Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Reverse (-)

6033627 .. 6037074

Gene Structure 3448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGCTTCTTCTGCCTCTGCCTGGTTCCACCACCCGCTTCCCTTCAGTTCAATTAGCTTCGTCTCCTATACTCATCCGCCACCACCACCACATCTTCCACGCGCCTCCCTCCGCCCTTTCCACTTCCGCCGAATCTCATCTCCCCCCAATTTCATCCTCACGACGTCGTTTGGATAACTACGACACCGACCAGGCCGCCGTTTCCCGCTACGACTTCGCTCCACTCCTCGCCTTCCTCTCCACCTCGTCCAGCTCCACTCATGACGACATTGACTCGGCGTCGCCGACGTCACTCGACCCGGCCGAGTTCCAGCTGGCCGAGTCGTACCGGGCCGTCCCGGCCCCTCTCTGGCACTCCCTCCTCAAATCCCTCTGCTCCTCCTCCTCCTCCTCCACGTCCTCCTCCTTGAAGCAGGCCTACGCGCTCGTTTCGTGGCTCCAGAAGCACAACCTCTGCTTCTCGTATGAGCTCCTCTACTCTATCCTCATCCACGCGCTCGGACGCTCCGAGAAGCTCTACGAGGCGTTCCTGCTCTCTCAGCGGCAGACGTTGACTCCGTTGACCTACAACGCTCTCATCGGCGCGTGCGCTCGCAACGGCGACCTGGAGAAGGCGCTCAATTTGATGTCCAGGATGCGCCAGGACGGTTACCGATCGGATTTCGTGAATTACAGCCTAGTAATTCAGTCGCTTAATCGCTCAAACAAGGTTGATTCTCCAATTATGTTAAAGCTTTACAGGGAGATTGAGTCTGAGAATGTTGAGATTGATGGACAGCTGCTAAATGATTTGATTGTTGGTTTCGCAAAAGCCGGCGAGCCCAGCCAGGCTATGCATTTTCTTGCCATGGTGCAGGCTAGTGGTTTGAGCCCCAAAACCGCCACTCTGGTGGCGGTTATTTCGGCTTTGGGGAACTCCGGTAGGGTGGTTGAGGCGGAAGCTATTTTCGAGGAAATGAAAGAGGGTGGGTTGCAACCGAGGACTAGAGCTTACAATGCACTGCTTAAGGGGTATGTGAAGGCAGCTTCTTTGGAAGATGCTGAATCCATTGTGTCACAGATGGAGAGGAGTGGCATTTCACCGGATGAGCACACTTACAGCCTCCTCATTGATGCTTATGCCAATGCCGGTAGGTGGGAGAGCGCGAGAATTGTGTTGAAGGAGATGGAGGCTAGCAATGTGCAGCCTAATTCGTATGTTTTCAGTAGGATTTTAGCTAGTTATCGGGATAAAGGGGAGTGGCAGAAGTCATTTCAAGTTTTGAGGGAGATGAGGAGCAGTGGGGTAATGCCTGATAGGCATTTTTACAACGTGATGATTGATACTTTTGGAAAGTCTAATTGTCTTGATCATGCTATGGCTACCTTTGAAAGGATGCTATCGGAGGGGATTCAGCCAGATACGGTTACCTGGAATACCCTCATAGATAGTCATTGTAAGTCAGGCCACCATGTAAGGGCAGAGGAGTTGTTTGAGGAAATGCAGGAGAGTGGTTGTGCGCCTTGTGCCACCACCTTTAACATCATGATAAACTCCTTAGGGGAGCAGGAGAGATGGGATGAAGTGAAGGGCCTAATGGGGAAAATGCAGAGTCAAGGTTTGCTTCCGAATATAGTTACTTATACCACGTTAGTTGACATATATGGGAAGTCGGGGAGATTTAATGATGCAATAGAGTGCTTGGAGATAATGAAGTCTGCAGGCATGAAACCATCCCCGACAATGTATAATGCCTTGATTAATGCCTATGCTCAAAGGGGTTTGTCTGAGCAAGCACTGAATGCATTCAGGGTTATGAGAGCAGACGGCTTGAAACCTAGTCTATTAGCTCTCAATTCATTAATTAATGCATTTGGCGAAGATAGGAGGGATGCTGAGGCCTTTTCTGTGTTGCAGTACATGAAGGACAATGATGTAAAACCAGACGTGGTTACATATACTACACTTATGAAAGCCCTTATTCGCGTCGATAAATTTTATAAGGTTCCAGATGTGTATGAAGAAATGATCCACTCTAGGGTTACTCCTGATAGGAAAGCTAGGGCAATGTTACGGTCTGCCCTGAAATACATGAAACAGACACTGAATCATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

698

Amino Acids

77.97

Weight (kDa)

6.37

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	188 - 231	1.1e-07	PPR repeat family
