Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Reverse (-)

48236302 .. 48241868

Gene Structure 5567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGGAAGTGAGCTCTGAGGAGGCATCTCTTCAAAGGAGCCAACAGCTTAGAGAGCTCTACGACTCACTGTCCGCGGGAGAAACAAACCAGCCAGCTCGCCGCCCTTGTGCTGCCTTGTCCCCGGAGGACTTAACTGAGTCGGAATGGTTCTACTTGATGTGTGTATCTTTCTCATTTCCCCCGGGAGTTGGGTTGCCGGGAAAAGCATACACAAGGAGGCAACACGTATGGCTCACTGGTGCAAATGAAGTAGATAGCAAAACCTTCTCCAGAGCTATTTTAGCCAAGAGTGCTCGCGTTCAAACTGTAGTGTGCATTCCTCTCTTAGACGGCGTCGTTGAGCTAGGCACAACAGATAGGGTTCCAGAAGACCTTGCCTTCGTCCAACACGTCAAAACTTTCTTCGTCGACCACCACCACCTTCCACCACCAAAGCCCGCCCTCTCGGAGCACTCCACCTCCAACCCCGCCACCTCCTCCGACCACCACCCCCGTTTCCACTCTCCACATCTCACCGCCATCCGCAACAACGCTGCCGCAAACAACGCCCAGCCCCTCCACGCAGCCGCCCAAGAAGACGAAGAGGACGAGGACGAGGAAGAAGACGACCAGGAAGAAGAAGGAGAGTCCGACTCCGAAGCCGAAACCGGCCGTAACGGTCGTCCTCTCGCTGCTGCAGCGGGACCCAACGTTCCCGCAGCCGAGCCGAGCGAGCTAATGCAGCTCGAAATGTCCGAAGACATCCGCCTCGGCTCCCCCGACGACGCCTCCAACAATTTGGACTCGGACTTCCACATGCTGACCGTCAGCCAGTCCGCCAACGCCGCCAATCAGCAGCGCCAAGCAGACTCGTATCGCGCCGAGTCGACCCGGCGGTGGCCTCCGGTCCAACCGCCAATGACCGCTGTCCAACCACCTCCCTCAGGACCGCTGGCATTGGAGGAATTGACCCACGACGACACACACTATTCGGAAACAGTGTCGACCATACTTCAAACCACCAGGTGGACCGATTCGTCGTCCAATGACTACGTCACCTACTCCACCCAATCAGCTTTCGCCAAGTGGACGAGCCGGGCTGACCACCAGCTCTTGGTTCCGGTCGAGGGCACATCCCAGTGGCTCCTAAAGTACATTTTGTTTAGTGTACCGTTCCTACATACGAAATATCGGGACGAGAATTCCCCCAAGTCTCACGACGTCGACGGCTCGAGCCGGTTGAGGAAGGGGACGTCACAAGACGAGCTAAGTGCTAACCATGTGTTAGCGGAGCGGCGTCGTAGAGAGAAGCTTAATGAGAGGTTTATTATATTGAGGTCTTTGGTGCCTTTTGTGACAAAAATGGACAAGGCCTCGATTTTGGGGGATACGATCGAGTACGTGAAGCAACTGCGTAAGAAGATTCAGGATCTCGAGGCACGTAACGTGCATTTGGAGGACGATCAACGGACGAGATCGGCGGGGGAGATGCAACGGTCGAGTAGCATGAAAGAGCTGCGAAGCGGGCTCACGGTGACGGAGCGCTCCCGCGTGGGCCCGCCCGGGTCGGACAAGAGGAAGTTGAGGATTGTGGAGGGGAGTGGCGGAGCGGCGATCGCTAAGCCTAAACTGATAGAGGAACCGACACCACCTCCGCCACCATTGGCACCGGAACCGGAACCGGCCCCGCCAACACCCATGTTGACGGGGACGTCTCTAGAGGTGTCGATAATAGAGAGCGATGGATTGTTGGAGCTCCAATGCCCGTACAGAGAAGGGTTGTTACTTGATGTCATGCAAACCCTACGAGATCTCCGAATTGAGACCACGGTTGTGCAATCCTCGTTGAATAGTGGCACCTTCGTAGCTGAGCTAAGGGCCAAGGTGGGCAAGAAAACAACCATTACAGAAGTGAAGAGGGCAGTAAATCAAGTGATACCCCAATCTGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

644

Amino Acids

71.31

Weight (kDa)

5.22

Isoelectric Point (pI)

