Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Reverse (-)

27291056 .. 27295567

Gene Structure 4512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37460.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGCTTCTTCTGCCTCTGCCGGGTTCGACTCGCTTCCCTTCCGTCCAGTTAGCTTCCACGTCTCCCATTCTCATCCGCCACCACCACATCTTCCACGCGCCTCTCTCCGCCACCACCCCCTGCGCCGTCTCCACCTCCGCCGAGTCTCACCTCCCTTCACTTCCACCGTCACGGCGCCGTTTCGACAACTACGACACCGACCAGGCCACCGTTTCCCGCTACGACTTCGCTCCTCTCCTCGCCTTCCTCTCCACCTCCTCCTCCGCTCATGACGTCACCGACTCGGCCTCCCCGACGTCACTCGACCCGGCCGAGTTCCAGCTCGCCGAGTTGTACCGGGCCGTCCCGGCCCCGCTCTGGCACTCCCTCCTCAAGTCGCTCTGCTCCTCGTCGTCGTCGTCCTCCTTGAAACAAGCCTACGCGCTCGTCGCGTGGCTCCAGAAGCACAACCTCTGCTTCTCGTACGAGCTCCTCTACTCCATCCTTATCCACGCGCTCGGACGCTCCGAGAAGCTCTACGAGGCGTTCCTGCTCTCTCAGCGCCGGACGTTGACTCCGTTGACCTACAACGCTCTCATCGGCGCGTGCGCTCGCAACGGCGACCTGGAGAAGGCGCTCAATTTGATGTCCAGGATGCGCCAGGACGGTTACAGGTCGGATTTCGTGAACTACAGCCTGGTGATTCAGTCCCTTAATCGCTCTAACAAGGTTGATTCTCCGATTATGTTGAAGCTTTATAAGGAGATTGAGTCTGAGAATGTTGAAATTGATGGACAGTTGTTGAATGATTTGATTGTTGGTTTCGCAAAAGCCGGTGAGCCTAGCCAGGCCATGCATTTTCTTGCCATGGTGCAGGCTAGTGGTTTGAGCCCGAAAACCGCGACTTTAGTGTCGGTTATTTCGGCTTTGGGGAATGCCGGTAGGGTGGTTGAGGCTGAAGCTATTTTCGAGGAAATGAAGGAGGGTGGGTTGCAACCGAGGACTAGAGCTTACAATGCACTGCTGAAAGGGTATGTGAAGGCAGCTTCTTTGGAAGATGCGGAATCCATTGTGTCGCAGATGGAGAGGAGCGGTATTTCGCCCGATGAGCACACATACAGCCTCCTCATTGATGCTTATGCCAATGCCGGTAGGTGGGAAAGCGCGAGAATTGTGTTGAAGGAGATGGAGGCTAGCAATGTGCAGCCTAATTCTTATGTTTTCAGTAGGATTTTGGCTAGTTATAGGGATAGAGGGGAGTGGCAGAAGTCATTTCAAGTTTTGAGGGAGATGAGAAGTAGTGGGGTAATGCCGGATAGGCATTTTTACAATGTGATGATTGATACGTTTGGAAAGTCTAATTGTCTTGATCATGCTATGGCTACCTTTGAAAGGATGTTATCAGAGGGGATTCAGCCGGATACTGTTACCTGGAATACCCTTATAGATATTCATTGTAAGTCTGGCCACCATGCAAGAGCAGAGGAGTTGTTTGAGGAGATGCAGGAGAGTGGTTGCGCGCCTTGTGCCACCACCTTTAACATCATGATAAACTCCCTAGGGGAGCAGGAGAGATGGGATGAAGTGAAGGGCCTGATGGGGAAGATGCAGAGTCAGGGTTTACTTCCGAATATAGTTACTTATACCACGTTAGTTGACATATATGGGAAGTCAGGGAGATTTAATGATGCAATAGAGTGCTTGGAGATAATGAAGTCTGCAGGCTTGAAACCATCCCCGACTATGTATAATGCCTTGATTAATGCCTATGCTCAAAGAGGTTTGTCTGAGCTAGCACTGAATGCATTCAGGGTTATGAGAGCAGACGGCTTGAAACCTAGTCTGTTAGCTCTCAATTCATTAATTAATGCATTTGGTGAAGATAGGAGGGATGCTGAGGCCTTTTCCGTGTTGCAATACATGAAGGAAAATGATGTAAAACCAGACGTAGTTACGTATACTACCCTTATGAAAGCCCTTATTCGTGTTGATAAATTTTATAAGGTTCCAGATGTTTATGAAGAAATGATTCACTCTAGGGTAACCCCTGATAGGAAAGCTAGGGCAATGTTACGGTCTGCCTTGAAATACATGAAACAGACACTGAAGCATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

699

Amino Acids

