut(s)	1177
Bse8I	GATNNNNATC	2 cut(s)	37, 68
BseBI	CCWGG	6 cut(s)	599, 625, 635, 671, 821, 1405
BseDI	CCNNGG	3 cut(s)	623, 840, 971
BseGI	GGATG	8 cut(s)	38, 69, 155, 474, 633, 1374, 1558, 1706
BseJI	GATNNNNATC	2 cut(s)	37, 68
BseLI	CCNNNNNNNGG	5 cut(s)	351, 604, 1128, 1365, 1450
BseMI	GCAATG	1 cut(s)	1177
BseMII	CTCAG	2 cut(s)	545, 738
BsePI	GCGCGC	1 cut(s)	1491
BseXI	GCAGC	4 cut(s)	197, 759, 1028, 1189
BseYI	CCCAGC	1 cut(s)	815
BsgI	GTGCAG	2 cut(s)	866, 1196
Bsh1236I	CGCG	6 cut(s)	104, 416, 488, 578, 1139, 1493
Bsh1285I	CGRYCG	3 cut(s)	193, 306, 650
BshFI	GGCC	8 cut(s)	197, 281, 320, 335, 344, 410, 1440, 1566
BsiEI	CGRYCG	3 cut(s)	193, 306, 650
BsiHKAI	GWGCWC	2 cut(s)	465, 1086
BsiSI	CCGG	5 cut(s)	193, 341, 733, 912, 1122
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	5 cut(s)	351, 604, 1128, 1365, 1450
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	8 cut(s)	197, 281, 320, 335, 344, 410, 1440, 1566
Bsp1286I	GDGCHC	4 cut(s)	465, 816, 866, 1086
Bsp143I	GATC	2 cut(s)	647, 1342
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	9 cut(s)	73, 114, 129, 198, 208, 535, 873, 887, 929
BspANI	GGCC	8 cut(s)	197, 281, 320, 335, 344, 410, 1440, 1566
BspCNI	CTCAG	2 cut(s)	544, 739
BspFNI	CGCG	6 cut(s)	104, 416, 488, 578, 1139, 1493
BspHI	TCATGA	2 cut(s)	262, 1518
BspLI	GGNNCC	2 cut(s)	345, 431
BspMAI	CTGCAG	1 cut(s)	1696
BspOI	GCTAGC	1 cut(s)	1170
BsrDI	GCAATG	1 cut(s)	1177
BsrFI	RCCGGY	1 cut(s)	1121
BssAI	RCCGGY	1 cut(s)	1121
BssECI	CCNNGG	3 cut(s)	623, 840, 971
BssHII	GCGCGC	1 cut(s)	1491
BssMI	GATC	2 cut(s)	647, 1342
BssNI	GRCGYC	2 cut(s)	166, 290
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	6 cut(s)	599, 625, 635, 671, 821, 1405
Bst4CI	ACNGT	2 cut(s)	641, 1399
BstACI	GRCGYC	2 cut(s)	166, 290
BstC8I	GCNNGC	9 cut(s)	318, 580, 586, 808, 812, 849, 1168, 1493, 1696
BstDEI	CTNAG	3 cut(s)	531, 747, 1531
BstDSI	CCRYGG	1 cut(s)	840
BstEII	GGTNACC	1 cut(s)	641
BstENI	CCTNNNNNAGG	2 cut(s)	602, 1363
BstF5I	GGATG	8 cut(s)	38, 69, 155, 474, 633, 1374, 1558, 1706
BstFNI	CGCG	6 cut(s)	104, 416, 488, 578, 1139, 1493
BstH2I	RGCGCY	1 cut(s)	611
BstKTI	GATC	2 cut(s)	650, 1345
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	647, 1342
BstMCI	CGRYCG	3 cut(s)	193, 306, 650
BstNI	CCWGG	6 cut(s)	599, 625, 635, 671, 821, 1405
BstPI	GGTNACC	1 cut(s)	641
BstSCI	CCNGG	9 cut(s)	192, 339, 597, 623, 633, 669, 732, 819, 1403