65.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	5 - 135	1.1e-36	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	418 - 465	6.4e-13	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	566 - 639	2.8e-15	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1015, 1690
AatII	GACGTC	3 cut(s)	1203, 1235, 1694
AccB1I	GGYRCC	3 cut(s)	1324, 1645, 1835
AccB7I	CCANNNNNTGG	2 cut(s)	1005, 1093
AccBSI	CCGCTC	2 cut(s)	1273, 1589
AccI	GTMKAC	4 cut(s)	408, 866, 983, 1203
AccII	CGCG	4 cut(s)	74, 297, 858, 1530
AclI	AACGTT	1 cut(s)	690
AclWI	GGATC	1 cut(s)	1416
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	1180
AcyI	GRCGYC	6 cut(s)	333, 765, 1200, 1232, 1276, 1691
AdeI	CACNNNGTG	1 cut(s)	1005
AfaI	GTAC	4 cut(s)	1133, 1149, 1379, 1748
AfeI	AGCGCT	1 cut(s)	1523
AfiI	CCNNNNNNNGG	6 cut(s)	188, 876, 923, 1005, 1093, 1106
AflIII	ACRYGT	2 cut(s)	223, 388
AgsI	TTSAA	4 cut(s)	32, 302, 995, 1828
AhdI	GACNNNNNGTC	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	609, 1001
AleI	CACNNNNGTG	1 cut(s)	1811
AloI	GAACNNNNNNTCC	2 cut(s)	675, 707
Alw21I	GWGCWC	5 cut(s)	14, 57, 295, 453, 1737
Alw26I	GTCTC	3 cut(s)	1197, 1698, 1796
AlwI	GGATC	1 cut(s)	1416
Ama87I	CYCGRG	4 cut(s)	181, 1210, 1412, 1541
Aor51HI	AGCGCT	1 cut(s)	1523
AoxI	GGCC	6 cut(s)	649, 878, 1350, 1534, 1662, 1857
ApaI	GGGCCC	1 cut(s)	1538
ApoI	RAATTY	1 cut(s)	1180
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AsiSI	GCGATCGC	1 cut(s)	1596
AspLEI	GCGC	3 cut(s)	840, 860, 1524
AspS9I	GGNCC	8 cut(s)	683, 886, 926, 1008, 1534, 1535, 1663, 1857
AsuC2I	CCSGG	8 cut(s)	122, 182, 183, 198, 871, 1076, 1542, 1543
AsuHPI	GGTGA	3 cut(s)	505, 1027, 1525
AvaI	CYCGRG	4 cut(s)	181, 1210, 1412, 1541
AvaII	GGWCC	4 cut(s)	683, 886, 926, 1008
AxyI	CCTNAGG	1 cut(s)	922
BaeGI	GKGCMC	2 cut(s)	1112, 1538
BanI	GGYRCC	3 cut(s)	1324, 1645, 1835
BanII	GRGCYC	5 cut(s)	14, 57, 1509, 1538, 1737
BarI	GAAGNNNNNNTAC	2 cut(s)	1746, 1778
BbsI	GAAGAC	4 cut(s)	375, 582, 609, 744
Bbv12I	GWGCWC	5 cut(s)	14, 57, 295, 453, 1737
BccI	CCATC	2 cut(s)	527, 1715
BceAI	ACGGC	3 cut(s)	346, 636, 1222
BcgI	CGANNNNNNTGC	2 cut(s)	1232, 1266
BciT130I	CCWGG	2 cut(s)	611, 1003
BciVI	GTATCC	1 cut(s)	1360
BcnI	CCSGG	8 cut(s)	122, 182, 183, 198, 871, 1076, 1542, 1543
BcoDI	GTCTC	3 cut(s)	1197, 1698, 1796
BfaI	CTAG	2 cut(s)	344, 1697
BfmI	CTRYAG	2 cut(s)	306, 675
BfoI	RGCGCY	2 cut(s)	841, 1525
BfuI	GTATCC	1 cut(s)	1360
BglII	AGATCT	1 cut(s)	1789
BlpI	GCTNAGC	2 cut(s)	1599, 1848
Bme18I	GGWCC	4 cut(s)	683, 886, 926, 1008