77.99

Weight (kDa)

6.67

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	188 - 231	1e-07	PPR repeat family
PPR	PF01535	188 - 216	4.4e-08	PPR repeat
PPR_long	PF17177	237 - 378	2e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	315 - 375	2.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	328 - 375	6.2e-13	PPR repeat family
TPR_24	PF23276	348 - 458	3.5e-11	Fungal tetratrico peptide repeats
PPR_long	PF17177	350 - 433	8.3e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	358 - 390	4.3e-06	PPR repeat
PPR_3	PF13812	385 - 445	2.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	431 - 470	9.2e-07	PPR repeat family
PPR_long	PF17177	437 - 587	7.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	457 - 515	1.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	463 - 495	5.2e-11	PPR repeat
PPR_2	PF13041	466 - 513	2.6e-16	PPR repeat family
PPR	PF01535	469 - 499	1.4e-09	PPR repeat
PPR_2	PF13041	501 - 546	1.9e-09	PPR repeat family
PPR_3	PF13812	526 - 585	9.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	533 - 565	1.7e-07	PPR repeat
PPR_2	PF13041	536 - 572	5.9e-08	PPR repeat family
PPR	PF01535	539 - 569	4e-06	PPR repeat
PPR_3	PF13812	568 - 620	8.7e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	574 - 618	8.8e-07	PPR repeat family
TPR_24	PF23276	579 - 655	4.9e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	607 - 654	7.3e-11	PPR repeat family
PPR_2	PF13041	641 - 678	3.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	738, 1980
AasI	GACNNNNNNGTC	1 cut(s)	889
AatII	GACGTC	2 cut(s)	276, 299
AccB1I	GGYRCC	1 cut(s)	174
AccBSI	CCGCTC	3 cut(s)	266, 355, 1071
AccI	GTMKAC	1 cut(s)	1937
AccII	CGCG	8 cut(s)	98, 422, 431, 494, 584, 881, 1145, 1499
AciI	CCGC	9 cut(s)	76, 108, 138, 217, 264, 353, 879, 1040, 1071
AcoI	YGGCCR	2 cut(s)	309, 1444
AcsI	RAATTY	1 cut(s)	1973
AcuI	CTGAAG	1 cut(s)	957
AcyI	GRCGYC	3 cut(s)	175, 273, 296
AfaI	GTAC	2 cut(s)	335, 464
AfiI	CCNNNNNNNGG	6 cut(s)	20, 357, 610, 1134, 1371, 2031
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	7 cut(s)	201, 603, 629, 639, 675, 825, 1409
Alw21I	GWGCWC	2 cut(s)	471, 1092
Alw26I	GTCTC	3 cut(s)	66, 133, 150
AlwNI	CAGNNNCTG	1 cut(s)	2083
AoxI	GGCC	9 cut(s)	204, 285, 309, 339, 348, 828, 1444, 1570, 1878
ApeKI	GCWGC	2 cut(s)	1022, 1183
ApoI	RAATTY	1 cut(s)	1973
AseI	ATTAAT	3 cut(s)	1740, 1841, 1845
Asp700I	GAANNNNTTC	2 cut(s)	1784, 2007
AspA2I	CCTAGG	1 cut(s)	1537