BstSFI	CTRYAG	2 cut(s)	328, 1692
BstUI	CGCG	6 cut(s)	104, 416, 488, 578, 1139, 1493
BstV1I	GCAGC	4 cut(s)	197, 759, 1028, 1189
BstV2I	GAAGAC	1 cut(s)	1754
BstXI	CCANNNNNNTGG	1 cut(s)	883
Bsu36I	CCTNAGG	1 cut(s)	1531
BsuRI	GGCC	8 cut(s)	197, 281, 320, 335, 344, 410, 1440, 1566
BtgI	CCRYGG	1 cut(s)	840
BtsCI	GGATG	8 cut(s)	38, 69, 155, 474, 633, 1374, 1558, 1706
BtsI	GCAGTG	2 cut(s)	992, 1279
BtsIMutI	CAGTG	2 cut(s)	992, 1279
Cac8I	GCNNGC	9 cut(s)	318, 580, 586, 808, 812, 849, 1168, 1493, 1696
CaiI	CAGNNNCTG	2 cut(s)	544, 1397
CciI	TCATGA	2 cut(s)	262, 1518
Cfr10I	RCCGGY	1 cut(s)	1121
Cfr13I	GGNCC	4 cut(s)	195, 333, 343, 1564
CseI	GACGC	2 cut(s)	504, 550
Csp6I	GTAC	1 cut(s)	985
CspCI	CAANNNNNGTGG	2 cut(s)	1609, 1644
CviAII	CATG	6 cut(s)	263, 841, 1346, 1445, 1519, 1699
CviQI	GTAC	1 cut(s)	985
DdeI	CTNAG	3 cut(s)	531, 747, 1531
DpnI	GATC	2 cut(s)	649, 1344
DpnII	GATC	2 cut(s)	647, 1342
EaeI	YGGCCR	1 cut(s)	318
EciI	GGCGGA	4 cut(s)	62, 103, 118, 944
Ecl136II	GAGCTC	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	840
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	3 cut(s)	465, 816, 866
Eco53kI	GAGCTC	1 cut(s)	463
Eco81I	CCTNAGG	1 cut(s)	1531
Eco91I	GGTNACC	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	463
EcoNI	CCTNNNNNAGG	2 cut(s)	602, 1363
EcoO109I	RGGNCCY	1 cut(s)	1564
EcoO65I	GGTNACC	1 cut(s)	641
EcoRII	CCWGG	6 cut(s)	597, 623, 633, 669, 819, 1403
EcoT14I	CCWWGG	1 cut(s)	840
EcoT22I	ATGCAT	1 cut(s)	831
EcoT38I	GRGCYC	3 cut(s)	465, 816, 866
ErhI	CCWWGG	1 cut(s)	840
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	6 cut(s)	266, 844, 1349, 1448, 1522, 1702
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	6 cut(s)	262, 840, 1345, 1444, 1518, 1698
FauI	CCCGC	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	1342
Fnu4HI	GCNGC	6 cut(s)	198, 211, 536, 773, 1017, 1178
FokI	GGATG	8 cut(s)	25, 56, 142, 461, 640, 1381, 1565, 1693
FriOI	GRGCYC	3 cut(s)	465, 816, 866
Fsp4HI	GCNGC	6 cut(s)	198, 211, 536, 773, 1017, 1178
FspBI	CTAG	4 cut(s)	852, 978, 1167, 1212
GluI	GCNGC	6 cut(s)	198, 211, 536, 773, 1017, 1178
GsaI	CCCAGC	1 cut(s)	819
GsuI	CTGGAG	2 cut(s)	416, 620
HaeII	RGCGCY	1 cut(s)	611
HaeIII	GGCC	8 cut(s)	197, 281, 320, 335, 344, 410, 1440, 1566
HapII	CCGG	5 cut(s)	193, 341, 733, 912, 1122
HgaI	GACGC	2 cut(s)	504, 550
Hin1I	GRCGYC	2 cut(s)	166, 290
