Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Forward (+)

61793386 .. 61797398

Gene Structure 4013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG442400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGCTTCTTCTGCCTCTGCCTGGTTCCACCCGATTCCCATCCGTTCAATTATCTTCGTCTCCGATACTCATCCGCCACCACCACATCTTCCACGCGCCTCCCTCCGCCCTTTCCACTTCCGCCGAATCTCATCTCCCCCCAATTTCATCCTCACGACGTCGTTTGGATAACTACGACACCCACCAGGCCGCCGTTTCCCGCTACGACTTCGCTCCACTCCTCGCCTTCCTCTCCACCTCGTCCAGCTCCACTCATGACGGCATTGACTCGGCGTCGCCGACGTCACTCGACCCGGCCGAGTTCCAGCTGGCCGAGTCGTACCGGGCCGTCCCGGCCCCTCTCTGGCACTCCCTCCTCAAATCCCTCTGCTCCTCCTCCTCCTCCTTGAAACAGGCCTACGCGCTCGTTTCGTGGCTCCAGAAGCACAACCTCTGCTTCTCCTATGAGCTCCTCTACTCCATCCTCATCCACGCGCTCGGACGCTCCGAGAAGCTCTACGAGGCGTTCCTGCTCTCTCAGCGGCAGACGTTGACTCCGTTGACCTACAACGCTCTCATCGGCGCGTGCGCTCGCAACGGCGACCTGGAGAAGGCGCTCAATTTGATGTCCAGGATGCGCCAGGACGGTTACCGATCGGATTTCGTGAATTACAGCCTGGTAATTCAGTCGCTTAATCGCTCAAACAAGGTTGATTCTCCAATTATGTTAAAGCTTTACAGGGAGATTGAGTCTGAGAATGTTGAGATTGATGGACAGCTGCTAAATGATTTGATTGTTGGTTTCGCAAAAGCCGGCGAGCCCAGCCAGGCTATGCATTTTCTTGCCATGGTGCAGGCTAGTGGTTTGAGCCCCAAAACCGCCACTCTGGTGGCGGTTATTTCGGCTTTGGGGAACTCCGGTAGGGTGGTTGAGGCGGAAGCTATTTTCGAGGAAATGAAAGAGGGTGGGTTGCAACCGAGGACTAGAGCTTACAATGCACTGCTGAAAGGGTATGTGAAGGCAGCTTCTTTGGAAGATGCTGAATCCATTGTGTCACAGATGGAGAGGAGTGGCATTTCACCGGATGAGCACACTTACAGCCTCCTCATTGATGCTTATGCCAATGCCGGTAGGTGGGAGAGCGCGAGAATTGTGTTGAAGGAGATGGAGGCTAGCAATGTGCAGCCTAATTCGTATGTTTTCAGTAGGATTTTAGCTAGTTATCGGGATAGAGGGGAGTGGCAGAAGTCATTTCAAGTTTTGAGGGAGATGAGGAGCAGTGGGGTAATGCCTGATAGGCATTTTTACAATGTGATGATTGATACTTTTGGAAAGTCTAATTGTCTTGATCATGCTATGGCTACCTTTGAAAGGATGCTATCGGAGGGGATTCAGCCGGATACTGTTACCTGGAATACCCTCATAGATAGTCATTGTAAATCAGGCCACCATGTAAGGGCAGAGGAGTTGTTTGAGGAAATGCAGGAGAGTGGTTGCGCGCCTTGTGCCACCACCTTTAACATCATGATAAACTCCTTAGGGGAGCAGGAGAGATGGGATGAAGTGAAGGGCCTAATGGGGAAGATGCAGAGTCAGGGTTTACTTCCGAATATAGTTACTTATACCACATTAGTTGACATATATGGGAAGTCGGGGAGATTTAATGATGCAATAGAGTGCTTGGAGATAATGAAGTCTGCAGGCATGAAACCATCCCCGACAATGTATAATGCCTTGATTAATGCCTATGCTCAAAGGGTAAGTTGTCTTCTCTACACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

587

Amino Acids

65.27

Weight (kDa)