AspS9I	GGNCC	3 cut(s)	339, 349, 1570
AsuC2I	CCSGG	4 cut(s)	21, 308, 338, 347
AsuHPI	GGTGA	5 cut(s)	140, 268, 691, 827, 1868
AsuNHI	GCTAGC	2 cut(s)	1172, 1771
AvrII	CCTAGG	1 cut(s)	1537
BalI	TGGCCA	1 cut(s)	1446
BanI	GGYRCC	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	471, 872
Bbv12I	GWGCWC	2 cut(s)	471, 1092
BbvCI	CCTCAGC	1 cut(s)	1875
BbvI	GCAGC	2 cut(s)	1034, 1195
BccI	CCATC	7 cut(s)	488, 764, 1054, 1159, 1548, 1570, 1720
BceAI	ACGGC	6 cut(s)	110, 162, 188, 326, 613, 1822
BciT130I	CCWGG	7 cut(s)	203, 605, 631, 641, 677, 827, 1411
BciVI	GTATCC	1 cut(s)	1393
BclI	TGATCA	1 cut(s)	1348
BcnI	CCSGG	4 cut(s)	21, 308, 338, 347
BcoDI	GTCTC	3 cut(s)	66, 133, 150
BfmI	CTRYAG	2 cut(s)	670, 1698
BfoI	RGCGCY	3 cut(s)	178, 544, 617
BfuI	GTATCC	1 cut(s)	1393
BglI	GCCNNNNNGGC	2 cut(s)	347, 1297
BisI	GCNGC	2 cut(s)	1023, 1184
BlnI	CCTAGG	1 cut(s)	1537
BlsI	GCNGC	2 cut(s)	1024, 1185
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	339, 349, 1570
BmiI	GGNNCC	4 cut(s)	176, 351, 437, 1986
BmsI	GCATC	7 cut(s)	624, 1027, 1102, 1470, 1575, 1657, 1861
BmtI	GCTAGC	2 cut(s)	1176, 1775
BpmI	CTGGAG	2 cut(s)	422, 626
Bpu10I	CCTNAGC	1 cut(s)	1875
BpuEI	CTTGAG	1 cut(s)	356
BpuMI	CCSGG	4 cut(s)	21, 308, 338, 347
BsaAI	YACGTR	1 cut(s)	1935
BsaHI	GRCGYC	3 cut(s)	175, 273, 296
BsaJI	CCNNGG	3 cut(s)	846, 977, 1537
BsaXI	ACNNNNNCTCC	8 cut(s)	272, 302, 538, 568, 734, 764, 953, 983
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 357, 610, 1134, 1371, 2031
Bse118I	RCCGGY	3 cut(s)	812, 917, 1127
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	2 cut(s)	1183, 2052
BseBI	CCWGG	7 cut(s)	203, 605, 631, 641, 677, 827, 1411
BseDI	CCNNGG	3 cut(s)	846, 977, 1537
BseGI	GGATG	7 cut(s)	72, 480, 639, 1380, 1564, 1712, 1876
BseLI	CCNNNNNNNGG	6 cut(s)	20, 357, 610, 1134, 1371, 2031
BseMI	GCAATG	2 cut(s)	1183, 2052
BseMII	CTCAG	4 cut(s)	551, 744, 1758, 1866
BseNI	ACTGG	1 cut(s)	46
BsePI	GCGCGC	1 cut(s)	1497
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	1034, 1195
BsgI	GTGCAG	2 cut(s)	872, 1202
Bsh1236I	CGCG	8 cut(s)	98, 422, 431, 494, 584, 881, 1145, 1499
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	9 cut(s)	206, 287, 311, 341, 350, 830, 1446, 1572, 1880
BshNI	GGYRCC	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	471, 1092
BsiWI	CGTACG	1 cut(s)	462
BslFI	GGGAC	2 cut(s)	329, 673
BslI	CCNNNNNNNGG	6 cut(s)	20, 357, 610, 1134, 1371, 2031
