Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Forward (+)

63126131 .. 63130087

Gene Structure 3957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG455600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGCTTCTTCTGCCTCTGCCTGGTTCCACCCGATTCCCATCCGTTCAATTATCTTCGTCGCCGATACTCATCCGCCACCACCACATCTTCCACGCGCCTCCCTCCGCCGTTTCCACTTCCGCCGAATCTCATCTCCCCCCAATTTCATCCTCACGACGTCGTTTGGATAACTACGACACCCACCAGGCCGCCGTTTCCCGCTACGACTTCGCACCCCTCCTCGCCTTCCTCTCCACCTCGTCCAGCTCCACTCATGACGACATTGACTCGGCGTCGCCGACGTCACTCGACCCGGCCGAGTTCCAGCTGGCCGAGTCGTACCGGGCCGTCCCGGCCCCTCTCTGGCACTCCCTCCTCAAATCCCTCTGCTCCTCCTCCTCCTCCTCCTTGAAACAGGCCTACGCGCTCGTTTCGTGGCTCCAGAAGCACAACCTCTGCTTCTCCTATGAGCTCCTCTACTCCATCCTCATCCACGCGCTCGGACGCTCCGAGAAGCTCTACGAGGCGTTCCTGCTCTCTCAGCGGCAGACGTTGACTCCGTTGACCTACAACGCTCTCATCGGCGCGTGCGCTCGCAACGGCGACCTGGAGAAGGCGCTCAATTTGATGTCCAGGATGCGCCAGGACGGTTACCGATCGGATTTCGTGAATTACAGCCTGGTAATTCAGTCGCTTAATCGCTCAAACAAGGTTGATTCTCCGATTATGTTAAAGCTTTACAGGGAGATTGAGTCTGAGAATGTTGAGATTGATGGACAGCTGCTAAATGATTTGATTGTTGGTTTCGCAAAAGCCGGCGAGCCCAGCCAGGCTATTCATTTTCTTGCCATGGTGCAGGCTAGTGGTTTGAGCCCCAAAACCGCCTCTCTGGTGGCGGTTATTTCGGCTTTGGGGAACTCCGGTAGGGTGGTTGAGGCGGAAGCTATTTTCGAGGAAATGAAAGAGGGTGGGTTGCAACCAAGGACTAGAGCTTACAATGCACTGCTTAAAGGGTATGTGAAGGCAGCTTCTTTGGAAGATGCTGAATCCATTGTGTCACAGATGGAGAGGAGTGGCATTTCACCGGATGAGCACACTTATAGCCTCCTCATTGATGCTTATGCCAATGCCGGTAGGTGGGAGAGCGCGAGAATTGTGTTGAAGGAGATGGAGGCTAGCAATGTGCAGCCTAATTCGTATGTTTTCAGTAGGATTTTAGCTAGTTATCGGGATAGAGGGGAGTGGCAGAAGTCATTTCAAGTTTTGAGGGAGATGAGGAGCAGTGGGGTAATGCCTGATAGGCATTTTTACAATGTGATGATTGATACTTTTGGAAAGTCTAATTGTCTTGATCATGCTATGGCTACCTTTGAAAGGATGCTATCGGAGGGGATTCAGCCGGATACTGTTACCTGGAATACCCTCATAGATAGTCATTGTAAGTCAGGCCACCATGTAAGGGCAGAGGAGTTGTTTGAGGAAATGCAGGAGAGTGGTTGCGCGCCTTGTGCCACCACCTTTAACATCATGATAAACTCCTTAGGGGAGCAGGAGAGATGGGATGAAGTGAAGGGCCTAATGGGGAAGATGCAGAGTCAGGGTTTACTTCCGAATATAGTTACTTATACCACATTAGTTGACATATATGGGAAGTCGGGGAGATTTAATGATGCAATAGAGTGCTTGGAGATAATGAAGTCTGCAGGCATGAAACCATCCCCGACAATGTATAATGCCTTGATTAATGCCTATGCTCAAAGGGGTTTGTCTGAGCAAGCACTGAATGCATTCAGGGTTATGAGATCAGACGGCTTGAAACCTAGTCTATTAGCTCTCAATTCATTAATTAATGCATTTGGCGAAGATAGGAGGGATGCTGAGGCCTTTTCCGTGTTGCAGTACATGAAGGACAATGTAAGTTATTTATGCTGCTGTTCACCGTTAAAAATACTGCATACAGTGGTACAATTGATCTTTCCATGTTACCACCTTCACTATTATTCTTATAACTGCAGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