Hin1II	CATG	6 cut(s)	266, 844, 1349, 1448, 1522, 1702
HincII	GTYRAC	2 cut(s)	555, 1630
HindII	GTYRAC	2 cut(s)	555, 1630
HindIII	AAGCTT	2 cut(s)	506, 725
HpaII	CCGG	5 cut(s)	193, 341, 733, 912, 1122
HphI	GGTGA	1 cut(s)	1065
Hpy166II	GTNNAC	3 cut(s)	555, 1595, 1630
Hpy188I	TCNGA	7 cut(s)	63, 494, 502, 652, 748, 1378, 1602
Hpy188III	TCNNGA	8 cut(s)	162, 263, 433, 658, 1220, 1340, 1519, 1776
Hpy8I	GTNNAC	3 cut(s)	555, 1595, 1630
Hpy99I	CGWCG	3 cut(s)	168, 171, 292
HpyAV	CCTTC	5 cut(s)	244, 598, 1006, 1147, 1555
HpyCH4III	ACNGT	2 cut(s)	641, 1399
HpyCH4IV	ACGT	3 cut(s)	166, 290, 1622
HpyCH4V	TGCA	9 cut(s)	829, 847, 967, 992, 1177, 1477, 1582, 1664, 1694
HpyF3I	CTNAG	3 cut(s)	531, 747, 1531
HpySE526I	ACGT	3 cut(s)	166, 290, 1622
Hsp92I	GRCGYC	2 cut(s)	166, 290
Hsp92II	CATG	6 cut(s)	266, 844, 1349, 1448, 1522, 1702
Ksp22I	TGATCA	1 cut(s)	1342
Kzo9I	GATC	2 cut(s)	647, 1342
LmnI	GCTCC	8 cut(s)	226, 260, 383, 435, 468, 503, 1269, 1537
Lsp1109I	GCAGC	4 cut(s)	197, 759, 1028, 1189
LweI	GCATC	7 cut(s)	609, 618, 1021, 1096, 1359, 1569, 1651
MaeI	CTAG	4 cut(s)	852, 978, 1167, 1212
MaeII	ACGT	3 cut(s)	166, 290, 1622
MaeIII	GTNAC	5 cut(s)	291, 641, 1047, 1399, 1609
MalI	GATC	2 cut(s)	649, 1344
MboI	GATC	2 cut(s)	647, 1342
MboII	GAAGA	5 cut(s)	45, 88, 1040, 1588, 1754
MhlI	GDGCHC	4 cut(s)	465, 816, 866, 1086
MluCI	AATT	9 cut(s)	47, 150, 613, 661, 675, 714, 1143, 1183, 1333
MlyI	GAGTC	4 cut(s)	269, 332, 541, 1594
Mph1103I	ATGCAT	1 cut(s)	831
MseI	TTAA	5 cut(s)	687, 722, 1512, 1656, 1734
MslI	CAYNNNNRTG	1 cut(s)	881
MspA1I	CMGCKG	4 cut(s)	210, 316, 535, 772
MspI	CCGG	5 cut(s)	193, 341, 733, 912, 1122
MspR9I	CCNGG	9 cut(s)	194, 341, 599, 625, 635, 671, 734, 821, 1405
MvaI	CCWGG	6 cut(s)	599, 625, 635, 671, 821, 1405
MvnI	CGCG	6 cut(s)	104, 416, 488, 578, 1139, 1493
NciI	CCSGG	3 cut(s)	194, 341, 734
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	2 cut(s)	647, 1342
NheI	GCTAGC	1 cut(s)	1166
NlaIII	CATG	6 cut(s)	266, 844, 1349, 1448, 1522, 1702
NlaIV	GGNNCC	2 cut(s)	345, 431
NmeAIII	GCCGAG	2 cut(s)	257, 346
NmuCI	GTSAC	2 cut(s)	291, 1047
NsiI	ATGCAT	1 cut(s)	831
OliI	CACNNNNGTG	1 cut(s)	881
PagI	TCATGA	2 cut(s)	262, 1518
PauI	GCGCGC	1 cut(s)	1491
PceI	AGGCCT	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	4 cut(s)	284, 303, 498, 548
PfeI	GAWTC	6 cut(s)	33, 134, 707, 743, 1037, 1384
PkrI	GCNGC	6 cut(s)	199, 212, 537, 774, 1018, 1179