BsmAI	GTCTC	3 cut(s)	66, 133, 150
BsmBI	CGTCTC	2 cut(s)	66, 133
BsmFI	GGGAC	2 cut(s)	329, 673
BsmI	GAATGC	3 cut(s)	919, 1784, 1786
BsnI	GGCC	9 cut(s)	206, 287, 311, 341, 350, 830, 1446, 1572, 1880
Bsp1286I	GDGCHC	3 cut(s)	471, 872, 1092
Bsp143I	GATC	1 cut(s)	1348
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	9 cut(s)	76, 108, 138, 217, 264, 353, 879, 1040, 1071
BspANI	GGCC	9 cut(s)	206, 287, 311, 341, 350, 830, 1446, 1572, 1880
BspCNI	CTCAG	4 cut(s)	550, 745, 1759, 1867
BspFNI	CGCG	8 cut(s)	98, 422, 431, 494, 584, 881, 1145, 1499
BspHI	TCATGA	2 cut(s)	268, 1524
BspLI	GGNNCC	4 cut(s)	176, 351, 437, 1986
BspMAI	CTGCAG	1 cut(s)	1702
BspOI	GCTAGC	2 cut(s)	1176, 1775
BspT107I	GGYRCC	1 cut(s)	174
BsrBI	CCGCTC	3 cut(s)	266, 355, 1071
BsrDI	GCAATG	2 cut(s)	1183, 2052
BsrFI	RCCGGY	3 cut(s)	812, 917, 1127
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	3 cut(s)	812, 917, 1127
BssECI	CCNNGG	3 cut(s)	846, 977, 1537
BssHII	GCGCGC	1 cut(s)	1497
BssMI	GATC	1 cut(s)	1348
BssNAI	GTATAC	1 cut(s)	1938
BssNI	GRCGYC	3 cut(s)	175, 273, 296
BssT1I	CCWWGG	2 cut(s)	846, 1537
Bst1107I	GTATAC	1 cut(s)	1938
Bst2UI	CCWGG	7 cut(s)	203, 605, 631, 641, 677, 827, 1411
Bst4CI	ACNGT	6 cut(s)	168, 211, 647, 777, 1405, 2055
BstACI	GRCGYC	3 cut(s)	175, 273, 296
BstAPI	GCANNNNNTGC	1 cut(s)	1781
BstBAI	YACGTR	1 cut(s)	1935
BstC8I	GCNNGC	8 cut(s)	324, 586, 592, 855, 1174, 1499, 1702, 1773
BstDEI	CTNAG	4 cut(s)	537, 753, 1767, 1875
BstDSI	CCRYGG	1 cut(s)	846
BstEII	GGTNACC	1 cut(s)	2020
BstENI	CCTNNNNNAGG	2 cut(s)	608, 1369
BstF5I	GGATG	7 cut(s)	72, 480, 639, 1380, 1564, 1712, 1876
BstFNI	CGCG	8 cut(s)	98, 422, 431, 494, 584, 881, 1145, 1499
BstH2I	RGCGCY	3 cut(s)	178, 544, 617
BstKTI	GATC	1 cut(s)	1351
BstMAI	GTCTC	3 cut(s)	66, 133, 150
BstMBI	GATC	1 cut(s)	1348
BstMCI	CGRYCG	1 cut(s)	312
BstNI	CCWGG	7 cut(s)	203, 605, 631, 641, 677, 827, 1411
BstPI	GGTNACC	1 cut(s)	2020
BstSFI	CTRYAG	2 cut(s)	670, 1698
BstSNI	TACGTA	1 cut(s)	1935
BstUI	CGCG	8 cut(s)	98, 422, 431, 494, 584, 881, 1145, 1499
BstV1I	GCAGC	2 cut(s)	1034, 1195
BstZ17I	GTATAC	1 cut(s)	1938
BstZI	CGGCCG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	1393
BsuRI	GGCC	9 cut(s)	206, 287, 311, 341, 350, 830, 1446, 1572, 1880
BtgI	CCRYGG	1 cut(s)	846
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	7 cut(s)	72, 480, 639, 1380, 1564, 1712, 1876
BtsI	GCAGTG	1 cut(s)	998
BtsIMutI	CAGTG	3 cut(s)	998, 1775, 2081