666

Amino Acids

74.35

Weight (kDa)

6.15

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	172 - 272	4.8e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	182 - 225	1.1e-07	PPR repeat family
PPR	PF01535	182 - 210	4.2e-08	PPR repeat
PPR_long	PF17177	229 - 372	1.8e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	309 - 369	2.7e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	322 - 369	5.9e-13	PPR repeat family
TPR_24	PF23276	342 - 452	3.3e-11	Fungal tetratrico peptide repeats
PPR_long	PF17177	344 - 427	5.9e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	352 - 384	4.1e-06	PPR repeat
PPR_3	PF13812	379 - 439	2.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	425 - 464	8.7e-07	PPR repeat family
PPR_long	PF17177	431 - 585	5.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	451 - 509	3.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	457 - 489	1e-11	PPR repeat
PPR_2	PF13041	460 - 507	3.1e-16	PPR repeat family
PPR	PF01535	463 - 493	2.6e-10	PPR repeat
PPR_2	PF13041	495 - 540	1.6e-09	PPR repeat family
PPR_3	PF13812	520 - 579	1.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	527 - 559	1.6e-07	PPR repeat
PPR_2	PF13041	530 - 566	6.8e-08	PPR repeat family
PPR	PF01535	533 - 562	4.7e-06	PPR repeat
PPR_3	PF13812	562 - 614	2.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	568 - 612	1.1e-07	PPR repeat family
PPR	PF01535	569 - 598	8.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1986
AatII	GACGTC	2 cut(s)	160, 284
AccII	CGCG	6 cut(s)	95, 404, 476, 566, 1127, 1481
AciI	CCGC	9 cut(s)	73, 105, 120, 189, 199, 523, 861, 875, 917
AcoI	YGGCCR	2 cut(s)	294, 309
AcyI	GRCGYC	3 cut(s)	157, 272, 281
AfaI	GTAC	3 cut(s)	320, 1880, 1944
AfiI	CCNNNNNNNGG	6 cut(s)	20, 342, 592, 1116, 1353, 1438
AgsI	TTSAA	6 cut(s)	47, 391, 1141, 1238, 1352, 1795
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	8 cut(s)	19, 183, 585, 611, 621, 657, 807, 1391
Alw21I	GWGCWC	2 cut(s)	453, 1074
AoxI	GGCC	9 cut(s)	186, 294, 309, 324, 333, 396, 1426, 1552, 1860
ApeKI	GCWGC	4 cut(s)	760, 1004, 1165, 1908
AseI	ATTAAT	3 cut(s)	1722, 1823, 1827
Asp700I	GAANNNNTTC	1 cut(s)	1766
AspS9I	GGNCC	3 cut(s)	324, 334, 1552
AsuC2I	CCSGG	3 cut(s)	293, 323, 332
AsuHPI	GGTGA	2 cut(s)	1053, 1908
AsuNHI	GCTAGC	1 cut(s)	1154
