Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8272487.1

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 831

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8272487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ccaccaccaccacatcttccacgcgcctccctccgccgtttccacttccgccgaatctcatctccccccaatttcatcctctcgacgtcgtttggataactacgataccgaccaggccgccgtttcccgctacgacttcgctccactcctcgccttcctctccacctcgtccagctccactcatgacgacattgactcggcgtcgccgacgtcactcgacccggccgagttccagctggccgagtcgtaccgggccgtcccggcccctctctggcactccctcctcaaatccctctgctcctcctcctcctcctcctccttgaaacaggcctacgcgctcgtttcgtggctccagaagcacaacctctgcttctcctatgagctcctctactccatcctcatccacgcgctcggacgctccgagaagctctacgaggcgttcctgctctctcagcggcagacgttgactccgttgacctacaacgctctcatcggcgcgtgcgctcgcaacggcgacctggagaaggcgctcaatttgatgtccaggatgcgccaggacggttaccggtcggatttcgtgaattacagcctggtaattcagtcgcttaatcgctcaaacaaggttgattctccaattatgttaaagctttacagggagattgagtctgagaatgttgagattgatggacagctgctaaatgatttgattgttggcttcgcaaaagccggcgagcccagccaggctatgcattttcttgccatggtgcaggctagtggtttgagccccaaaaccgccactctggtggcggttatttcggctttggggaactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

277

Amino Acids

30.48

Weight (kDa)

6.26

Isoelectric Point (pI)