Ple19I	CGATCG	1 cut(s)	650
PleI	GAGTC	4 cut(s)	269, 331, 541, 1593
PpsI	GAGTC	4 cut(s)	269, 331, 541, 1593
PshBI	ATTAAT	1 cut(s)	1734
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	6 cut(s)	597, 623, 633, 669, 819, 1403
PspEI	GGTNACC	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	6 cut(s)	597, 623, 633, 669, 819, 1403
PspN4I	GGNNCC	2 cut(s)	345, 431
PspPI	GGNCC	4 cut(s)	195, 333, 343, 1564
PstI	CTGCAG	1 cut(s)	1696
PstNI	CAGNNNCTG	2 cut(s)	544, 1397
PteI	GCGCGC	1 cut(s)	1491
PvuI	CGATCG	1 cut(s)	650
PvuII	CAGCTG	2 cut(s)	316, 772
RsaI	GTAC	1 cut(s)	986
RsaNI	GTAC	1 cut(s)	985
RseI	CAYNNNNRTG	1 cut(s)	881
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	5 cut(s)	687, 722, 1512, 1656, 1734
SatI	GCNGC	6 cut(s)	198, 211, 536, 773, 1017, 1178
Sau3AI	GATC	2 cut(s)	647, 1342
Sau96I	GGNCC	4 cut(s)	195, 333, 343, 1564
SchI	GAGTC	4 cut(s)	269, 332, 541, 1594
ScrFI	CCNGG	9 cut(s)	194, 341, 599, 625, 635, 671, 734, 821, 1405
SduI	GDGCHC	4 cut(s)	465, 816, 866, 1086
SfaNI	GCATC	7 cut(s)	609, 618, 1021, 1096, 1359, 1569, 1651
SfcI	CTRYAG	2 cut(s)	328, 1692
SfiI	GGCCNNNNNGGCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	881
Sse9I	AATT	9 cut(s)	47, 150, 613, 661, 675, 714, 1143, 1183, 1333
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	9 cut(s)	73, 114, 129, 198, 208, 535, 873, 887, 929
SspMI	CTAG	4 cut(s)	852, 978, 1167, 1212
SstI	GAGCTC	1 cut(s)	465
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	9 cut(s)	192, 339, 597, 623, 633, 669, 732, 819, 1403
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	641, 1399
TaiI	ACGT	3 cut(s)	169, 293, 1625
TaqI	TCGA	2 cut(s)	297, 942
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	9 cut(s)	47, 150, 613, 661, 675, 714, 1143, 1183, 1333
TauI	GCSGC	2 cut(s)	200, 538
TfiI	GAWTC	6 cut(s)	33, 134, 707, 743, 1037, 1384
Tru1I	TTAA	5 cut(s)	687, 722, 1512, 1656, 1734
Tru9I	TTAA	5 cut(s)	687, 722, 1512, 1656, 1734
TscAI	CASTG	2 cut(s)	999, 1279
TseFI	GTSAC	2 cut(s)	291, 1047
TseI	GCWGC	4 cut(s)	210, 772, 1016, 1177
Tsp45I	GTSAC	2 cut(s)	291, 1047
TspDTI	ATGAA	5 cut(s)	144, 965, 1569, 1700, 1715
TspGWI	ACGGA	2 cut(s)	31, 540
TspRI	CASTG	2 cut(s)	999, 1279
VspI	ATTAAT	1 cut(s)	1734
XagI	CCTNNNNNAGG	2 cut(s)	602, 1363
XspI	CTAG	4 cut(s)	852, 978, 1167, 1212
ZraI	GACGTC	2 cut(s)	167, 291
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.