AxyI	CCTNAGG	1 cut(s)	1519
BanII	GRGCYC	3 cut(s)	453, 804, 854
Bbv12I	GWGCWC	2 cut(s)	453, 1074
BbvCI	CCTCAGC	1 cut(s)	1857
BbvI	GCAGC	4 cut(s)	747, 1016, 1177, 1895
BccI	CCATC	7 cut(s)	46, 470, 746, 1036, 1141, 1530, 1702
BceAI	ACGGC	5 cut(s)	92, 176, 311, 595, 1804
BciT130I	CCWGG	8 cut(s)	21, 185, 587, 613, 623, 659, 809, 1393
BciVI	GTATCC	1 cut(s)	1375
BclI	TGATCA	1 cut(s)	1330
BcnI	CCSGG	3 cut(s)	293, 323, 332
BfaI	CTAG	5 cut(s)	840, 966, 1155, 1200, 1800
BfmI	CTRYAG	2 cut(s)	1680, 1990
BfoI	RGCGCY	1 cut(s)	599
BfuI	GTATCC	1 cut(s)	1375
BglI	GCCNNNNNGGC	2 cut(s)	332, 1279
BisI	GCNGC	6 cut(s)	189, 524, 761, 1005, 1166, 1909
BlsI	GCNGC	6 cut(s)	190, 525, 762, 1006, 1167, 1910
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	324, 334, 1552
BmiI	GGNNCC	3 cut(s)	25, 336, 419
BmsI	GCATC	7 cut(s)	606, 1009, 1084, 1347, 1557, 1639, 1843
BmtI	GCTAGC	1 cut(s)	1158
BpmI	CTGGAG	2 cut(s)	404, 608
Bpu10I	CCTNAGC	1 cut(s)	1857
BpuMI	CCSGG	3 cut(s)	293, 323, 332
BsaBI	GATNNNNATC	2 cut(s)	37, 68
BsaHI	GRCGYC	3 cut(s)	157, 272, 281
BsaJI	CCNNGG	2 cut(s)	828, 959
BsaWI	WCCGGW	2 cut(s)	899, 1063
BsaXI	ACNNNNNCTCC	4 cut(s)	520, 550, 716, 746
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 342, 592, 1116, 1353, 1438
Bse118I	RCCGGY	2 cut(s)	794, 1109
Bse21I	CCTNAGG	1 cut(s)	1519
Bse3DI	GCAATG	1 cut(s)	1165
Bse8I	GATNNNNATC	2 cut(s)	37, 68
BseBI	CCWGG	8 cut(s)	21, 185, 587, 613, 623, 659, 809, 1393
BseDI	CCNNGG	2 cut(s)	828, 959
BseJI	GATNNNNATC	2 cut(s)	37, 68
BseLI	CCNNNNNNNGG	6 cut(s)	20, 342, 592, 1116, 1353, 1438
BseMI	GCAATG	1 cut(s)	1165
BseMII	CTCAG	4 cut(s)	533, 726, 1740, 1848
BsePI	GCGCGC	1 cut(s)	1479
BseX3I	CGGCCG	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	747, 1016, 1177, 1895
BseYI	CCCAGC	1 cut(s)	803
BsgI	GTGCAG	2 cut(s)	854, 1184
Bsh1236I	CGCG	6 cut(s)	95, 404, 476, 566, 1127, 1481
Bsh1285I	CGRYCG	2 cut(s)	297, 638
BshFI	GGCC	9 cut(s)	188, 296, 311, 326, 335, 398, 1428, 1554, 1862
BsiEI	CGRYCG	2 cut(s)	297, 638
BsiHKAI	GWGCWC	2 cut(s)	453, 1074
BsiSI	CCGG	8 cut(s)	293, 322, 332, 795, 900, 1064, 1110, 1379
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	6 cut(s)	20, 342, 592, 1116, 1353, 1438
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	2 cut(s)	1766, 1768