6.04

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	171 - 271	3.6e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	181 - 224	9e-08	PPR repeat family
PPR	PF01535	181 - 209	3.6e-08	PPR repeat
PPR_long	PF17177	230 - 371	7.4e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	308 - 368	2.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	321 - 368	5e-13	PPR repeat family
TPR_24	PF23276	341 - 451	2.7e-11	Fungal tetratrico peptide repeats
PPR_long	PF17177	343 - 426	5.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	351 - 383	3.5e-06	PPR repeat
PPR_2	PF13041	359 - 396	4.1e-06	PPR repeat family
PPR_3	PF13812	378 - 438	2e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	392 - 486	6.6e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	429 - 463	1.4e-06	PPR repeat family
PPR_long	PF17177	430 - 577	5.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	450 - 508	3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	456 - 488	8.9e-12	PPR repeat
PPR_2	PF13041	459 - 506	2.1e-16	PPR repeat family
PPR	PF01535	462 - 492	2.2e-10	PPR repeat
PPR_2	PF13041	494 - 539	7.8e-10	PPR repeat family
PPR_3	PF13812	519 - 578	1.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	526 - 558	1.4e-07	PPR repeat
PPR_2	PF13041	529 - 577	6e-11	PPR repeat family
PPR	PF01535	532 - 561	4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	160, 284
AccII	CGCG	6 cut(s)	95, 401, 473, 563, 1124, 1478
AciI	CCGC	9 cut(s)	73, 105, 120, 189, 199, 520, 858, 872, 914
AcoI	YGGCCR	2 cut(s)	294, 309
AcyI	GRCGYC	3 cut(s)	157, 272, 281
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	6 cut(s)	20, 342, 589, 1113, 1350, 1435
AgsI	TTSAA	5 cut(s)	47, 388, 1138, 1235, 1349
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	8 cut(s)	19, 183, 582, 608, 618, 654, 804, 1388
AleI	CACNNNNGTG	1 cut(s)	866
Alw21I	GWGCWC	2 cut(s)	450, 1071
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	8 cut(s)	186, 294, 309, 324, 333, 393, 1423, 1549
ApeKI	GCWGC	3 cut(s)	757, 1001, 1162
AseI	ATTAAT	1 cut(s)	1719
AspS9I	GGNCC	3 cut(s)	324, 334, 1549
AsuC2I	CCSGG	3 cut(s)	293, 323, 332
AsuHPI	GGTGA	1 cut(s)	1050
AsuNHI	GCTAGC	1 cut(s)	1151
AxyI	CCTNAGG	1 cut(s)	1516
BanII	GRGCYC	3 cut(s)	450, 801, 851
BarI	GAAGNNNNNNTAC	2 cut(s)	1731, 1763
BbsI	GAAGAC	1 cut(s)	1739
Bbv12I	GWGCWC	2 cut(s)	450, 1071
BbvI	GCAGC	3 cut(s)	744, 1013, 1174
BccI	CCATC	7 cut(s)	46, 467, 743, 1033, 1138, 1527, 1699
BceAI	ACGGC	4 cut(s)	176, 274, 311, 592
BciT130I	CCWGG	8 cut(s)	21, 185, 584, 610, 620, 656, 806, 1390
BciVI	GTATCC	1 cut(s)	1372
BclI	TGATCA	1 cut(s)	1327
BcnI	CCSGG	3 cut(s)	293, 323, 332
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	4 cut(s)	837, 963, 1152, 1197
BfmI	CTRYAG	1 cut(s)	1677
BfoI	RGCGCY	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	1372
BglI	GCCNNNNNGGC	2 cut(s)	332, 1276
BisI	GCNGC	5 cut(s)	189, 521, 758, 1002, 1163
BlsI	GCNGC	5 cut(s)	190, 522, 759, 1003, 1164
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	324, 334, 1549
BmiI	GGNNCC	3 cut(s)	25, 336, 416
BmsI	GCATC	6 cut(s)	603, 1006, 1081, 1344, 1554, 1636
BmtI	GCTAGC	1 cut(s)	1155
BpiI	GAAGAC	1 cut(s)	1739
BpmI	CTGGAG	2 cut(s)	401, 605
BpuMI	CCSGG	3 cut(s)	293, 323, 332
BsaBI	GATNNNNATC	2 cut(s)	37, 68
BsaHI	GRCGYC	3 cut(s)	157, 272, 281
BsaJI	CCNNGG	2 cut(s)	825, 956
