Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Reverse (-)

122700 .. 126112

Gene Structure 3413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1002100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGATGCTTCTGCCAGTGCCACTGCCAGGTTCGACTTGCTTCCCTTCCATTCAATTTACTTCGTCCATACTCATCCGCCACCACCACCATGTCTGGCCTCTGTCCGCCACCGCAGCCGCTGCCGTTACCAATTCATCCGAACCCCATCTGCCCCCAAATCCATCTTCCTCAACTACGATTCATTCAACCCCAACCTCAACCTCAACCTCGACACGACGCCTTGGAGACGACCAAGCTGCGGCTTCCGCCCACGACTTCGGTCCCCTCCTCACCTTCCTCGCCAACTCCATGTCATCCGATGATGATTCTGCCTCCTCCTCCTCCTCCTCCCCAACCTCACTCGACCCGACGGAGTTCCAGCTGGCCCAGTCCTACGGCGCTGTCCCCGCCCCACTCTGGCACTCTCTCCTCAAATCCCTCTGCGCCTCCTCCTCCTCCTCCTCCATTGGACTTGCCTACGCCGTCGTTTCGTGGCTCCAAAAGCACAACCTCTGCTTCTCCTATGAACTCTTCTACTCCATCCTCATCCACGCCCTCGGCCGCTCCGAGAAGCTCTTCGAGGCCTTCTTGCTCTCCCAGCGCCAATCCCTCACTCCCCTCGCCTACAATGCCCTCATCGGCGCCTGTGCTCGCAACGGCGACCTCGAGAAGGCCCTCCATTTGATGTCCCGCATGCACCAGGACGGTTACGGCTCCGACTTTGTCTACTACAGCTTGATCATTCAGTCCCTCACCCGCTCCAACAAGATTGATTCTCCAATCATGCTCAAGCTCTACAGGGAGATCGAGTCCGAGAGCATTGAGATTGATGACCAGCTCTTCAACGACATCATTGCTGGTTTTGCTAAAGCCGGCGAGCCCTCCCAGGCTATGCACCTTCTGGCCATGGTCCAGGCCACTGGCTTGAACCCCAAAACCGCCACTCTGGTTGCTGTCATCTCATCCTTAGGGAATTCCGGCAGGGTAGTAGAAGCCGAAGCTATCTTCGAGGAAATGAGAGAAGGAGGACTGCAACCCAGGACCAGGGCCTACAATGCCCTCCTCAAAGGCTATGTAAAGGCAGGTCAACTGAAAGATGCCGAATCCATCGTGTCCCAGATGGAGAAGAGCGGCATTTCCCCCGATGAGCACACTTACAGCCTGCTCATCGATGCCTATGCAAATGCTGGCAGGTGGGAAAGCGCAAGAATTGTGTTGAAAGAGATGGAAGCTGGCAATGTGCAGACCAATTCTTATGTTTTCAGCAGGATTTTAGCCAGCTACCGCGATAGAGGGGAGTGGCAAAAGTCGTTCCAAGTTTTGAGGGAGATGAAGAGCAGTGGAGTAAGACCCGATAGGCATTTTTACAATGTCATGATTGACACTTGTGGAAAGTCCAATTGTCTTGATAATGCTATGGCTACCTTTGAAAGGATGCTATCTGAGGGAATCGACCCGGACACCGTCACCTGGAATACGCTTATAGATTGTTATTGCAAGTCAAGCCACCATGTAAGGGCGGAGGAGCTGTTTGAGGAAATGCAGCAAAGTGGGTGTGCCCCTTGCGCCACCACCTATAACATCATGATCAATTCCTTTGGGGAGCAGCAAAGGTGGGATGATGTGAAAGGCTTGTTGGGGAAGATGCAGGCTCAGGGTTTACTGCCCAACATAGTTACGTATACCACATTGGTTGACATTTATGGAAAGTCGGGTAGATTTACTGATGCAATAGAGTGTTTGGAGGTTATGAAGTCTGCAGGCATGAAACCATCCCCGACAATGTACAATGCCTTAATTAATGCCTATGCACAAAGAGTAATGAGAGCAGATGGATTAAAACCCAGTCCCTTGGCTTTCAATTCGTTAATCAATGCATTTGGTGAAGATAGAAGGGATACTGAGGCCTTTTCTGTGTTGCAGTACATGAAGGAAAATGACCTGAAACCAGATGTAGTTACGTATACTACACTTATGAAAACCCTTATCCGTGTTGATAAATTTTATAAGGTTCCAGCAGTGTATGAAGAAATGATTATGTCTGGTTGCACTCCAGATAGGAAAGCTAGGGCTATGTTACGGTCTGCGCTGAAATACATGAAACAAACACTCAGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