Cac8I	GCNNGC	8 cut(s)	324, 586, 592, 855, 1174, 1499, 1702, 1773
CaiI	CAGNNNCTG	1 cut(s)	2083
CciI	TCATGA	2 cut(s)	268, 1524
Cfr10I	RCCGGY	3 cut(s)	812, 917, 1127
Cfr13I	GGNCC	3 cut(s)	339, 349, 1570
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	334, 463
CspCI	CAANNNNNGTGG	2 cut(s)	1615, 1650
CviAII	CATG	8 cut(s)	269, 832, 847, 1352, 1451, 1525, 1900, 2071
CviQI	GTAC	2 cut(s)	334, 463
DdeI	CTNAG	4 cut(s)	537, 753, 1767, 1875
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	1 cut(s)	1350
DpnII	GATC	1 cut(s)	1348
DrdI	GACNNNNNNGTC	1 cut(s)	889
DseDI	GACNNNNNNGTC	1 cut(s)	889
EaeI	YGGCCR	2 cut(s)	309, 1444
EagI	CGGCCG	1 cut(s)	309
EciI	GGCGGA	3 cut(s)	65, 97, 127
Ecl136II	GAGCTC	1 cut(s)	469
EclXI	CGGCCG	1 cut(s)	309
Eco105I	TACGTA	1 cut(s)	1935
Eco130I	CCWWGG	2 cut(s)	846, 1537
Eco147I	AGGCCT	1 cut(s)	1880
Eco24I	GRGCYC	2 cut(s)	471, 872
Eco52I	CGGCCG	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	957
Eco91I	GGTNACC	1 cut(s)	2020
EcoICRI	GAGCTC	1 cut(s)	469
EcoNI	CCTNNNNNAGG	2 cut(s)	608, 1369
EcoO109I	RGGNCCY	1 cut(s)	1570
EcoO65I	GGTNACC	1 cut(s)	2020
EcoRII	CCWGG	7 cut(s)	201, 603, 629, 639, 675, 825, 1409
EcoT14I	CCWWGG	2 cut(s)	846, 1537
EcoT22I	ATGCAT	3 cut(s)	837, 1786, 1852
EcoT38I	GRGCYC	2 cut(s)	471, 872
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	846, 1537
Esp3I	CGTCTC	2 cut(s)	66, 133
FaeI	CATG	8 cut(s)	272, 835, 850, 1355, 1454, 1528, 1903, 2074
FaqI	GGGAC	2 cut(s)	329, 673
FatI	CATG	8 cut(s)	268, 831, 846, 1351, 1450, 1524, 1899, 2070
FauI	CCCGC	2 cut(s)	224, 360
FbaI	TGATCA	1 cut(s)	1348
FblI	GTMKAC	1 cut(s)	1937
Fnu4HI	GCNGC	2 cut(s)	1023, 1184
FokI	GGATG	7 cut(s)	59, 467, 646, 1387, 1571, 1699, 1883
FriOI	GRGCYC	2 cut(s)	471, 872
Fsp4HI	GCNGC	2 cut(s)	1023, 1184
GluI	GCNGC	2 cut(s)	1023, 1184
GsuI	CTGGAG	2 cut(s)	422, 626
HaeII	RGCGCY	3 cut(s)	178, 544, 617
HaeIII	GGCC	9 cut(s)	206, 287, 311, 341, 350, 830, 1446, 1572, 1880
HgaI	GACGC	1 cut(s)	510
Hin1I	GRCGYC	3 cut(s)	175, 273, 296
Hin1II	CATG	8 cut(s)	272, 835, 850, 1355, 1454, 1528, 1903, 2074
HincII	GTYRAC	3 cut(s)	552, 561, 1636
HindII	GTYRAC	3 cut(s)	552, 561, 1636
HindIII	AAGCTT	1 cut(s)	731
HphI	GGTGA	5 cut(s)	140, 268, 691, 827, 1868
Hpy166II	GTNNAC	6 cut(s)	552, 561, 667, 1601, 1636, 1938
Hpy188I	TCNGA	8 cut(s)	500, 508, 658, 720, 754, 1384, 1608, 1768
Hpy188III	TCNNGA	6 cut(s)	269, 439, 664, 1346, 1525, 1988
Hpy8I	GTNNAC	6 cut(s)	552, 561, 667, 1601, 1636, 1938