BsnI	GGCC	9 cut(s)	188, 296, 311, 326, 335, 398, 1428, 1554, 1862
Bsp1286I	GDGCHC	4 cut(s)	453, 804, 854, 1074
Bsp143I	GATC	4 cut(s)	635, 1330, 1781, 1950
Bsp19I	CCATGG	1 cut(s)	828
BspACI	CCGC	9 cut(s)	73, 105, 120, 189, 199, 523, 861, 875, 917
BspANI	GGCC	9 cut(s)	188, 296, 311, 326, 335, 398, 1428, 1554, 1862
BspCNI	CTCAG	4 cut(s)	532, 727, 1741, 1849
BspFNI	CGCG	6 cut(s)	95, 404, 476, 566, 1127, 1481
BspHI	TCATGA	2 cut(s)	253, 1506
BspLI	GGNNCC	3 cut(s)	25, 336, 419
BspMAI	CTGCAG	2 cut(s)	1684, 1994
BspOI	GCTAGC	1 cut(s)	1158
BsrDI	GCAATG	1 cut(s)	1165
BsrFI	RCCGGY	2 cut(s)	794, 1109
BssAI	RCCGGY	2 cut(s)	794, 1109
BssECI	CCNNGG	2 cut(s)	828, 959
BssHII	GCGCGC	1 cut(s)	1479
BssMI	GATC	4 cut(s)	635, 1330, 1781, 1950
BssNI	GRCGYC	3 cut(s)	157, 272, 281
BssT1I	CCWWGG	2 cut(s)	828, 959
Bst2UI	CCWGG	8 cut(s)	21, 185, 587, 613, 623, 659, 809, 1393
Bst4CI	ACNGT	4 cut(s)	629, 1387, 1920, 1939
BstACI	GRCGYC	3 cut(s)	157, 272, 281
BstAPI	GCANNNNNTGC	1 cut(s)	1763
BstDEI	CTNAG	5 cut(s)	519, 735, 1519, 1749, 1857
BstDSI	CCRYGG	1 cut(s)	828
BstEII	GGTNACC	1 cut(s)	629
BstENI	CCTNNNNNAGG	2 cut(s)	590, 1351
BstFNI	CGCG	6 cut(s)	95, 404, 476, 566, 1127, 1481
BstH2I	RGCGCY	1 cut(s)	599
BstKTI	GATC	4 cut(s)	638, 1333, 1784, 1953
BstMBI	GATC	4 cut(s)	635, 1330, 1781, 1950
BstMCI	CGRYCG	2 cut(s)	297, 638
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 332, 424, 520, 804, 977, 1279, 1487, 1763
BstNI	CCWGG	8 cut(s)	21, 185, 587, 613, 623, 659, 809, 1393
BstPI	GGTNACC	1 cut(s)	629
BstSFI	CTRYAG	2 cut(s)	1680, 1990
BstUI	CGCG	6 cut(s)	95, 404, 476, 566, 1127, 1481
BstV1I	GCAGC	4 cut(s)	747, 1016, 1177, 1895
BstZI	CGGCCG	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	1519
BsuI	GTATCC	1 cut(s)	1375
BsuRI	GGCC	9 cut(s)	188, 296, 311, 326, 335, 398, 1428, 1554, 1862
BtgI	CCRYGG	1 cut(s)	828
BtsI	GCAGTG	2 cut(s)	980, 1267
BtsIMutI	CAGTG	4 cut(s)	980, 1267, 1757, 1944
CciI	TCATGA	2 cut(s)	253, 1506
Cfr10I	RCCGGY	2 cut(s)	794, 1109
Cfr13I	GGNCC	3 cut(s)	324, 334, 1552
CseI	GACGC	2 cut(s)	261, 492
Csp6I	GTAC	3 cut(s)	319, 1879, 1943
CspCI	CAANNNNNGTGG	2 cut(s)	1597, 1632
CviAII	CATG	8 cut(s)	254, 829, 1334, 1433, 1507, 1687, 1882, 1959
CviQI	GTAC	3 cut(s)	319, 1879, 1943
DdeI	CTNAG	5 cut(s)	519, 735, 1519, 1749, 1857
DpnI	GATC	4 cut(s)	637, 1332, 1783, 1952