PPR	PF01535	188 - 216	4.4e-08	PPR repeat
PPR_long	PF17177	235 - 378	6.4e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	315 - 375	2.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	328 - 375	6.2e-13	PPR repeat family
TPR_24	PF23276	348 - 458	2.5e-11	Fungal tetratrico peptide repeats
PPR_long	PF17177	350 - 432	5.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	358 - 390	4.3e-06	PPR repeat
PPR_3	PF13812	385 - 445	1.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	431 - 470	9.2e-07	PPR repeat family
PPR_long	PF17177	437 - 591	8.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	457 - 515	3.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	463 - 495	1.1e-11	PPR repeat
PPR_2	PF13041	466 - 513	2.6e-16	PPR repeat family
PPR	PF01535	469 - 499	2.7e-10	PPR repeat
PPR_2	PF13041	501 - 546	1.9e-09	PPR repeat family
PPR_3	PF13812	526 - 585	1.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	533 - 565	1.7e-07	PPR repeat
PPR_2	PF13041	536 - 572	7.2e-08	PPR repeat family
PPR	PF01535	539 - 568	4.9e-06	PPR repeat
PPR_3	PF13812	568 - 620	3.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	574 - 618	3e-07	PPR repeat family
TPR_24	PF23276	576 - 668	5e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	607 - 654	9.5e-11	PPR repeat family
PPR_2	PF13041	641 - 678	3.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1980
AatII	GACGTC	2 cut(s)	166, 290
AccII	CGCG	6 cut(s)	101, 422, 494, 584, 1145, 1965
AclWI	GGATC	1 cut(s)	2002
AcoI	YGGCCR	2 cut(s)	300, 315
AcsI	RAATTY	1 cut(s)	1973
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	3 cut(s)	163, 278, 287
AfaI	GTAC	2 cut(s)	326, 1898
AfiI	CCNNNNNNNGG	7 cut(s)	20, 348, 610, 1134, 1371, 1456, 2017
AflII	CTTAAG	1 cut(s)	1004
AgsI	TTSAA	6 cut(s)	50, 409, 1159, 1256, 1370, 1813
AhdI	GACNNNNNGTC	1 cut(s)	277
AjiI	CACGTC	2 cut(s)	396, 1927
AjnI	CCWGG	7 cut(s)	19, 189, 603, 629, 639, 825, 1409
AleI	CACNNNNGTG	1 cut(s)	887
Alw21I	GWGCWC	2 cut(s)	471, 1092
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	2002
AlwNI	CAGNNNCTG	1 cut(s)	2083
AoxI	GGCC	9 cut(s)	192, 300, 315, 330, 339, 414, 1444, 1570, 1878
ApeKI	GCWGC	3 cut(s)	778, 1022, 1183
ApoI	RAATTY	1 cut(s)	1973
AseI	ATTAAT	3 cut(s)	1740, 1841, 1845
Asp700I	GAANNNNTTC	1 cut(s)	1784
AspLEI	GCGC	9 cut(s)	103, 424, 496, 584, 590, 616, 639, 1145, 1501
AspS9I	GGNCC	3 cut(s)	330, 340, 1570
AsuC2I	CCSGG	3 cut(s)	299, 329, 338
AsuHPI	GGTGA	1 cut(s)	1071
AsuNHI	GCTAGC	1 cut(s)	1172