Hpy99I	CGWCG	5 cut(s)	298, 394, 397, 400, 431
HpyAV	CCTTC	9 cut(s)	48, 165, 253, 604, 952, 1012, 1153, 1561, 1897
HpyCH4III	ACNGT	6 cut(s)	168, 211, 647, 777, 1405, 2055
HpyCH4IV	ACGT	8 cut(s)	59, 273, 296, 548, 1325, 1628, 1926, 1934
HpyF3I	CTNAG	4 cut(s)	537, 753, 1767, 1875
HpySE526I	ACGT	8 cut(s)	59, 273, 296, 548, 1325, 1628, 1926, 1934
Hsp92I	GRCGYC	3 cut(s)	175, 273, 296
Hsp92II	CATG	8 cut(s)	272, 835, 850, 1355, 1454, 1528, 1903, 2074
KasI	GGCGCC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	1348
Kzo9I	GATC	1 cut(s)	1348
LmnI	GCTCC	7 cut(s)	235, 389, 441, 474, 509, 1068, 1543
Lsp1109I	GCAGC	2 cut(s)	1034, 1195
LweI	GCATC	7 cut(s)	624, 1027, 1102, 1470, 1575, 1657, 1861
MaeII	ACGT	8 cut(s)	59, 273, 296, 548, 1325, 1628, 1926, 1934
MaeIII	GTNAC	9 cut(s)	168, 274, 297, 647, 1405, 1615, 1930, 2020, 2049
MalI	GATC	1 cut(s)	1350
MbiI	CCGCTC	3 cut(s)	266, 355, 1071
MboI	GATC	1 cut(s)	1348
MboII	GAAGA	5 cut(s)	82, 1046, 1594, 1871, 2012
MhlI	GDGCHC	3 cut(s)	471, 872, 1092
MlsI	TGGCCA	1 cut(s)	1446
MluCI	AATT	8 cut(s)	619, 765, 1149, 1189, 1339, 1834, 1842, 1973
MluNI	TGGCCA	1 cut(s)	1446
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	6 cut(s)	22, 152, 275, 547, 758, 1600
MmeI	TCCRAC	1 cut(s)	636
Mox20I	TGGCCA	1 cut(s)	1446
Mph1103I	ATGCAT	3 cut(s)	837, 1786, 1852
MroXI	GAANNNNTTC	2 cut(s)	1784, 2007
MscI	TGGCCA	1 cut(s)	1446
MseI	TTAA	6 cut(s)	693, 1518, 1662, 1740, 1841, 1845
Msp20I	TGGCCA	1 cut(s)	1446
Mva1269I	GAATGC	3 cut(s)	919, 1784, 1786
MvaI	CCWGG	7 cut(s)	203, 605, 631, 641, 677, 827, 1411
MvnI	CGCG	8 cut(s)	98, 422, 431, 494, 584, 881, 1145, 1499
NarI	GGCGCC	1 cut(s)	175
NciI	CCSGG	4 cut(s)	21, 308, 338, 347
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	1 cut(s)	1348
NheI	GCTAGC	2 cut(s)	1172, 1771
NlaIII	CATG	8 cut(s)	272, 835, 850, 1355, 1454, 1528, 1903, 2074
NlaIV	GGNNCC	4 cut(s)	176, 351, 437, 1986
NmeAIII	GCCGAG	4 cut(s)	166, 263, 337, 352
NmuCI	GTSAC	3 cut(s)	168, 274, 297
NsiI	ATGCAT	3 cut(s)	837, 1786, 1852
PacI	TTAATTAA	1 cut(s)	1845
PagI	TCATGA	2 cut(s)	268, 1524
PauI	GCGCGC	1 cut(s)	1497
PceI	AGGCCT	1 cut(s)	1880
PcsI	WCGNNNNNNNCGW	6 cut(s)	189, 290, 309, 395, 504, 554
PctI	GAATGC	3 cut(s)	919, 1784, 1786
PdmI	GAANNNNTTC	2 cut(s)	1784, 2007
PfeI	GAWTC	5 cut(s)	682, 713, 1043, 1390, 2008
Pfl23II	CGTACG	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	629