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmeT110I	CYCGRG	4 cut(s)	181, 1210, 1412, 1541
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	8 cut(s)	683, 886, 926, 1008, 1534, 1535, 1663, 1857
BmrI	ACTGGG	1 cut(s)	1111
BmsI	GCATC	2 cut(s)	32, 1458
BmuI	ACTGGG	1 cut(s)	1111
BoxI	GACNNNNGTC	1 cut(s)	905
BpiI	GAAGAC	4 cut(s)	375, 582, 609, 744
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	1853
Bpu1102I	GCTNAGC	2 cut(s)	1599, 1848
BpuMI	CCSGG	8 cut(s)	122, 182, 183, 198, 871, 1076, 1542, 1543
BsaAI	YACGTR	3 cut(s)	226, 1381, 1421
BsaHI	GRCGYC	6 cut(s)	333, 765, 1200, 1232, 1276, 1691
BsaI	GGTCTC	1 cut(s)	1796
BsaJI	CCNNGG	8 cut(s)	72, 120, 180, 181, 748, 1541, 1806, 1860
BsaWI	WCCGGW	4 cut(s)	883, 1099, 1648, 1654
BsaXI	ACNNNNNCTCC	8 cut(s)	443, 473, 752, 782, 1615, 1645, 1776, 1806
Bsc4I	CCNNNNNNNGG	6 cut(s)	188, 876, 923, 1005, 1093, 1106
Bse118I	RCCGGY	3 cut(s)	647, 1215, 1660
Bse1I	ACTGG	3 cut(s)	241, 811, 1117
Bse21I	CCTNAGG	1 cut(s)	922
BseBI	CCWGG	2 cut(s)	611, 1003
BseDI	CCNNGG	8 cut(s)	72, 120, 180, 181, 748, 1541, 1806, 1860
BseGI	GGATG	3 cut(s)	519, 741, 1112
BseLI	CCNNNNNNNGG	6 cut(s)	188, 876, 923, 1005, 1093, 1106
BseMII	CTCAG	4 cut(s)	6, 126, 936, 1839
BseNI	ACTGG	3 cut(s)	241, 811, 1117
BseRI	GAGGAG	2 cut(s)	32, 466
BseSI	GKGCMC	2 cut(s)	1112, 1538
BseX3I	CGGCCG	1 cut(s)	649
BseYI	CCCAGC	1 cut(s)	549
Bsh1236I	CGCG	4 cut(s)	74, 297, 858, 1530
Bsh1285I	CGRYCG	6 cut(s)	652, 661, 1104, 1374, 1478, 1596
BshFI	GGCC	6 cut(s)	651, 880, 1352, 1536, 1664, 1859
BshNI	GGYRCC	3 cut(s)	1324, 1645, 1835
BsiEI	CGRYCG	6 cut(s)	652, 661, 1104, 1374, 1478, 1596
BsiHKAI	GWGCWC	5 cut(s)	14, 57, 295, 453, 1737
BsiHKCI	CYCGRG	4 cut(s)	181, 1210, 1412, 1541
BslFI	GGGAC	5 cut(s)	103, 696, 1187, 1243, 1702
BslI	CCNNNNNNNGG	6 cut(s)	188, 876, 923, 1005, 1093, 1106
BsmAI	GTCTC	3 cut(s)	1197, 1698, 1796
BsmBI	CGTCTC	1 cut(s)	1698
BsmFI	GGGAC	5 cut(s)	103, 696, 1187, 1243, 1702
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	6 cut(s)	651, 880, 1352, 1536, 1664, 1859
Bso31I	GGTCTC	1 cut(s)	1796
BsoBI	CYCGRG	4 cut(s)	181, 1210, 1412, 1541
Bsp120I	GGGCCC	1 cut(s)	1534
Bsp1286I	GDGCHC	8 cut(s)	14, 57, 295, 453, 1112, 1509, 1538, 1737
Bsp143I	GATC	6 cut(s)	1371, 1408, 1441, 1454, 1593, 1789
Bsp1720I	GCTNAGC	2 cut(s)	1599, 1848
BspANI	GGCC	6 cut(s)	651, 880, 1352, 1536, 1664, 1859
BspCNI	CTCAG	4 cut(s)	7, 127, 935, 1840