AxyI	CCTNAGG	1 cut(s)	1537
BanII	GRGCYC	3 cut(s)	471, 822, 872
BarI	GAAGNNNNNNTAC	2 cut(s)	401, 433
Bbv12I	GWGCWC	2 cut(s)	471, 1092
BbvCI	CCTCAGC	1 cut(s)	1875
BbvI	GCAGC	3 cut(s)	765, 1034, 1195
BccI	CCATC	5 cut(s)	764, 1054, 1159, 1548, 1720
BceAI	ACGGC	4 cut(s)	182, 317, 613, 1822
BciT130I	CCWGG	7 cut(s)	21, 191, 605, 631, 641, 827, 1411
BclI	TGATCA	1 cut(s)	1348
BcnI	CCSGG	3 cut(s)	299, 329, 338
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	8 cut(s)	677, 858, 984, 1173, 1218, 1818, 2016, 2040
BfmI	CTRYAG	1 cut(s)	1698
BfoI	RGCGCY	1 cut(s)	617
BfrI	CTTAAG	1 cut(s)	1004
BglI	GCCNNNNNGGC	2 cut(s)	338, 1297
BisI	GCNGC	5 cut(s)	195, 542, 779, 1023, 1184
BlsI	GCNGC	5 cut(s)	196, 543, 780, 1024, 1185
BmeRI	GACNNNNNGTC	1 cut(s)	277
BmgBI	CACGTC	2 cut(s)	396, 1927
BmgT120I	GGNCC	3 cut(s)	330, 340, 1570
BmiI	GGNNCC	4 cut(s)	25, 342, 437, 1986
BmsI	GCATC	6 cut(s)	624, 1027, 1102, 1365, 1657, 1861
BmtI	GCTAGC	1 cut(s)	1176
BpmI	CTGGAG	2 cut(s)	422, 626
Bpu10I	CCTNAGC	1 cut(s)	1875
BpuMI	CCSGG	3 cut(s)	299, 329, 338
BsaHI	GRCGYC	3 cut(s)	163, 278, 287
BsaJI	CCNNGG	2 cut(s)	846, 977
BsaWI	WCCGGW	2 cut(s)	917, 1081
BsaXI	ACNNNNNCTCC	4 cut(s)	538, 568, 734, 764
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 348, 610, 1134, 1371, 1456, 2017
Bse118I	RCCGGY	2 cut(s)	812, 1127
Bse21I	CCTNAGG	1 cut(s)	1537
Bse3DI	GCAATG	2 cut(s)	1183, 2052
BseBI	CCWGG	7 cut(s)	21, 191, 605, 631, 641, 827, 1411
BseDI	CCNNGG	2 cut(s)	846, 977
BseGI	GGATG	9 cut(s)	72, 152, 486, 639, 1090, 1380, 1564, 1712, 1876
BseLI	CCNNNNNNNGG	7 cut(s)	20, 348, 610, 1134, 1371, 1456, 2017
BseMI	GCAATG	2 cut(s)	1183, 2052
BseMII	CTCAG	4 cut(s)	551, 744, 1758, 1866
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	765, 1034, 1195
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	2 cut(s)	872, 1202
Bsh1236I	CGCG	6 cut(s)	101, 422, 494, 584, 1145, 1965
Bsh1285I	CGRYCG	2 cut(s)	303, 656
BshFI	GGCC	9 cut(s)	194, 302, 317, 332, 341, 416, 1446, 1572, 1880
BsiEI	CGRYCG	2 cut(s)	303, 656
BsiHKAI	GWGCWC	2 cut(s)	471, 1092
BsiSI	CCGG	7 cut(s)	299, 328, 338, 813, 918, 1082, 1128
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	7 cut(s)	20, 348, 610, 1134, 1371, 1456, 2017
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	2 cut(s)	1784, 1786
BsnI	GGCC	9 cut(s)	194, 302, 317, 332, 341, 416, 1446, 1572, 1880
Bsp1286I	GDGCHC	4 cut(s)	471, 822, 872, 1092
Bsp143I	GATC	3 cut(s)	653, 1348, 2007
Bsp19I	CCATGG	1 cut(s)	846