62.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	89, 213
AccII	CGCG	4 cut(s)	24, 336, 408, 498
AciI	CCGC	7 cut(s)	34, 49, 118, 128, 455, 793, 807
AcoI	YGGCCR	2 cut(s)	223, 238
AcyI	GRCGYC	3 cut(s)	86, 201, 210
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	271, 524
AgeI	ACCGGT	1 cut(s)	565
AgsI	TTSAA	1 cut(s)	323
AhdI	GACNNNNNGTC	1 cut(s)	200
AjnI	CCWGG	6 cut(s)	112, 517, 543, 553, 589, 739
AleI	CACNNNNGTG	1 cut(s)	801
AluBI	AGCT	6 cut(s)	175, 236, 383, 428, 647, 692
AluI	AGCT	6 cut(s)	175, 236, 383, 428, 647, 692
Alw21I	GWGCWC	1 cut(s)	385
AoxI	GGCC	6 cut(s)	115, 223, 238, 253, 262, 328
ApeKI	GCWGC	1 cut(s)	692
AsiGI	ACCGGT	1 cut(s)	565
AspLEI	GCGC	7 cut(s)	26, 338, 410, 498, 504, 530, 553
AspS9I	GGNCC	2 cut(s)	253, 263
AsuC2I	CCSGG	3 cut(s)	222, 252, 261
BanII	GRGCYC	3 cut(s)	385, 736, 786
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	2 cut(s)	402, 678
BceAI	ACGGC	4 cut(s)	21, 105, 240, 527
BciT130I	CCWGG	6 cut(s)	114, 519, 545, 555, 591, 741
BcnI	CCSGG	3 cut(s)	222, 252, 261
BfaI	CTAG	1 cut(s)	772
BfoI	RGCGCY	1 cut(s)	531
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	3 cut(s)	118, 456, 693
BlsI	GCNGC	3 cut(s)	119, 457, 694
Bme1390I	CCNGG	9 cut(s)	114, 222, 252, 261, 519, 545, 555, 591, 741
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	253, 263
BmiI	GGNNCC	2 cut(s)	265, 351
BmrFI	CCNGG	9 cut(s)	114, 222, 252, 261, 519, 545, 555, 591, 741
BmsI	GCATC	1 cut(s)	538
BpmI	CTGGAG	2 cut(s)	336, 540
BpuMI	CCSGG	3 cut(s)	222, 252, 261
BsaHI	GRCGYC	3 cut(s)	86, 201, 210
BsaJI	CCNNGG	1 cut(s)	760
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	4 cut(s)	452, 482, 648, 678
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 524
Bse118I	RCCGGY	2 cut(s)	565, 726
BseBI	CCWGG	6 cut(s)	114, 519, 545, 555, 591, 741
BseDI	CCNNGG	1 cut(s)	760
BseGI	GGATG	4 cut(s)	75, 394, 400, 553
BseLI	CCNNNNNNNGG	2 cut(s)	271, 524
BseMII	CTCAG	2 cut(s)	465, 658
BseRI	GAGGAG	9 cut(s)	138, 273, 290, 293, 296, 299, 302, 305, 375
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	679
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	1 cut(s)	786
Bsh1236I	CGCG	4 cut(s)	24, 336, 408, 498
Bsh1285I	CGRYCG	2 cut(s)	226, 570
BshFI	GGCC	6 cut(s)	117, 225, 240, 255, 264, 330
BshTI	ACCGGT	1 cut(s)	565
BsiEI	CGRYCG	2 cut(s)	226, 570
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	5 cut(s)	222, 251, 261, 566, 727
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	271, 524
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	6 cut(s)	117, 225, 240, 255, 264, 330
Bsp1286I	GDGCHC	3 cut(s)	385, 736, 786
Bsp19I	CCATGG	1 cut(s)	760
BspACI	CCGC	7 cut(s)	34, 49, 118, 128, 455, 793, 807
BspANI	GGCC	6 cut(s)	117, 225, 240, 255, 264, 330
BspCNI	CTCAG	2 cut(s)	464, 659
BspFNI	CGCG	4 cut(s)	24, 336, 408, 498
BspHI	TCATGA	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	265, 351
BsrFI	RCCGGY	2 cut(s)	565, 726
BssAI	RCCGGY	2 cut(s)	565, 726
BssECI	CCNNGG	1 cut(s)	760
BssNI	GRCGYC	3 cut(s)	86, 201, 210
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	6 cut(s)	114, 519, 545, 555, 591, 741
Bst4CI	ACNGT	1 cut(s)	561
BstACI	GRCGYC	3 cut(s)	86, 201, 210
BstC8I	GCNNGC	6 cut(s)	238, 500, 506, 728, 732, 769
BstDEI	CTNAG	2 cut(s)	451, 667
BstDSI	CCRYGG	1 cut(s)	760
BstEII	GGTNACC	1 cut(s)	561
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	4 cut(s)	75, 394, 400, 553
BstFNI	CGCG	4 cut(s)	24, 336, 408, 498
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	7 cut(s)	26, 338, 410, 498, 504, 530, 553
BstMCI	CGRYCG	2 cut(s)	226, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 356, 452, 736
BstNI	CCWGG	6 cut(s)	114, 519, 545, 555, 591, 741
BstPI	GGTNACC	1 cut(s)	561
BstSCI	CCNGG	9 cut(s)	112, 220, 250, 259, 517, 543, 553, 589, 739
BstUI	CGCG	4 cut(s)	24, 336, 408, 498
BstV1I	GCAGC	1 cut(s)	679
BstXI	CCANNNNNNTGG	1 cut(s)	803
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	6 cut(s)	117, 225, 240, 255, 264, 330
BtgI	CCRYGG	1 cut(s)	760
BtsCI	GGATG	4 cut(s)	75, 394, 400, 553
Cac8I	GCNNGC	6 cut(s)	238, 500, 506, 728, 732, 769
CciI	TCATGA	1 cut(s)	182
CfoI	GCGC	7 cut(s)	26, 338, 410, 498, 504, 530, 553
Cfr10I	RCCGGY	2 cut(s)	565, 726
Cfr13I	GGNCC	2 cut(s)	253, 263
CseI	GACGC	2 cut(s)	190, 424
Csp6I	GTAC	1 cut(s)	248
CspAI	ACCGGT	1 cut(s)	565
CviAII	CATG	2 cut(s)	183, 761
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	2 cut(s)	451, 667
DriI	GACNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	223, 238
EagI	CGGCCG	1 cut(s)	223
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EciI	GGCGGA	2 cut(s)	23, 38
Ecl136II	GAGCTC	1 cut(s)	383
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	760
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	3 cut(s)	385, 736, 786
Eco52I	CGGCCG	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO65I	GGTNACC	1 cut(s)	561