BspFNI	CGCG	4 cut(s)	74, 297, 858, 1530
BspMAI	CTGCAG	1 cut(s)	679
BspPI	GGATC	1 cut(s)	1416
BspT107I	GGYRCC	3 cut(s)	1324, 1645, 1835
BspTNI	GGTCTC	1 cut(s)	1796
BsrBI	CCGCTC	2 cut(s)	1273, 1589
BsrFI	RCCGGY	3 cut(s)	647, 1215, 1660
BsrI	ACTGG	3 cut(s)	241, 811, 1117
BssAI	RCCGGY	3 cut(s)	647, 1215, 1660
BssECI	CCNNGG	8 cut(s)	72, 120, 180, 181, 748, 1541, 1806, 1860
BssMI	GATC	6 cut(s)	1371, 1408, 1441, 1454, 1593, 1789
BssNI	GRCGYC	6 cut(s)	333, 765, 1200, 1232, 1276, 1691
BssT1I	CCWWGG	1 cut(s)	1860
Bst2UI	CCWGG	2 cut(s)	611, 1003
Bst4CI	ACNGT	9 cut(s)	69, 307, 659, 805, 979, 1152, 1476, 1513, 1810
Bst6I	CTCTTC	3 cut(s)	33, 576, 1889
BstACI	GRCGYC	6 cut(s)	333, 765, 1200, 1232, 1276, 1691
BstBAI	YACGTR	3 cut(s)	226, 1381, 1421
BstC8I	GCNNGC	8 cut(s)	93, 97, 295, 438, 713, 933, 1505, 1538
BstDEI	CTNAG	9 cut(s)	15, 47, 135, 325, 922, 1247, 1599, 1848, 1853
BstDSI	CCRYGG	2 cut(s)	72, 1806
BstENI	CCTNNNNNAGG	1 cut(s)	921
BstF5I	GGATG	3 cut(s)	519, 741, 1112
BstFNI	CGCG	4 cut(s)	74, 297, 858, 1530
BstH2I	RGCGCY	2 cut(s)	841, 1525
BstHHI	GCGC	3 cut(s)	840, 860, 1524
BstKTI	GATC	6 cut(s)	1374, 1411, 1444, 1457, 1596, 1792
BstMAI	GTCTC	3 cut(s)	1197, 1698, 1796
BstMBI	GATC	6 cut(s)	1371, 1408, 1441, 1454, 1593, 1789
BstMCI	CGRYCG	6 cut(s)	652, 661, 1104, 1374, 1478, 1596
BstNI	CCWGG	2 cut(s)	611, 1003
BstNSI	RCATGY	1 cut(s)	799
BstPAI	GACNNNNGTC	1 cut(s)	905
BstSFI	CTRYAG	2 cut(s)	306, 675
BstSLI	GKGCMC	2 cut(s)	1112, 1538
BstUI	CGCG	4 cut(s)	74, 297, 858, 1530
BstV2I	GAAGAC	4 cut(s)	375, 582, 609, 744
BstX2I	RGATCY	2 cut(s)	1408, 1789
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	2 cut(s)	1408, 1789
BstZI	CGGCCG	1 cut(s)	649
Bsu36I	CCTNAGG	1 cut(s)	922
BsuI	GTATCC	1 cut(s)	1360
BsuRI	GGCC	6 cut(s)	651, 880, 1352, 1536, 1664, 1859
BtgI	CCRYGG	2 cut(s)	72, 1806
BtgZI	GCGATG	1 cut(s)	1734
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	519, 741, 1112
BtsIMutI	CAGTG	4 cut(s)	65, 234, 984, 1124
Cac8I	GCNNGC	8 cut(s)	93, 97, 295, 438, 713, 933, 1505, 1538
CfoI	GCGC	3 cut(s)	840, 860, 1524
Cfr10I	RCCGGY	3 cut(s)	647, 1215, 1660
Cfr13I	GGNCC	8 cut(s)	683, 886, 926, 1008, 1534, 1535, 1663, 1857
Cfr42I	CCGCGG	1 cut(s)	75
Cfr9I	CCCGGG	2 cut(s)	181, 1541
CseI	GACGC	3 cut(s)	322, 773, 1265
CsiI	ACCWGGT	1 cut(s)	1001
Csp6I	GTAC	4 cut(s)	1132, 1148, 1378, 1747
CviAII	CATG	5 cut(s)	796, 1259, 1486, 1678, 1774