BspANI	GGCC	9 cut(s)	194, 302, 317, 332, 341, 416, 1446, 1572, 1880
BspCNI	CTCAG	4 cut(s)	550, 745, 1759, 1867
BspFNI	CGCG	6 cut(s)	101, 422, 494, 584, 1145, 1965
BspHI	TCATGA	2 cut(s)	259, 1524
BspLI	GGNNCC	4 cut(s)	25, 342, 437, 1986
BspMAI	CTGCAG	1 cut(s)	1702
BspOI	GCTAGC	1 cut(s)	1176
BspPI	GGATC	1 cut(s)	2002
BspTI	CTTAAG	1 cut(s)	1004
BsrDI	GCAATG	2 cut(s)	1183, 2052
BsrFI	RCCGGY	2 cut(s)	812, 1127
BssAI	RCCGGY	2 cut(s)	812, 1127
BssECI	CCNNGG	2 cut(s)	846, 977
BssMI	GATC	3 cut(s)	653, 1348, 2007
BssNI	GRCGYC	3 cut(s)	163, 278, 287
BssT1I	CCWWGG	1 cut(s)	846
Bst2UI	CCWGG	7 cut(s)	21, 191, 605, 631, 641, 827, 1411
Bst4CI	ACNGT	3 cut(s)	647, 1405, 2055
BstACI	GRCGYC	3 cut(s)	163, 278, 287
BstAFI	CTTAAG	1 cut(s)	1004
BstAPI	GCANNNNNTGC	1 cut(s)	1781
BstDEI	CTNAG	5 cut(s)	537, 753, 1537, 1767, 1875
BstDSI	CCRYGG	1 cut(s)	846
BstEII	GGTNACC	2 cut(s)	647, 1405
BstENI	CCTNNNNNAGG	2 cut(s)	608, 1369
BstF5I	GGATG	9 cut(s)	72, 152, 486, 639, 1090, 1380, 1564, 1712, 1876
BstFNI	CGCG	6 cut(s)	101, 422, 494, 584, 1145, 1965
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	9 cut(s)	103, 424, 496, 584, 590, 616, 639, 1145, 1501
BstKTI	GATC	3 cut(s)	656, 1351, 2010
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	653, 1348, 2007
BstMCI	CGRYCG	2 cut(s)	303, 656
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 338, 442, 538, 822, 995, 1297, 1505, 1781
BstNI	CCWGG	7 cut(s)	21, 191, 605, 631, 641, 827, 1411
BstPI	GGTNACC	2 cut(s)	647, 1405
BstSFI	CTRYAG	1 cut(s)	1698
BstUI	CGCG	6 cut(s)	101, 422, 494, 584, 1145, 1965
BstV1I	GCAGC	3 cut(s)	765, 1034, 1195
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstZI	CGGCCG	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	1537
BsuRI	GGCC	9 cut(s)	194, 302, 317, 332, 341, 416, 1446, 1572, 1880
BtgI	CCRYGG	1 cut(s)	846
BtrI	CACGTC	2 cut(s)	396, 1927
BtsCI	GGATG	9 cut(s)	72, 152, 486, 639, 1090, 1380, 1564, 1712, 1876
BtsI	GCAGTG	2 cut(s)	998, 1285
BtsIMutI	CAGTG	4 cut(s)	998, 1285, 1775, 2081
CaiI	CAGNNNCTG	1 cut(s)	2083
CciI	TCATGA	2 cut(s)	259, 1524
CfoI	GCGC	9 cut(s)	103, 424, 496, 584, 590, 616, 639, 1145, 1501
Cfr10I	RCCGGY	2 cut(s)	812, 1127
Cfr13I	GGNCC	3 cut(s)	330, 340, 1570
CseI	GACGC	3 cut(s)	267, 510, 1954
Csp6I	GTAC	2 cut(s)	325, 1897
CspCI	CAANNNNNGTGG	2 cut(s)	1615, 1650
CviAII	CATG	8 cut(s)	260, 847, 1352, 1451, 1525, 1705, 1900, 2071
CviQI	GTAC	2 cut(s)	325, 1897
DdeI	CTNAG	5 cut(s)	537, 753, 1537, 1767, 1875