DpnII	GATC	4 cut(s)	635, 1330, 1781, 1950
DriI	GACNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	2 cut(s)	294, 309
EagI	CGGCCG	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EciI	GGCGGA	4 cut(s)	62, 94, 109, 932
Ecl136II	GAGCTC	1 cut(s)	451
EclXI	CGGCCG	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	828, 959
Eco147I	AGGCCT	2 cut(s)	398, 1862
Eco24I	GRGCYC	3 cut(s)	453, 804, 854
Eco52I	CGGCCG	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	451
Eco81I	CCTNAGG	1 cut(s)	1519
Eco91I	GGTNACC	1 cut(s)	629
EcoICRI	GAGCTC	1 cut(s)	451
EcoNI	CCTNNNNNAGG	2 cut(s)	590, 1351
EcoO109I	RGGNCCY	1 cut(s)	1552
EcoO65I	GGTNACC	1 cut(s)	629
EcoRII	CCWGG	8 cut(s)	19, 183, 585, 611, 621, 657, 807, 1391
EcoT14I	CCWWGG	2 cut(s)	828, 959
EcoT22I	ATGCAT	2 cut(s)	1768, 1834
EcoT38I	GRGCYC	3 cut(s)	453, 804, 854
ErhI	CCWWGG	2 cut(s)	828, 959
FaeI	CATG	8 cut(s)	257, 832, 1337, 1436, 1510, 1690, 1885, 1962
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	8 cut(s)	253, 828, 1333, 1432, 1506, 1686, 1881, 1958
FauI	CCCGC	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	1330
Fnu4HI	GCNGC	6 cut(s)	189, 524, 761, 1005, 1166, 1909
FriOI	GRGCYC	3 cut(s)	453, 804, 854
Fsp4HI	GCNGC	6 cut(s)	189, 524, 761, 1005, 1166, 1909
FspBI	CTAG	5 cut(s)	840, 966, 1155, 1200, 1800
GluI	GCNGC	6 cut(s)	189, 524, 761, 1005, 1166, 1909
GsaI	CCCAGC	1 cut(s)	807
GsuI	CTGGAG	2 cut(s)	404, 608
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	9 cut(s)	188, 296, 311, 326, 335, 398, 1428, 1554, 1862
HapII	CCGG	8 cut(s)	293, 322, 332, 795, 900, 1064, 1110, 1379
HgaI	GACGC	2 cut(s)	261, 492
Hin1I	GRCGYC	3 cut(s)	157, 272, 281
Hin1II	CATG	8 cut(s)	257, 832, 1337, 1436, 1510, 1690, 1885, 1962
HincII	GTYRAC	3 cut(s)	534, 543, 1618
HindII	GTYRAC	3 cut(s)	534, 543, 1618
HindIII	AAGCTT	1 cut(s)	713
HpaII	CCGG	8 cut(s)	293, 322, 332, 795, 900, 1064, 1110, 1379
HphI	GGTGA	2 cut(s)	1053, 1908
Hpy166II	GTNNAC	5 cut(s)	534, 543, 1583, 1618, 1916
Hpy188I	TCNGA	9 cut(s)	482, 490, 640, 702, 736, 1366, 1590, 1750, 1786
Hpy188III	TCNNGA	7 cut(s)	153, 254, 421, 646, 1208, 1328, 1507
Hpy8I	GTNNAC	5 cut(s)	534, 543, 1583, 1618, 1916
Hpy99I	CGWCG	5 cut(s)	61, 159, 162, 277, 283
HpyAV	CCTTC	7 cut(s)	235, 586, 994, 1135, 1543, 1879, 1979
HpyCH4III	ACNGT	4 cut(s)	629, 1387, 1920, 1939