700

Amino Acids

77.33

Weight (kDa)

6.13

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	191 - 293	9.8e-07	Fungal tetratrico peptide repeats
PPR	PF01535	201 - 229	7.6e-07	PPR repeat
PPR_long	PF17177	202 - 356	2e-08	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	249 - 391	3e-13	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	260 - 361	4.6e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	328 - 388	4.5e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	341 - 388	5.5e-15	PPR repeat family
PPR	PF01535	343 - 372	1.8e-06	PPR repeat
PPR_long	PF17177	359 - 445	2.1e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	361 - 471	1e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	371 - 403	4.3e-06	PPR repeat
PPR_3	PF13812	398 - 458	6e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	416 - 458	2.3e-06	PPR repeat family
PPR_2	PF13041	444 - 483	2.6e-06	PPR repeat family
PPR_long	PF17177	449 - 597	2e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	470 - 528	8.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	476 - 508	1.3e-10	PPR repeat
PPR_2	PF13041	479 - 526	8.3e-17	PPR repeat family
PPR	PF01535	482 - 512	7.2e-10	PPR repeat
PPR_2	PF13041	514 - 559	1e-09	PPR repeat family
PPR_3	PF13812	538 - 598	6.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	546 - 578	4e-07	PPR repeat
PPR_2	PF13041	549 - 597	2.6e-10	PPR repeat family
PPR	PF01535	552 - 581	7.7e-06	PPR repeat
PPR_3	PF13812	601 - 654	5e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	611 - 655	1.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1986
AarI	CACCTGC	1 cut(s)	1161
Acc36I	ACCTGC	2 cut(s)	1052, 1161
AccB1I	GGYRCC	1 cut(s)	620
AccBSI	CCGCTC	3 cut(s)	543, 738, 1110
AccI	GTMKAC	3 cut(s)	705, 1661, 1943
AccII	CGCG	1 cut(s)	1266
AclWI	GGATC	1 cut(s)	2088
AcoI	YGGCCR	2 cut(s)	538, 882
AcsI	RAATTY	2 cut(s)	952, 1979
AcyI	GRCGYC	2 cut(s)	217, 621
AfaI	GTAC	2 cut(s)	1766, 1904
AfiI	CCNNNNNNNGG	8 cut(s)	26, 238, 396, 649, 1023, 1410, 1449, 1495
AgsI	TTSAA	7 cut(s)	53, 186, 823, 907, 1198, 1409, 1840
AjnI	CCWGG	7 cut(s)	25, 678, 864, 891, 1016, 1022, 1448
AjuI	GAANNNNNNNTTGG	4 cut(s)	148, 180, 1598, 1630
Alw21I	GWGCWC	2 cut(s)	631, 1131
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	2088
AlwNI	CAGNNNCTG	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	9 cut(s)	95, 363, 538, 561, 651, 882, 894, 1026, 1884