DpnI	GATC	3 cut(s)	655, 1350, 2009
DpnII	GATC	3 cut(s)	653, 1348, 2007
DriI	GACNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	300, 315
EagI	CGGCCG	1 cut(s)	300
Eam1105I	GACNNNNNGTC	1 cut(s)	277
EciI	GGCGGA	4 cut(s)	65, 100, 115, 950
Ecl136II	GAGCTC	1 cut(s)	469
EclXI	CGGCCG	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	846
Eco147I	AGGCCT	2 cut(s)	416, 1880
Eco24I	GRGCYC	3 cut(s)	471, 822, 872
Eco52I	CGGCCG	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	27
Eco81I	CCTNAGG	1 cut(s)	1537
Eco91I	GGTNACC	2 cut(s)	647, 1405
EcoICRI	GAGCTC	1 cut(s)	469
EcoNI	CCTNNNNNAGG	2 cut(s)	608, 1369
EcoO109I	RGGNCCY	1 cut(s)	1570
EcoO65I	GGTNACC	2 cut(s)	647, 1405
EcoRII	CCWGG	7 cut(s)	19, 189, 603, 629, 639, 825, 1409
EcoT14I	CCWWGG	1 cut(s)	846
EcoT22I	ATGCAT	3 cut(s)	837, 1786, 1852
EcoT38I	GRGCYC	3 cut(s)	471, 822, 872
ErhI	CCWWGG	1 cut(s)	846
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	8 cut(s)	263, 850, 1355, 1454, 1528, 1708, 1903, 2074
FalI	AAGNNNNNCTT	2 cut(s)	1587, 1619
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	8 cut(s)	259, 846, 1351, 1450, 1524, 1704, 1899, 2070
FauI	CCCGC	2 cut(s)	41, 212
FbaI	TGATCA	1 cut(s)	1348
Fnu4HI	GCNGC	5 cut(s)	195, 542, 779, 1023, 1184
FokI	GGATG	9 cut(s)	59, 139, 473, 646, 1097, 1387, 1571, 1699, 1883
FriOI	GRGCYC	3 cut(s)	471, 822, 872
Fsp4HI	GCNGC	5 cut(s)	195, 542, 779, 1023, 1184
FspBI	CTAG	8 cut(s)	677, 858, 984, 1173, 1218, 1818, 2016, 2040
GlaI	GCGC	9 cut(s)	102, 423, 495, 583, 589, 615, 638, 1144, 1500
GluI	GCNGC	5 cut(s)	195, 542, 779, 1023, 1184
GsaI	CCCAGC	1 cut(s)	825
GsuI	CTGGAG	2 cut(s)	422, 626
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	9 cut(s)	194, 302, 317, 332, 341, 416, 1446, 1572, 1880
HapII	CCGG	7 cut(s)	299, 328, 338, 813, 918, 1082, 1128
HgaI	GACGC	3 cut(s)	267, 510, 1954
HhaI	GCGC	9 cut(s)	103, 424, 496, 584, 590, 616, 639, 1145, 1501
Hin1I	GRCGYC	3 cut(s)	163, 278, 287
Hin1II	CATG	8 cut(s)	263, 850, 1355, 1454, 1528, 1708, 1903, 2074
Hin6I	GCGC	9 cut(s)	101, 422, 494, 582, 588, 614, 637, 1143, 1499
HinP1I	GCGC	9 cut(s)	101, 422, 494, 582, 588, 614, 637, 1143, 1499
HincII	GTYRAC	3 cut(s)	552, 561, 1636
HindII	GTYRAC	3 cut(s)	552, 561, 1636
HindIII	AAGCTT	1 cut(s)	731
HpaII	CCGG	7 cut(s)	299, 328, 338, 813, 918, 1082, 1128
HphI	GGTGA	1 cut(s)	1071
Hpy166II	GTNNAC	3 cut(s)	552, 561, 1636
Hpy188I	TCNGA	7 cut(s)	500, 508, 658, 754, 1384, 1608, 1768
Hpy188III	TCNNGA	9 cut(s)	159, 260, 439, 664, 1226, 1346, 1525, 1988, 2027