HpyCH4IV	ACGT	3 cut(s)	157, 281, 530
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 332, 424, 520, 804, 977, 1279, 1487, 1763
HpyF3I	CTNAG	5 cut(s)	519, 735, 1519, 1749, 1857
HpySE526I	ACGT	3 cut(s)	157, 281, 530
Hsp92I	GRCGYC	3 cut(s)	157, 272, 281
Hsp92II	CATG	8 cut(s)	257, 832, 1337, 1436, 1510, 1690, 1885, 1962
KroI	GCCGGC	1 cut(s)	794
KroNI	GCCGGC	1 cut(s)	796
Ksp22I	TGATCA	1 cut(s)	1330
Kzo9I	GATC	4 cut(s)	635, 1330, 1781, 1950
LmnI	GCTCC	7 cut(s)	251, 374, 423, 456, 491, 1257, 1525
Lsp1109I	GCAGC	4 cut(s)	747, 1016, 1177, 1895
LweI	GCATC	7 cut(s)	606, 1009, 1084, 1347, 1557, 1639, 1843
MaeI	CTAG	5 cut(s)	840, 966, 1155, 1200, 1800
MaeII	ACGT	3 cut(s)	157, 281, 530
MaeIII	GTNAC	6 cut(s)	282, 629, 1035, 1387, 1597, 1961
MalI	GATC	4 cut(s)	637, 1332, 1783, 1952
MboI	GATC	4 cut(s)	635, 1330, 1781, 1950
MboII	GAAGA	5 cut(s)	45, 79, 1028, 1576, 1853
MfeI	CAATTG	1 cut(s)	1946
MhlI	GDGCHC	4 cut(s)	453, 804, 854, 1074
MlyI	GAGTC	5 cut(s)	260, 323, 529, 740, 1582
Mph1103I	ATGCAT	2 cut(s)	1768, 1834
MroNI	GCCGGC	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	1766
MseI	TTAA	9 cut(s)	675, 710, 987, 1500, 1644, 1722, 1823, 1827, 1922
MspA1I	CMGCKG	3 cut(s)	307, 523, 760
MspI	CCGG	8 cut(s)	293, 322, 332, 795, 900, 1064, 1110, 1379
MunI	CAATTG	1 cut(s)	1946
Mva1269I	GAATGC	2 cut(s)	1766, 1768
MvaI	CCWGG	8 cut(s)	21, 185, 587, 613, 623, 659, 809, 1393
MvnI	CGCG	6 cut(s)	95, 404, 476, 566, 1127, 1481
MwoI	GCNNNNNNNGC	9 cut(s)	10, 332, 424, 520, 804, 977, 1279, 1487, 1763
NaeI	GCCGGC	1 cut(s)	796
NciI	CCSGG	3 cut(s)	293, 323, 332
NcoI	CCATGG	1 cut(s)	828
NdeII	GATC	4 cut(s)	635, 1330, 1781, 1950
NgoMIV	GCCGGC	1 cut(s)	794
NheI	GCTAGC	1 cut(s)	1154
NlaIII	CATG	8 cut(s)	257, 832, 1337, 1436, 1510, 1690, 1885, 1962
NlaIV	GGNNCC	3 cut(s)	25, 336, 419
NmeAIII	GCCGAG	3 cut(s)	248, 322, 337
NmuCI	GTSAC	2 cut(s)	282, 1035
NsiI	ATGCAT	2 cut(s)	1768, 1834
PacI	TTAATTAA	1 cut(s)	1827
PagI	TCATGA	2 cut(s)	253, 1506
PauI	GCGCGC	1 cut(s)	1479
PceI	AGGCCT	2 cut(s)	398, 1862
PcsI	WCGNNNNNNNCGW	4 cut(s)	275, 294, 486, 536
PctI	GAATGC	2 cut(s)	1766, 1768
PdiI	GCCGGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	1766
PfeI	GAWTC	5 cut(s)	33, 125, 695, 1025, 1372
PfoI	TCCNGGA	1 cut(s)	611