ApeKI	GCWGC	5 cut(s)	113, 119, 236, 1522, 1585
ApoI	RAATTY	2 cut(s)	952, 1979
AseI	ATTAAT	1 cut(s)	1779
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	7 cut(s)	380, 425, 582, 623, 1184, 1547, 2068
AspS9I	GGNCC	6 cut(s)	260, 364, 652, 889, 1020, 1026
AsuC2I	CCSGG	1 cut(s)	1436
AsuHPI	GGTGA	4 cut(s)	262, 724, 1438, 1874
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	3 cut(s)	260, 889, 1020
AxyI	CCTNAGG	1 cut(s)	946
BaeGI	GKGCMC	1 cut(s)	1540
BalI	TGGCCA	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	861
Bbv12I	GWGCWC	2 cut(s)	631, 1131
BbvI	GCAGC	5 cut(s)	106, 125, 223, 1534, 1597
BccI	CCATC	8 cut(s)	153, 169, 527, 1093, 1094, 1198, 1759, 1805
BceAI	ACGGC	5 cut(s)	107, 391, 446, 652, 706
BcgI	CGANNNNNNTGC	6 cut(s)	218, 252, 815, 849, 1139, 1173
BciT130I	CCWGG	7 cut(s)	27, 680, 866, 893, 1018, 1024, 1450
BciVI	GTATCC	1 cut(s)	1870
BclI	TGATCA	2 cut(s)	717, 1566
BcnI	CCSGG	1 cut(s)	1436
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	2046
BfmI	CTRYAG	3 cut(s)	709, 775, 1737
BfoI	RGCGCY	3 cut(s)	381, 583, 624
BfuAI	ACCTGC	2 cut(s)	1052, 1161
BfuI	GTATCC	1 cut(s)	1870
BisI	GCNGC	9 cut(s)	114, 117, 120, 237, 240, 541, 1111, 1523, 1586
BlsI	GCNGC	9 cut(s)	115, 118, 121, 238, 241, 542, 1112, 1524, 1587
Bme1390I	CCNGG	8 cut(s)	27, 680, 866, 893, 1018, 1024, 1436, 1450
Bme18I	GGWCC	3 cut(s)	260, 889, 1020
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	6 cut(s)	260, 364, 652, 889, 1020, 1026
BmiI	GGNNCC	5 cut(s)	262, 476, 622, 694, 1992
BmrFI	CCNGG	8 cut(s)	27, 680, 866, 893, 1018, 1024, 1436, 1450
BmrI	ACTGGG	2 cut(s)	361, 1818
BmsI	GCATC	5 cut(s)	1066, 1141, 1404, 1614, 1696
BmuI	ACTGGG	2 cut(s)	361, 1818
BoxI	GACNNNNGTC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	2016
Bpu10I	CCTNAGC	1 cut(s)	1632
BpuEI	CTTGAG	1 cut(s)	752
BpuMI	CCSGG	1 cut(s)	1436
Bsa29I	ATCGAT	1 cut(s)	1149
BsaAI	YACGTR	2 cut(s)	1659, 1941
BsaHI	GRCGYC	2 cut(s)	217, 621
BsaJI	CCNNGG	7 cut(s)	220, 535, 864, 885, 1016, 1023, 1830
BsaXI	ACNNNNNCTCC	4 cut(s)	773, 803, 1493, 1523
Bsc4I	CCNNNNNNNGG	8 cut(s)	26, 238, 396, 649, 1023, 1410, 1449, 1495
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	4 cut(s)	14, 367, 904, 1824
Bse21I	CCTNAGG	1 cut(s)	946
Bse3DI	GCAATG	2 cut(s)	831, 1222
BseBI	CCWGG	7 cut(s)	27, 680, 866, 893, 1018, 1024, 1450