PkrI	GCNGC	2 cut(s)	1024, 1185
PleI	GAGTC	6 cut(s)	22, 151, 275, 547, 757, 1599
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	6 cut(s)	22, 151, 275, 547, 757, 1599
Ppu21I	YACGTR	1 cut(s)	1935
PshBI	ATTAAT	3 cut(s)	1740, 1841, 1845
PsiI	TTATAA	2 cut(s)	738, 1980
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	7 cut(s)	201, 603, 629, 639, 675, 825, 1409
PspEI	GGTNACC	1 cut(s)	2020
PspGI	CCWGG	7 cut(s)	201, 603, 629, 639, 675, 825, 1409
PspLI	CGTACG	1 cut(s)	462
PspN4I	GGNNCC	4 cut(s)	176, 351, 437, 1986
PspPI	GGNCC	3 cut(s)	339, 349, 1570
PstI	CTGCAG	1 cut(s)	1702
PstNI	CAGNNNCTG	1 cut(s)	2083
PteI	GCGCGC	1 cut(s)	1497
RsaI	GTAC	2 cut(s)	335, 464
RsaNI	GTAC	2 cut(s)	334, 463
SacI	GAGCTC	1 cut(s)	471
SaqAI	TTAA	6 cut(s)	693, 1518, 1662, 1740, 1841, 1845
SatI	GCNGC	2 cut(s)	1023, 1184
Sau3AI	GATC	1 cut(s)	1348
Sau96I	GGNCC	3 cut(s)	339, 349, 1570
SchI	GAGTC	6 cut(s)	22, 152, 275, 547, 758, 1600
SduI	GDGCHC	3 cut(s)	471, 872, 1092
SfaNI	GCATC	7 cut(s)	624, 1027, 1102, 1470, 1575, 1657, 1861
SfcI	CTRYAG	2 cut(s)	670, 1698
SfiI	GGCCNNNNNGGCC	1 cut(s)	347
SfoI	GGCGCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SnaBI	TACGTA	1 cut(s)	1935
Sse9I	AATT	8 cut(s)	619, 765, 1149, 1189, 1339, 1834, 1842, 1973
SseBI	AGGCCT	1 cut(s)	1880
SsiI	CCGC	9 cut(s)	76, 108, 138, 217, 264, 353, 879, 1040, 1071
SspDI	GGCGCC	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	1880
StyI	CCWWGG	2 cut(s)	846, 1537
TaaI	ACNGT	6 cut(s)	168, 211, 647, 777, 1405, 2055
TaiI	ACGT	8 cut(s)	62, 276, 299, 551, 1328, 1631, 1929, 1937
TaqI	TCGA	4 cut(s)	26, 183, 303, 948
TasI	AATT	8 cut(s)	619, 765, 1149, 1189, 1339, 1834, 1842, 1973
TfiI	GAWTC	5 cut(s)	682, 713, 1043, 1390, 2008
Tru1I	TTAA	6 cut(s)	693, 1518, 1662, 1740, 1841, 1845
Tru9I	TTAA	6 cut(s)	693, 1518, 1662, 1740, 1841, 1845
TscAI	CASTG	3 cut(s)	1005, 1782, 2088
TseFI	GTSAC	3 cut(s)	168, 274, 297
TseI	GCWGC	2 cut(s)	1022, 1183
Tsp45I	GTSAC	3 cut(s)	168, 274, 297
TspDTI	ATGAA	9 cut(s)	971, 1421, 1575, 1706, 1827, 1916, 1964, 2013, 2087
TspGWI	ACGGA	3 cut(s)	31, 546, 1876
TspRI	CASTG	3 cut(s)	1005, 1782, 2088
VspI	ATTAAT	3 cut(s)	1740, 1841, 1845
XagI	CCTNNNNNAGG	2 cut(s)	608, 1369
XapI	RAATTY	1 cut(s)	1973
XmaJI	CCTAGG	1 cut(s)	1537
XmiI	GTMKAC	1 cut(s)	1937
XmnI	GAANNNNTTC	2 cut(s)	1784, 2007
ZraI	GACGTC	2 cut(s)	274, 297
Zsp2I	ATGCAT	3 cut(s)	837, 1786, 1852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.