PkrI	GCNGC	6 cut(s)	190, 525, 762, 1006, 1167, 1910
Ple19I	CGATCG	1 cut(s)	638
PleI	GAGTC	5 cut(s)	260, 322, 529, 739, 1581
PpsI	GAGTC	5 cut(s)	260, 322, 529, 739, 1581
PshBI	ATTAAT	3 cut(s)	1722, 1823, 1827
PsiI	TTATAA	1 cut(s)	1986
Psp124BI	GAGCTC	1 cut(s)	453
Psp6I	CCWGG	8 cut(s)	19, 183, 585, 611, 621, 657, 807, 1391
PspEI	GGTNACC	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	8 cut(s)	19, 183, 585, 611, 621, 657, 807, 1391
PspN4I	GGNNCC	3 cut(s)	25, 336, 419
PspPI	GGNCC	3 cut(s)	324, 334, 1552
PstI	CTGCAG	2 cut(s)	1684, 1994
PteI	GCGCGC	1 cut(s)	1479
PvuI	CGATCG	1 cut(s)	638
PvuII	CAGCTG	2 cut(s)	307, 760
RsaI	GTAC	3 cut(s)	320, 1880, 1944
RsaNI	GTAC	3 cut(s)	319, 1879, 1943
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	9 cut(s)	675, 710, 987, 1500, 1644, 1722, 1823, 1827, 1922
SatI	GCNGC	6 cut(s)	189, 524, 761, 1005, 1166, 1909
Sau3AI	GATC	4 cut(s)	635, 1330, 1781, 1950
Sau96I	GGNCC	3 cut(s)	324, 334, 1552
SchI	GAGTC	5 cut(s)	260, 323, 529, 740, 1582
SduI	GDGCHC	4 cut(s)	453, 804, 854, 1074
SfaNI	GCATC	7 cut(s)	606, 1009, 1084, 1347, 1557, 1639, 1843
SfcI	CTRYAG	2 cut(s)	1680, 1990
SfiI	GGCCNNNNNGGCC	1 cut(s)	332
SseBI	AGGCCT	2 cut(s)	398, 1862
SsiI	CCGC	9 cut(s)	73, 105, 120, 189, 199, 523, 861, 875, 917
SspMI	CTAG	5 cut(s)	840, 966, 1155, 1200, 1800
SstI	GAGCTC	1 cut(s)	453
StuI	AGGCCT	2 cut(s)	398, 1862
StyI	CCWWGG	2 cut(s)	828, 959
TaaI	ACNGT	4 cut(s)	629, 1387, 1920, 1939
TaiI	ACGT	3 cut(s)	160, 284, 533
TaqI	TCGA	2 cut(s)	288, 930
TatI	WGTACW	1 cut(s)	1878
TauI	GCSGC	2 cut(s)	191, 526
TfiI	GAWTC	5 cut(s)	33, 125, 695, 1025, 1372
Tru1I	TTAA	9 cut(s)	675, 710, 987, 1500, 1644, 1722, 1823, 1827, 1922
Tru9I	TTAA	9 cut(s)	675, 710, 987, 1500, 1644, 1722, 1823, 1827, 1922
TscAI	CASTG	4 cut(s)	987, 1267, 1764, 1944
TseFI	GTSAC	2 cut(s)	282, 1035
TseI	GCWGC	4 cut(s)	760, 1004, 1165, 1908
Tsp45I	GTSAC	2 cut(s)	282, 1035
TspDTI	ATGAA	8 cut(s)	135, 806, 953, 1557, 1688, 1703, 1809, 1898
TspGWI	ACGGA	3 cut(s)	31, 528, 1858
TspRI	CASTG	4 cut(s)	987, 1267, 1764, 1944
VspI	ATTAAT	3 cut(s)	1722, 1823, 1827
XagI	CCTNNNNNAGG	2 cut(s)	590, 1351
XmnI	GAANNNNTTC	1 cut(s)	1766
XspI	CTAG	5 cut(s)	840, 966, 1155, 1200, 1800
ZraI	GACGTC	2 cut(s)	158, 282
Zsp2I	ATGCAT	2 cut(s)	1768, 1834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.