BseCI	ATCGAT	1 cut(s)	1149
BseDI	CCNNGG	7 cut(s)	220, 535, 864, 885, 1016, 1023, 1830
BseGI	GGATG	9 cut(s)	72, 134, 293, 519, 525, 941, 1419, 1603, 1751
BseLI	CCNNNNNNNGG	8 cut(s)	26, 238, 396, 649, 1023, 1410, 1449, 1495
BseMI	GCAATG	2 cut(s)	831, 1222
BseMII	CTCAG	3 cut(s)	1413, 1646, 1872
BseNI	ACTGG	4 cut(s)	14, 367, 904, 1824
BseSI	GKGCMC	1 cut(s)	1540
BseX3I	CGGCCG	1 cut(s)	538
BseXI	GCAGC	5 cut(s)	106, 125, 223, 1534, 1597
BseYI	CCCAGC	1 cut(s)	576
BsgI	GTGCAG	1 cut(s)	1241
Bsh1236I	CGCG	1 cut(s)	1266
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	9 cut(s)	97, 365, 540, 563, 653, 884, 896, 1028, 1886
BshNI	GGYRCC	1 cut(s)	620
BshVI	ATCGAT	1 cut(s)	1149
BsiEI	CGRYCG	1 cut(s)	541
BsiHKAI	GWGCWC	2 cut(s)	631, 1131
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	852, 957, 1436
BslFI	GGGAC	6 cut(s)	246, 368, 652, 712, 1078, 1812
BslI	CCNNNNNNNGG	8 cut(s)	26, 238, 396, 649, 1023, 1410, 1449, 1495
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	6 cut(s)	246, 368, 652, 712, 1078, 1812
BsnI	GGCC	9 cut(s)	97, 365, 540, 563, 653, 884, 896, 1028, 1886
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	4 cut(s)	631, 861, 1131, 1540
Bsp1407I	TGTACA	1 cut(s)	1764
Bsp143I	GATC	4 cut(s)	717, 783, 1566, 2093
Bsp19I	CCATGG	1 cut(s)	885
BspANI	GGCC	9 cut(s)	97, 365, 540, 563, 653, 884, 896, 1028, 1886
BspCNI	CTCAG	3 cut(s)	1414, 1645, 1873
BspDI	ATCGAT	1 cut(s)	1149
BspFNI	CGCG	1 cut(s)	1266
BspHI	TCATGA	2 cut(s)	1353, 1563
BspLI	GGNNCC	5 cut(s)	262, 476, 622, 694, 1992
BspMAI	CTGCAG	1 cut(s)	1741
BspMI	ACCTGC	2 cut(s)	1052, 1161
BspPI	GGATC	1 cut(s)	2088
BspQI	GCTCTTC	4 cut(s)	560, 824, 1100, 1307
BspT107I	GGYRCC	1 cut(s)	620
BsrBI	CCGCTC	3 cut(s)	543, 738, 1110
BsrDI	GCAATG	2 cut(s)	831, 1222
BsrFI	RCCGGY	1 cut(s)	851
BsrGI	TGTACA	1 cut(s)	1764
BsrI	ACTGG	4 cut(s)	14, 367, 904, 1824
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	7 cut(s)	220, 535, 864, 885, 1016, 1023, 1830
BssMI	GATC	4 cut(s)	717, 783, 1566, 2093
BssNAI	GTATAC	2 cut(s)	1662, 1944
BssNI	GRCGYC	2 cut(s)	217, 621
BssT1I	CCWWGG	3 cut(s)	220, 885, 1830
Bst1107I	GTATAC	2 cut(s)	1662, 1944
Bst2UI	CCWGG	7 cut(s)	27, 680, 866, 893, 1018, 1024, 1450
Bst4CI	ACNGT	3 cut(s)	686, 1444, 2061
Bst6I	CTCTTC	5 cut(s)	515, 560, 824, 1100, 1307
BstACI	GRCGYC	2 cut(s)	217, 621
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	1764