Hpy8I	GTNNAC	3 cut(s)	552, 561, 1636
Hpy99I	CGWCG	5 cut(s)	165, 168, 283, 289, 1970
HpyAV	CCTTC	7 cut(s)	51, 241, 604, 1012, 1153, 1561, 1897
HpyCH4III	ACNGT	3 cut(s)	647, 1405, 2055
HpyCH4IV	ACGT	7 cut(s)	163, 287, 395, 548, 1311, 1628, 1926
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 338, 442, 538, 822, 995, 1297, 1505, 1781
HpyF3I	CTNAG	5 cut(s)	537, 753, 1537, 1767, 1875
HpySE526I	ACGT	7 cut(s)	163, 287, 395, 548, 1311, 1628, 1926
Hsp92I	GRCGYC	3 cut(s)	163, 278, 287
Hsp92II	CATG	8 cut(s)	263, 850, 1355, 1454, 1528, 1708, 1903, 2074
HspAI	GCGC	9 cut(s)	101, 422, 494, 582, 588, 614, 637, 1143, 1499
KroI	GCCGGC	1 cut(s)	812
KroNI	GCCGGC	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	1348
Kzo9I	GATC	3 cut(s)	653, 1348, 2007
LmnI	GCTCC	8 cut(s)	223, 257, 380, 441, 474, 509, 1275, 1543
Lsp1109I	GCAGC	3 cut(s)	765, 1034, 1195
LweI	GCATC	6 cut(s)	624, 1027, 1102, 1365, 1657, 1861
MaeI	CTAG	8 cut(s)	677, 858, 984, 1173, 1218, 1818, 2016, 2040
MaeII	ACGT	7 cut(s)	163, 287, 395, 548, 1311, 1628, 1926
MaeIII	GTNAC	8 cut(s)	288, 647, 1053, 1405, 1615, 1930, 2020, 2049
MalI	GATC	3 cut(s)	655, 1350, 2009
MboI	GATC	3 cut(s)	653, 1348, 2007
MboII	GAAGA	4 cut(s)	85, 1046, 1871, 2012
MhlI	GDGCHC	4 cut(s)	471, 822, 872, 1092
MlyI	GAGTC	5 cut(s)	266, 329, 547, 758, 1600
Mph1103I	ATGCAT	3 cut(s)	837, 1786, 1852
MroNI	GCCGGC	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	1784
MseI	TTAA	8 cut(s)	693, 728, 1005, 1518, 1662, 1740, 1841, 1845
MslI	CAYNNNNRTG	1 cut(s)	887
MspA1I	CMGCKG	3 cut(s)	313, 541, 778
MspCI	CTTAAG	1 cut(s)	1004
MspI	CCGG	7 cut(s)	299, 328, 338, 813, 918, 1082, 1128
Mva1269I	GAATGC	2 cut(s)	1784, 1786
MvaI	CCWGG	7 cut(s)	21, 191, 605, 631, 641, 827, 1411
MvnI	CGCG	6 cut(s)	101, 422, 494, 584, 1145, 1965
MwoI	GCNNNNNNNGC	9 cut(s)	10, 338, 442, 538, 822, 995, 1297, 1505, 1781
NaeI	GCCGGC	1 cut(s)	814
NciI	CCSGG	3 cut(s)	299, 329, 338
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	3 cut(s)	653, 1348, 2007
NgoMIV	GCCGGC	1 cut(s)	812
NheI	GCTAGC	1 cut(s)	1172
NlaIII	CATG	8 cut(s)	263, 850, 1355, 1454, 1528, 1708, 1903, 2074
NlaIV	GGNNCC	4 cut(s)	25, 342, 437, 1986
NmeAIII	GCCGAG	3 cut(s)	254, 328, 343
NmuCI	GTSAC	2 cut(s)	288, 1053
NsiI	ATGCAT	3 cut(s)	837, 1786, 1852
OliI	CACNNNNGTG	1 cut(s)	887
PacI	TTAATTAA	1 cut(s)	1845
PagI	TCATGA	2 cut(s)	259, 1524
PceI	AGGCCT	2 cut(s)	416, 1880
PcsI	WCGNNNNNNNCGW	4 cut(s)	281, 300, 504, 554
PctI	GAATGC	2 cut(s)	1784, 1786