EcoRII	CCWGG	6 cut(s)	112, 517, 543, 553, 589, 739
EcoT14I	CCWWGG	1 cut(s)	760
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	3 cut(s)	385, 736, 786
ErhI	CCWWGG	1 cut(s)	760
FaeI	CATG	2 cut(s)	186, 764
FaiI	YATR	5 cut(s)	184, 379, 639, 747, 762
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	182, 760
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	118, 456, 693
FokI	GGATG	4 cut(s)	62, 381, 387, 560
FriOI	GRGCYC	3 cut(s)	385, 736, 786
Fsp4HI	GCNGC	3 cut(s)	118, 456, 693
FspBI	CTAG	1 cut(s)	772
GlaI	GCGC	7 cut(s)	25, 337, 409, 497, 503, 529, 552
GluI	GCNGC	3 cut(s)	118, 456, 693
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	2 cut(s)	336, 540
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	6 cut(s)	117, 225, 240, 255, 264, 330
HapII	CCGG	5 cut(s)	222, 251, 261, 566, 727
HgaI	GACGC	2 cut(s)	190, 424
HhaI	GCGC	7 cut(s)	26, 338, 410, 498, 504, 530, 553
Hin1I	GRCGYC	3 cut(s)	86, 201, 210
Hin1II	CATG	2 cut(s)	186, 764
Hin6I	GCGC	7 cut(s)	24, 336, 408, 496, 502, 528, 551
HinP1I	GCGC	7 cut(s)	24, 336, 408, 496, 502, 528, 551
HincII	GTYRAC	2 cut(s)	466, 475
HindII	GTYRAC	2 cut(s)	466, 475
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	6 cut(s)	54, 195, 243, 467, 627, 663
HpaII	CCGG	5 cut(s)	222, 251, 261, 566, 727
Hpy166II	GTNNAC	2 cut(s)	466, 475
Hpy188I	TCNGA	4 cut(s)	414, 422, 572, 668
Hpy188III	TCNNGA	4 cut(s)	82, 183, 353, 578
Hpy8I	GTNNAC	2 cut(s)	466, 475
Hpy99I	CGWCG	4 cut(s)	88, 91, 206, 212
HpyAV	CCTTC	2 cut(s)	164, 518
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	3 cut(s)	86, 210, 462
HpyCH4V	TGCA	2 cut(s)	749, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 356, 452, 736
HpyF3I	CTNAG	2 cut(s)	451, 667
HpySE526I	ACGT	3 cut(s)	86, 210, 462
Hsp92I	GRCGYC	3 cut(s)	86, 201, 210
Hsp92II	CATG	2 cut(s)	186, 764
HspAI	GCGC	7 cut(s)	24, 336, 408, 496, 502, 528, 551
KroI	GCCGGC	1 cut(s)	726
KroNI	GCCGGC	1 cut(s)	728
LmnI	GCTCC	6 cut(s)	146, 180, 303, 355, 388, 423
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	1 cut(s)	772
MaeII	ACGT	3 cut(s)	86, 210, 462
MaeIII	GTNAC	2 cut(s)	211, 561
MboII	GAAGA	1 cut(s)	8
MhlI	GDGCHC	3 cut(s)	385, 736, 786
MluCI	AATT	5 cut(s)	70, 533, 581, 595, 634
MlyI	GAGTC	4 cut(s)	189, 252, 461, 672
MmeI	TCCRAC	1 cut(s)	550
Mph1103I	ATGCAT	1 cut(s)	751
MroNI	GCCGGC	1 cut(s)	726
MseI	TTAA	2 cut(s)	607, 642
MslI	CAYNNNNRTG	1 cut(s)	801
MspA1I	CMGCKG	3 cut(s)	236, 455, 692
MspI	CCGG	5 cut(s)	222, 251, 261, 566, 727
MspR9I	CCNGG	9 cut(s)	114, 222, 252, 261, 519, 545, 555, 591, 741
MvaI	CCWGG	6 cut(s)	114, 519, 545, 555, 591, 741
MvnI	CGCG	4 cut(s)	24, 336, 408, 498
MwoI	GCNNNNNNNGC	4 cut(s)	261, 356, 452, 736
NaeI	GCCGGC	1 cut(s)	728
NciI	CCSGG	3 cut(s)	222, 252, 261
NcoI	CCATGG	1 cut(s)	760
NgoMIV	GCCGGC	1 cut(s)	726
NlaIII	CATG	2 cut(s)	186, 764
NlaIV	GGNNCC	2 cut(s)	265, 351
NmeAIII	GCCGAG	3 cut(s)	177, 251, 266
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	751
OliI	CACNNNNGTG	1 cut(s)	801
PagI	TCATGA	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	4 cut(s)	204, 223, 418, 468
PdiI	GCCGGC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	54, 627
PfoI	TCCNGGA	1 cut(s)	543
PinAI	ACCGGT	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	119, 457, 694
PleI	GAGTC	4 cut(s)	189, 251, 461, 671
PpsI	GAGTC	4 cut(s)	189, 251, 461, 671
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	6 cut(s)	112, 517, 543, 553, 589, 739
PspEI	GGTNACC	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	6 cut(s)	112, 517, 543, 553, 589, 739
PspN4I	GGNNCC	2 cut(s)	265, 351
PspPI	GGNCC	2 cut(s)	253, 263
PvuII	CAGCTG	2 cut(s)	236, 692
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	801
SacI	GAGCTC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	607, 642
SatI	GCNGC	3 cut(s)	118, 456, 693
Sau96I	GGNCC	2 cut(s)	253, 263
SchI	GAGTC	4 cut(s)	189, 252, 461, 672
ScrFI	CCNGG	9 cut(s)	114, 222, 252, 261, 519, 545, 555, 591, 741
SduI	GDGCHC	3 cut(s)	385, 736, 786
SfaNI	GCATC	1 cut(s)	538
SfiI	GGCCNNNNNGGCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	801
Sse9I	AATT	5 cut(s)	70, 533, 581, 595, 634
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	7 cut(s)	34, 49, 118, 128, 455, 793, 807
SspMI	CTAG	1 cut(s)	772
SstI	GAGCTC	1 cut(s)	385
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	9 cut(s)	112, 220, 250, 259, 517, 543, 553, 589, 739
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	3 cut(s)	89, 213, 465
TaqI	TCGA	2 cut(s)	83, 217
TasI	AATT	5 cut(s)	70, 533, 581, 595, 634
TauI	GCSGC	2 cut(s)	120, 458
TfiI	GAWTC	2 cut(s)	54, 627
Tru1I	TTAA	2 cut(s)	607, 642
Tru9I	TTAA	2 cut(s)	607, 642
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	460
XagI	CCTNNNNNAGG	1 cut(s)	522
XspI	CTAG	1 cut(s)	772
ZraI	GACGTC	2 cut(s)	87, 211
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.