BstBAI	YACGTR	2 cut(s)	1659, 1941
BstDEI	CTNAG	5 cut(s)	946, 1422, 1632, 1881, 2090
BstDSI	CCRYGG	1 cut(s)	885
BstENI	CCTNNNNNAGG	2 cut(s)	647, 1408
BstF5I	GGATG	9 cut(s)	72, 134, 293, 519, 525, 941, 1419, 1603, 1751
BstFNI	CGCG	1 cut(s)	1266
BstH2I	RGCGCY	3 cut(s)	381, 583, 624
BstHHI	GCGC	7 cut(s)	380, 425, 582, 623, 1184, 1547, 2068
BstKTI	GATC	4 cut(s)	720, 786, 1569, 2096
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	4 cut(s)	717, 783, 1566, 2093
BstMCI	CGRYCG	1 cut(s)	541
BstNI	CCWGG	7 cut(s)	27, 680, 866, 893, 1018, 1024, 1450
BstNSI	RCATGY	1 cut(s)	676
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSCI	CCNGG	8 cut(s)	25, 678, 864, 891, 1016, 1022, 1434, 1448
BstSFI	CTRYAG	3 cut(s)	709, 775, 1737
BstSLI	GKGCMC	1 cut(s)	1540
BstSNI	TACGTA	2 cut(s)	1659, 1941
BstUI	CGCG	1 cut(s)	1266
BstV1I	GCAGC	5 cut(s)	106, 125, 223, 1534, 1597
BstX2I	RGATCY	1 cut(s)	2093
BstXI	CCANNNNNNTGG	2 cut(s)	899, 1831
BstYI	RGATCY	1 cut(s)	2093
BstZ17I	GTATAC	2 cut(s)	1662, 1944
BstZI	CGGCCG	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	1149
Bsu36I	CCTNAGG	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	1870
BsuRI	GGCC	9 cut(s)	97, 365, 540, 563, 653, 884, 896, 1028, 1886
BsuTUI	ATCGAT	1 cut(s)	1149
BtgI	CCRYGG	1 cut(s)	885
BtsCI	GGATG	9 cut(s)	72, 134, 293, 519, 525, 941, 1419, 1603, 1751
BtsI	GCAGTG	3 cut(s)	20, 1324, 2004
BtsIMutI	CAGTG	5 cut(s)	20, 21, 897, 1324, 2004
BveI	ACCTGC	2 cut(s)	1052, 1161
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	2 cut(s)	1353, 1563
CfoI	GCGC	7 cut(s)	380, 425, 582, 623, 1184, 1547, 2068
Cfr10I	RCCGGY	1 cut(s)	851
Cfr13I	GGNCC	6 cut(s)	260, 364, 652, 889, 1020, 1026
ClaI	ATCGAT	1 cut(s)	1149
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	1765, 1903
CspCI	CAANNNNNGTGG	4 cut(s)	910, 945, 1654, 1689
CviQI	GTAC	2 cut(s)	1765, 1903
DdeI	CTNAG	5 cut(s)	946, 1422, 1632, 1881, 2090
DinI	GGCGCC	1 cut(s)	622
DpnI	GATC	4 cut(s)	719, 785, 1568, 2095
DpnII	GATC	4 cut(s)	717, 783, 1566, 2093
EaeI	YGGCCR	2 cut(s)	538, 882
EagI	CGGCCG	1 cut(s)	538
Eam1104I	CTCTTC	5 cut(s)	515, 560, 824, 1100, 1307
EarI	CTCTTC	5 cut(s)	515, 560, 824, 1100, 1307
EciI	GGCGGA	4 cut(s)	65, 94, 235, 1514
EclXI	CGGCCG	1 cut(s)	538
Eco105I	TACGTA	2 cut(s)	1659, 1941
Eco130I	CCWWGG	3 cut(s)	220, 885, 1830
Eco147I	AGGCCT	2 cut(s)	563, 1886
Eco24I	GRGCYC	1 cut(s)	861
Eco47I	GGWCC	3 cut(s)	260, 889, 1020