PdiI	GCCGGC	1 cut(s)	814
PdmI	GAANNNNTTC	1 cut(s)	1784
PfeI	GAWTC	5 cut(s)	131, 713, 1043, 1390, 2086
PfoI	TCCNGGA	1 cut(s)	629
PkrI	GCNGC	5 cut(s)	196, 543, 780, 1024, 1185
Ple19I	CGATCG	1 cut(s)	656
PleI	GAGTC	5 cut(s)	266, 328, 547, 757, 1599
PpsI	GAGTC	5 cut(s)	266, 328, 547, 757, 1599
PshBI	ATTAAT	3 cut(s)	1740, 1841, 1845
PsiI	TTATAA	1 cut(s)	1980
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	7 cut(s)	19, 189, 603, 629, 639, 825, 1409
PspEI	GGTNACC	2 cut(s)	647, 1405
PspFI	CCCAGC	1 cut(s)	821
PspGI	CCWGG	7 cut(s)	19, 189, 603, 629, 639, 825, 1409
PspN4I	GGNNCC	4 cut(s)	25, 342, 437, 1986
PspPI	GGNCC	3 cut(s)	330, 340, 1570
PstI	CTGCAG	1 cut(s)	1702
PstNI	CAGNNNCTG	1 cut(s)	2083
PvuI	CGATCG	1 cut(s)	656
PvuII	CAGCTG	2 cut(s)	313, 778
RsaI	GTAC	2 cut(s)	326, 1898
RsaNI	GTAC	2 cut(s)	325, 1897
RseI	CAYNNNNRTG	1 cut(s)	887
SacI	GAGCTC	1 cut(s)	471
SaqAI	TTAA	8 cut(s)	693, 728, 1005, 1518, 1662, 1740, 1841, 1845
SatI	GCNGC	5 cut(s)	195, 542, 779, 1023, 1184
Sau3AI	GATC	3 cut(s)	653, 1348, 2007
Sau96I	GGNCC	3 cut(s)	330, 340, 1570
SchI	GAGTC	5 cut(s)	266, 329, 547, 758, 1600
SduI	GDGCHC	4 cut(s)	471, 822, 872, 1092
SfaNI	GCATC	6 cut(s)	624, 1027, 1102, 1365, 1657, 1861
SfcI	CTRYAG	1 cut(s)	1698
SfiI	GGCCNNNNNGGCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
SseBI	AGGCCT	2 cut(s)	416, 1880
SspMI	CTAG	8 cut(s)	677, 858, 984, 1173, 1218, 1818, 2016, 2040
SstI	GAGCTC	1 cut(s)	471
StuI	AGGCCT	2 cut(s)	416, 1880
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	3 cut(s)	647, 1405, 2055
TaiI	ACGT	7 cut(s)	166, 290, 398, 551, 1314, 1631, 1929
TaqI	TCGA	3 cut(s)	294, 948, 1968
TatI	WGTACW	1 cut(s)	1896
TauI	GCSGC	2 cut(s)	197, 544
TfiI	GAWTC	5 cut(s)	131, 713, 1043, 1390, 2086
Tru1I	TTAA	8 cut(s)	693, 728, 1005, 1518, 1662, 1740, 1841, 1845
Tru9I	TTAA	8 cut(s)	693, 728, 1005, 1518, 1662, 1740, 1841, 1845
TscAI	CASTG	4 cut(s)	1005, 1285, 1782, 2088
TseFI	GTSAC	2 cut(s)	288, 1053
TseI	GCWGC	3 cut(s)	778, 1022, 1183
Tsp45I	GTSAC	2 cut(s)	288, 1053
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	4 cut(s)	1005, 1285, 1782, 2088
Vha464I	CTTAAG	1 cut(s)	1004
VspI	ATTAAT	3 cut(s)	1740, 1841, 1845
XagI	CCTNNNNNAGG	2 cut(s)	608, 1369
XapI	RAATTY	1 cut(s)	1973
XmnI	GAANNNNTTC	1 cut(s)	1784
XspI	CTAG	8 cut(s)	677, 858, 984, 1173, 1218, 1818, 2016, 2040
ZraI	GACGTC	2 cut(s)	164, 288
Zsp2I	ATGCAT	3 cut(s)	837, 1786, 1852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.