CviQI	GTAC	4 cut(s)	1132, 1148, 1378, 1747
DdeI	CTNAG	9 cut(s)	15, 47, 135, 325, 922, 1247, 1599, 1848, 1853
DpnI	GATC	6 cut(s)	1373, 1410, 1443, 1456, 1595, 1791
DpnII	GATC	6 cut(s)	1371, 1408, 1441, 1454, 1593, 1789
DraIII	CACNNNGTG	1 cut(s)	1005
DrdI	GACNNNNNNGTC	2 cut(s)	1015, 1690
DriI	GACNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	2 cut(s)	1015, 1690
EaeI	YGGCCR	1 cut(s)	649
EagI	CGGCCG	1 cut(s)	649
Eam1104I	CTCTTC	3 cut(s)	33, 576, 1889
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	3 cut(s)	33, 576, 1889
EciI	GGCGGA	4 cut(s)	734, 805, 1599, 1623
Ecl136II	GAGCTC	3 cut(s)	12, 55, 1735
EclXI	CGGCCG	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	1860
Eco147I	AGGCCT	1 cut(s)	1352
Eco24I	GRGCYC	5 cut(s)	14, 57, 1509, 1538, 1737
Eco31I	GGTCTC	1 cut(s)	1796
Eco47I	GGWCC	4 cut(s)	683, 886, 926, 1008
Eco47III	AGCGCT	1 cut(s)	1523
Eco52I	CGGCCG	1 cut(s)	649
Eco53kI	GAGCTC	3 cut(s)	12, 55, 1735
Eco81I	CCTNAGG	1 cut(s)	922
Eco88I	CYCGRG	4 cut(s)	181, 1210, 1412, 1541
EcoICRI	GAGCTC	3 cut(s)	12, 55, 1735
EcoNI	CCTNNNNNAGG	1 cut(s)	921
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRI	GAATTC	1 cut(s)	1180
EcoRII	CCWGG	2 cut(s)	609, 1001
EcoT14I	CCWWGG	1 cut(s)	1860
EcoT38I	GRGCYC	5 cut(s)	14, 57, 1509, 1538, 1737
ErhI	CCWWGG	1 cut(s)	1860
Esp3I	CGTCTC	1 cut(s)	1698
FaeI	CATG	5 cut(s)	799, 1262, 1489, 1681, 1777
FaqI	GGGAC	5 cut(s)	103, 696, 1187, 1243, 1702
FatI	CATG	5 cut(s)	795, 1258, 1485, 1677, 1773
FblI	GTMKAC	4 cut(s)	408, 866, 983, 1203
FokI	GGATG	3 cut(s)	506, 728, 1099
FriOI	GRGCYC	5 cut(s)	14, 57, 1509, 1538, 1737
FspBI	CTAG	2 cut(s)	344, 1697
GlaI	GCGC	3 cut(s)	839, 859, 1523
GsaI	CCCAGC	1 cut(s)	553
GsuI	CTGGAG	1 cut(s)	253
HaeII	RGCGCY	2 cut(s)	841, 1525
HaeIII	GGCC	6 cut(s)	651, 880, 1352, 1536, 1664, 1859
HgaI	GACGC	3 cut(s)	322, 773, 1265
HhaI	GCGC	3 cut(s)	840, 860, 1524
Hin1I	GRCGYC	6 cut(s)	333, 765, 1200, 1232, 1276, 1691
Hin1II	CATG	5 cut(s)	799, 1262, 1489, 1681, 1777
Hin6I	GCGC	3 cut(s)	838, 858, 1522
HinP1I	GCGC	3 cut(s)	838, 858, 1522
HincII	GTYRAC	5 cut(s)	409, 867, 984, 1204, 1683
HindII	GTYRAC	5 cut(s)	409, 867, 984, 1204, 1683
HindIII	AAGCTT	1 cut(s)	1289
HphI	GGTGA	3 cut(s)	505, 1027, 1525
Hpy166II	GTNNAC	8 cut(s)	409, 867, 984, 1008, 1068, 1148, 1204, 1683
Hpy188III	TCNNGA	8 cut(s)	270, 365, 924, 1172, 1196, 1406, 1412, 1697
Hpy8I	GTNNAC	8 cut(s)	409, 867, 984, 1008, 1068, 1148, 1204, 1683