Eco52I	CGGCCG	1 cut(s)	538
Eco81I	CCTNAGG	1 cut(s)	946
Eco88I	CYCGRG	1 cut(s)	644
EcoNI	CCTNNNNNAGG	2 cut(s)	647, 1408
EcoO109I	RGGNCCY	2 cut(s)	652, 1026
EcoRI	GAATTC	1 cut(s)	952
EcoRII	CCWGG	7 cut(s)	25, 678, 864, 891, 1016, 1022, 1448
EcoT14I	CCWWGG	3 cut(s)	220, 885, 1830
EcoT22I	ATGCAT	1 cut(s)	1858
EcoT38I	GRGCYC	1 cut(s)	861
EgeI	GGCGCC	1 cut(s)	622
EheI	GGCGCC	1 cut(s)	622
ErhI	CCWWGG	3 cut(s)	220, 885, 1830
Esp3I	CGTCTC	1 cut(s)	219
FaqI	GGGAC	6 cut(s)	246, 368, 652, 712, 1078, 1812
FauI	CCCGC	3 cut(s)	394, 677, 743
FbaI	TGATCA	2 cut(s)	717, 1566
FblI	GTMKAC	3 cut(s)	705, 1661, 1943
Fnu4HI	GCNGC	9 cut(s)	114, 117, 120, 237, 240, 541, 1111, 1523, 1586
FokI	GGATG	9 cut(s)	59, 121, 280, 506, 512, 928, 1426, 1610, 1738
FriOI	GRGCYC	1 cut(s)	861
Fsp4HI	GCNGC	9 cut(s)	114, 117, 120, 237, 240, 541, 1111, 1523, 1586
FspBI	CTAG	1 cut(s)	2046
GlaI	GCGC	7 cut(s)	379, 424, 581, 622, 1183, 1546, 2067
GluI	GCNGC	9 cut(s)	114, 117, 120, 237, 240, 541, 1111, 1523, 1586
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	2016
HaeII	RGCGCY	3 cut(s)	381, 583, 624
HaeIII	GGCC	9 cut(s)	97, 365, 540, 563, 653, 884, 896, 1028, 1886
HapII	CCGG	3 cut(s)	852, 957, 1436
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	7 cut(s)	380, 425, 582, 623, 1184, 1547, 2068
Hin1I	GRCGYC	2 cut(s)	217, 621
Hin6I	GCGC	7 cut(s)	378, 423, 580, 621, 1182, 1545, 2066
HinP1I	GCGC	7 cut(s)	378, 423, 580, 621, 1182, 1545, 2066
HincII	GTYRAC	2 cut(s)	1067, 1675
HindII	GTYRAC	2 cut(s)	1067, 1675
HinfI	GANTC	6 cut(s)	178, 305, 752, 788, 1082, 1428
HpaII	CCGG	3 cut(s)	852, 957, 1436
HphI	GGTGA	4 cut(s)	262, 724, 1438, 1874
Hpy166II	GTNNAC	6 cut(s)	706, 1067, 1640, 1662, 1675, 1944
Hpy188I	TCNGA	7 cut(s)	139, 298, 547, 697, 793, 1423, 2093
Hpy188III	TCNNGA	5 cut(s)	646, 1354, 1385, 1564, 2033
Hpy8I	GTNNAC	6 cut(s)	706, 1067, 1640, 1662, 1675, 1944
Hpy99I	CGWCG	3 cut(s)	219, 352, 467
HpyAV	CCTTC	8 cut(s)	54, 283, 574, 643, 887, 995, 1866, 1903
HpyCH4III	ACNGT	3 cut(s)	686, 1444, 2061
HpyCH4IV	ACGT	2 cut(s)	1658, 1940
HpyF3I	CTNAG	5 cut(s)	946, 1422, 1632, 1881, 2090
HpySE526I	ACGT	2 cut(s)	1658, 1940
Hsp92I	GRCGYC	2 cut(s)	217, 621
HspAI	GCGC	7 cut(s)	378, 423, 580, 621, 1182, 1545, 2066
KasI	GGCGCC	1 cut(s)	620
KroI	GCCGGC	1 cut(s)	851
KroNI	GCCGGC	1 cut(s)	853
Ksp22I	TGATCA	2 cut(s)	717, 1566
Kzo9I	GATC	4 cut(s)	717, 783, 1566, 2093