HpyAV	CCTTC	7 cut(s)	274, 388, 431, 614, 1219, 1748, 1849
HpyCH4III	ACNGT	9 cut(s)	69, 307, 659, 805, 979, 1152, 1476, 1513, 1810
HpyCH4V	TGCA	8 cut(s)	242, 315, 677, 721, 1429, 1471, 1777, 1816
HpyF3I	CTNAG	9 cut(s)	15, 47, 135, 325, 922, 1247, 1599, 1848, 1853
Hsp92I	GRCGYC	6 cut(s)	333, 765, 1200, 1232, 1276, 1691
Hsp92II	CATG	5 cut(s)	799, 1262, 1489, 1681, 1777
HspAI	GCGC	3 cut(s)	838, 858, 1522
KflI	GGGWCCC	1 cut(s)	683
KspI	CCGCGG	1 cut(s)	75
Kzo9I	GATC	6 cut(s)	1371, 1408, 1441, 1454, 1593, 1789
LweI	GCATC	2 cut(s)	32, 1458
MabI	ACCWGGT	1 cut(s)	1001
MaeI	CTAG	2 cut(s)	344, 1697
MaeIII	GTNAC	7 cut(s)	653, 1033, 1233, 1333, 1421, 1513, 1761
MalI	GATC	6 cut(s)	1373, 1410, 1443, 1456, 1595, 1791
MbiI	CCGCTC	2 cut(s)	1273, 1589
MboI	GATC	6 cut(s)	1371, 1408, 1441, 1454, 1593, 1789
MflI	RGATCY	2 cut(s)	1408, 1789
MhlI	GDGCHC	8 cut(s)	14, 57, 295, 453, 1112, 1509, 1538, 1737
MluCI	AATT	4 cut(s)	775, 944, 1180, 1797
MlyI	GAGTC	8 cut(s)	56, 146, 626, 635, 776, 842, 872, 1922
MseI	TTAA	3 cut(s)	131, 1293, 1933
MslI	CAYNNNNRTG	2 cut(s)	1117, 1811
MspA1I	CMGCKG	4 cut(s)	74, 680, 905, 931
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	611, 1003
MvnI	CGCG	4 cut(s)	74, 297, 858, 1530
NciI	CCSGG	8 cut(s)	122, 182, 183, 198, 871, 1076, 1542, 1543
NdeII	GATC	6 cut(s)	1371, 1408, 1441, 1454, 1593, 1789
NlaIII	CATG	5 cut(s)	799, 1262, 1489, 1681, 1777
NmeAIII	GCCGAG	4 cut(s)	727, 729, 732, 886
NmuCI	GTSAC	4 cut(s)	1033, 1233, 1333, 1513
NspI	RCATGY	1 cut(s)	799
OliI	CACNNNNGTG	1 cut(s)	1811
PaeR7I	CTCGAG	2 cut(s)	1210, 1412
PceI	AGGCCT	1 cut(s)	1352
PcsI	WCGNNNNNNNCGW	5 cut(s)	387, 585, 732, 756, 1792
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	1013, 1402
PflFI	GACNNNGTC	2 cut(s)	332, 1031
PflMI	CCANNNNNTGG	2 cut(s)	1005, 1093
Ple19I	CGATCG	2 cut(s)	1374, 1596
PleI	GAGTC	8 cut(s)	56, 145, 626, 634, 776, 842, 871, 1922
PpsI	GAGTC	8 cut(s)	56, 145, 626, 634, 776, 842, 871, 1922
Ppu21I	YACGTR	3 cut(s)	226, 1381, 1421
PpuMI	RGGWCCY	1 cut(s)	683
PshAI	GACNNNNGTC	1 cut(s)	905
Psp124BI	GAGCTC	3 cut(s)	14, 57, 1737
Psp1406I	AACGTT	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	2 cut(s)	609, 1001
PspFI	CCCAGC	1 cut(s)	549
PspGI	CCWGG	2 cut(s)	609, 1001
PspOMI	GGGCCC	1 cut(s)	1534
PspPI	GGNCC	8 cut(s)	683, 886, 926, 1008, 1534, 1535, 1663, 1857
PspPPI	RGGWCCY	1 cut(s)	683
PspXI	VCTCGAGB	1 cut(s)	1210
PstI	CTGCAG	1 cut(s)	679
PsuI	RGATCY	2 cut(s)	1408, 1789
PsyI	GACNNNGTC	2 cut(s)	332, 1031
PvuI	CGATCG	2 cut(s)	1374, 1596
RgaI	GCGATCGC	1 cut(s)	1596
RsaI	GTAC	4 cut(s)	1133, 1149, 1379, 1748
RsaNI	GTAC	4 cut(s)	1132, 1148, 1378, 1747
RseI	CAYNNNNRTG	2 cut(s)	1117, 1811
SacI	GAGCTC	3 cut(s)	14, 57, 1737
SacII	CCGCGG	1 cut(s)	75
SalI	GTCGAC	4 cut(s)	407, 865, 982, 1202
SaqAI	TTAA	3 cut(s)	131, 1293, 1933
Sau3AI	GATC	6 cut(s)	1371, 1408, 1441, 1454, 1593, 1789
Sau96I	GGNCC	8 cut(s)	683, 886, 926, 1008, 1534, 1535, 1663, 1857
SchI	GAGTC	8 cut(s)	56, 146, 626, 635, 776, 842, 872, 1922
SduI	GDGCHC	8 cut(s)	14, 57, 295, 453, 1112, 1509, 1538, 1737
SexAI	ACCWGGT	1 cut(s)	1001
SfaAI	GCGATCGC	1 cut(s)	1596
SfaNI	GCATC	2 cut(s)	32, 1458
SfcI	CTRYAG	2 cut(s)	306, 675
Sfr274I	CTCGAG	2 cut(s)	1210, 1412
Sfr303I	CCGCGG	1 cut(s)	75
SgfI	GCGATCGC	1 cut(s)	1596
SgrBI	CCGCGG	1 cut(s)	75
SgrDI	CGTCGACG	1 cut(s)	1202
SinI	GGWCC	4 cut(s)	683, 886, 926, 1008
SlaI	CTCGAG	2 cut(s)	1210, 1412
SmaI	CCCGGG	2 cut(s)	183, 1543
SmiMI	CAYNNNNRTG	2 cut(s)	1117, 1811
SmlI	CTYRAG	2 cut(s)	1210, 1412
SmoI	CTYRAG	2 cut(s)	1210, 1412
Sse9I	AATT	4 cut(s)	775, 944, 1180, 1797
SseBI	AGGCCT	1 cut(s)	1352
SspMI	CTAG	2 cut(s)	344, 1697
SstI	GAGCTC	3 cut(s)	14, 57, 1737
StuI	AGGCCT	1 cut(s)	1352
StyI	CCWWGG	1 cut(s)	1860
TaaI	ACNGT	9 cut(s)	69, 307, 659, 805, 979, 1152, 1476, 1513, 1810
TaqII	GACCGA	1 cut(s)	1025
TasI	AATT	4 cut(s)	775, 944, 1180, 1797
TatI	WGTACW	1 cut(s)	1131
TauI	GCSGC	6 cut(s)	102, 539, 569, 827, 1276, 1592
TfiI	GAWTC	2 cut(s)	1013, 1402
Tru1I	TTAA	3 cut(s)	131, 1293, 1933
Tru9I	TTAA	3 cut(s)	131, 1293, 1933
TscAI	CASTG	4 cut(s)	72, 241, 984, 1124
TseFI	GTSAC	4 cut(s)	1033, 1233, 1333, 1513
Tsp45I	GTSAC	4 cut(s)	1033, 1233, 1333, 1513
TspDTI	ATGAA	2 cut(s)	261, 1502
TspGWI	ACGGA	2 cut(s)	1462, 1532
TspMI	CCCGGG	2 cut(s)	181, 1541
TspRI	CASTG	4 cut(s)	72, 241, 984, 1124
Tth111I	GACNNNGTC	2 cut(s)	332, 1031
Van91I	CCANNNNNTGG	2 cut(s)	1005, 1093
VpaK11BI	GGWCC	4 cut(s)	683, 886, 926, 1008
XagI	CCTNNNNNAGG	1 cut(s)	921
XapI	RAATTY	1 cut(s)	1180
XbaI	TCTAGA	1 cut(s)	1696
XceI	RCATGY	1 cut(s)	799
XhoI	CTCGAG	2 cut(s)	1210, 1412
XmaI	CCCGGG	2 cut(s)	181, 1541
XmiI	GTMKAC	4 cut(s)	408, 866, 983, 1203
XspI	CTAG	2 cut(s)	344, 1697
ZraI	GACGTC	3 cut(s)	1201, 1233, 1692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.