LguI	GCTCTTC	4 cut(s)	560, 824, 1100, 1307
LmnI	GCTCC	6 cut(s)	480, 548, 698, 743, 1504, 1582
Lsp1109I	GCAGC	5 cut(s)	106, 125, 223, 1534, 1597
LweI	GCATC	5 cut(s)	1066, 1141, 1404, 1614, 1696
MaeI	CTAG	1 cut(s)	2046
MaeII	ACGT	2 cut(s)	1658, 1940
MaeIII	GTNAC	6 cut(s)	124, 686, 1444, 1654, 1936, 2055
MalI	GATC	4 cut(s)	719, 785, 1568, 2095
MbiI	CCGCTC	3 cut(s)	543, 738, 1110
MboI	GATC	4 cut(s)	717, 783, 1566, 2093
MfeI	CAATTG	1 cut(s)	1378
MflI	RGATCY	1 cut(s)	2093
MhlI	GDGCHC	4 cut(s)	631, 861, 1131, 1540
MlsI	TGGCCA	1 cut(s)	884
MluNI	TGGCCA	1 cut(s)	884
Mly113I	GGCGCC	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	2 cut(s)	720, 765
Mox20I	TGGCCA	1 cut(s)	884
Mph1103I	ATGCAT	1 cut(s)	1858
MroNI	GCCGGC	1 cut(s)	851
MroXI	GAANNNNTTC	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	884
MseI	TTAA	4 cut(s)	1775, 1779, 1817, 1847
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	884
MspA1I	CMGCKG	2 cut(s)	119, 361
MspI	CCGG	3 cut(s)	852, 957, 1436
MspR9I	CCNGG	8 cut(s)	27, 680, 866, 893, 1018, 1024, 1436, 1450
MunI	CAATTG	1 cut(s)	1378
MvaI	CCWGG	7 cut(s)	27, 680, 866, 893, 1018, 1024, 1450
MvnI	CGCG	1 cut(s)	1266
NaeI	GCCGGC	1 cut(s)	853
NarI	GGCGCC	1 cut(s)	621
NciI	CCSGG	1 cut(s)	1436
NcoI	CCATGG	1 cut(s)	885
NdeII	GATC	4 cut(s)	717, 783, 1566, 2093
NgoMIV	GCCGGC	1 cut(s)	851
NlaIV	GGNNCC	5 cut(s)	262, 476, 622, 694, 1992
NmeAIII	GCCGAG	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	1444
NsiI	ATGCAT	1 cut(s)	1858
NspI	RCATGY	1 cut(s)	676
PacI	TTAATTAA	1 cut(s)	1779
PaeI	GCATGC	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	644
PagI	TCATGA	2 cut(s)	1353, 1563
PaqCI	CACCTGC	1 cut(s)	1161
PceI	AGGCCT	2 cut(s)	563, 1886
PciSI	GCTCTTC	4 cut(s)	560, 824, 1100, 1307
PcsI	WCGNNNNNNNCGW	2 cut(s)	543, 642
PdiI	GCCGGC	1 cut(s)	853
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	5 cut(s)	178, 305, 752, 1082, 1428
PflFI	GACNNNGTC	2 cut(s)	701, 1442
PkrI	GCNGC	9 cut(s)	115, 118, 121, 238, 241, 542, 1112, 1524, 1587
PleI	GAGTC	1 cut(s)	796
PluTI	GGCGCC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	796
Ppu21I	YACGTR	2 cut(s)	1659, 1941
PshAI	GACNNNNGTC	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	1779
PsiI	TTATAA	1 cut(s)	1986
Psp6I	CCWGG	7 cut(s)	25, 678, 864, 891, 1016, 1022, 1448
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	7 cut(s)	25, 678, 864, 891, 1016, 1022, 1448
PspN4I	GGNNCC	5 cut(s)	262, 476, 622, 694, 1992
PspPI	GGNCC	6 cut(s)	260, 364, 652, 889, 1020, 1026
PstI	CTGCAG	1 cut(s)	1741
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	2093
PsyI	GACNNNGTC	2 cut(s)	701, 1442
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	2 cut(s)	1766, 1904
RsaNI	GTAC	2 cut(s)	1765, 1903
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	4 cut(s)	560, 824, 1100, 1307
SaqAI	TTAA	4 cut(s)	1775, 1779, 1817, 1847
SatI	GCNGC	9 cut(s)	114, 117, 120, 237, 240, 541, 1111, 1523, 1586
Sau3AI	GATC	4 cut(s)	717, 783, 1566, 2093
Sau96I	GGNCC	6 cut(s)	260, 364, 652, 889, 1020, 1026
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	8 cut(s)	27, 680, 866, 893, 1018, 1024, 1436, 1450
SduI	GDGCHC	4 cut(s)	631, 861, 1131, 1540
SfaNI	GCATC	5 cut(s)	1066, 1141, 1404, 1614, 1696
SfcI	CTRYAG	3 cut(s)	709, 775, 1737
SfoI	GGCGCC	1 cut(s)	622
Sfr274I	CTCGAG	1 cut(s)	644
SinI	GGWCC	3 cut(s)	260, 889, 1020
SlaI	CTCGAG	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	644, 767
SmoI	CTYRAG	2 cut(s)	644, 767
SnaBI	TACGTA	2 cut(s)	1659, 1941
SphI	GCATGC	1 cut(s)	676
SseBI	AGGCCT	2 cut(s)	563, 1886
SspDI	GGCGCC	1 cut(s)	620
SspMI	CTAG	1 cut(s)	2046
StuI	AGGCCT	2 cut(s)	563, 1886
StyD4I	CCNGG	8 cut(s)	25, 678, 864, 891, 1016, 1022, 1434, 1448
StyI	CCWWGG	3 cut(s)	220, 885, 1830
TaaI	ACNGT	3 cut(s)	686, 1444, 2061
TaiI	ACGT	2 cut(s)	1661, 1943
TaqI	TCGA	9 cut(s)	32, 209, 342, 558, 645, 786, 987, 1149, 1431
TaqII	GACCGA	1 cut(s)	248
TatI	WGTACW	2 cut(s)	1764, 1902
TauI	GCSGC	4 cut(s)	119, 242, 543, 1113
TfiI	GAWTC	5 cut(s)	178, 305, 752, 1082, 1428
Tru1I	TTAA	4 cut(s)	1775, 1779, 1817, 1847
Tru9I	TTAA	4 cut(s)	1775, 1779, 1817, 1847
TscAI	CASTG	5 cut(s)	21, 27, 904, 1324, 2004
TseFI	GTSAC	1 cut(s)	1444
TseI	GCWGC	5 cut(s)	113, 119, 236, 1522, 1585
Tsp45I	GTSAC	1 cut(s)	1444
TspGWI	ACGGA	2 cut(s)	365, 1958
TspRI	CASTG	5 cut(s)	21, 27, 904, 1324, 2004
Tth111I	GACNNNGTC	2 cut(s)	701, 1442
VpaK11BI	GGWCC	3 cut(s)	260, 889, 1020
VspI	ATTAAT	1 cut(s)	1779
XagI	CCTNNNNNAGG	2 cut(s)	647, 1408
XapI	RAATTY	2 cut(s)	952, 1979
XceI	RCATGY	1 cut(s)	676
XhoI	CTCGAG	1 cut(s)	644
XmiI	GTMKAC	3 cut(s)	705, 1661, 1943
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	1 cut(s)	2046
Zsp2I	ATGCAT	1 cut(s)	1858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.