BsaWI	WCCGGW	2 cut(s)	896, 1060
BsaXI	ACNNNNNCTCC	4 cut(s)	517, 547, 713, 743
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 342, 589, 1113, 1350, 1435
Bse118I	RCCGGY	2 cut(s)	791, 1106
Bse21I	CCTNAGG	1 cut(s)	1516
Bse3DI	GCAATG	1 cut(s)	1162
Bse8I	GATNNNNATC	2 cut(s)	37, 68
BseBI	CCWGG	8 cut(s)	21, 185, 584, 610, 620, 656, 806, 1390
BseDI	CCNNGG	2 cut(s)	825, 956
BseJI	GATNNNNATC	2 cut(s)	37, 68
BseLI	CCNNNNNNNGG	6 cut(s)	20, 342, 589, 1113, 1350, 1435
BseMI	GCAATG	1 cut(s)	1162
BseMII	CTCAG	2 cut(s)	530, 723
BsePI	GCGCGC	1 cut(s)	1476
BseX3I	CGGCCG	1 cut(s)	294
BseXI	GCAGC	3 cut(s)	744, 1013, 1174
BseYI	CCCAGC	1 cut(s)	800
BsgI	GTGCAG	2 cut(s)	851, 1181
Bsh1236I	CGCG	6 cut(s)	95, 401, 473, 563, 1124, 1478
Bsh1285I	CGRYCG	2 cut(s)	297, 635
BshFI	GGCC	8 cut(s)	188, 296, 311, 326, 335, 395, 1425, 1551
BsiEI	CGRYCG	2 cut(s)	297, 635
BsiHKAI	GWGCWC	2 cut(s)	450, 1071
BsiSI	CCGG	8 cut(s)	293, 322, 332, 792, 897, 1061, 1107, 1376
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	6 cut(s)	20, 342, 589, 1113, 1350, 1435
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	8 cut(s)	188, 296, 311, 326, 335, 395, 1425, 1551
Bsp1286I	GDGCHC	4 cut(s)	450, 801, 851, 1071
Bsp143I	GATC	2 cut(s)	632, 1327
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	9 cut(s)	73, 105, 120, 189, 199, 520, 858, 872, 914
BspANI	GGCC	8 cut(s)	188, 296, 311, 326, 335, 395, 1425, 1551
BspCNI	CTCAG	2 cut(s)	529, 724
BspFNI	CGCG	6 cut(s)	95, 401, 473, 563, 1124, 1478
BspHI	TCATGA	2 cut(s)	253, 1503
BspLI	GGNNCC	3 cut(s)	25, 336, 416
BspMAI	CTGCAG	1 cut(s)	1681
BspOI	GCTAGC	1 cut(s)	1155
BsrDI	GCAATG	1 cut(s)	1162
BsrFI	RCCGGY	2 cut(s)	791, 1106
BssAI	RCCGGY	2 cut(s)	791, 1106
BssECI	CCNNGG	2 cut(s)	825, 956
BssHII	GCGCGC	1 cut(s)	1476
BssMI	GATC	2 cut(s)	632, 1327
BssNI	GRCGYC	3 cut(s)	157, 272, 281
BssT1I	CCWWGG	1 cut(s)	825
Bst2UI	CCWGG	8 cut(s)	21, 185, 584, 610, 620, 656, 806, 1390
Bst4CI	ACNGT	2 cut(s)	626, 1384
BstACI	GRCGYC	3 cut(s)	157, 272, 281
BstC8I	GCNNGC	9 cut(s)	309, 565, 571, 793, 797, 834, 1153, 1478, 1681
BstDEI	CTNAG	3 cut(s)	516, 732, 1516
BstDSI	CCRYGG	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	626
BstENI	CCTNNNNNAGG	2 cut(s)	587, 1348
BstFNI	CGCG	6 cut(s)	95, 401, 473, 563, 1124, 1478
BstH2I	RGCGCY	1 cut(s)	596
BstKTI	GATC	2 cut(s)	635, 1330
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	632, 1327
BstMCI	CGRYCG	2 cut(s)	297, 635
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 332, 421, 517, 801, 974, 1276, 1484
BstNI	CCWGG	8 cut(s)	21, 185, 584, 610, 620, 656, 806, 1390
BstPI	GGTNACC	1 cut(s)	626
BstSFI	CTRYAG	1 cut(s)	1677
BstUI	CGCG	6 cut(s)	95, 401, 473, 563, 1124, 1478
BstV1I	GCAGC	3 cut(s)	744, 1013, 1174
BstV2I	GAAGAC	1 cut(s)	1739
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstZI	CGGCCG	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	1516
BsuI	GTATCC	1 cut(s)	1372
BsuRI	GGCC	8 cut(s)	188, 296, 311, 326, 335, 395, 1425, 1551
BtgI	CCRYGG	1 cut(s)	825
BtsI	GCAGTG	2 cut(s)	977, 1264
BtsIMutI	CAGTG	2 cut(s)	977, 1264
Cac8I	GCNNGC	9 cut(s)	309, 565, 571, 793, 797, 834, 1153, 1478, 1681
CciI	TCATGA	2 cut(s)	253, 1503
Cfr10I	RCCGGY	2 cut(s)	791, 1106
Cfr13I	GGNCC	3 cut(s)	324, 334, 1549
CseI	GACGC	2 cut(s)	261, 489
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	1594, 1629
CviAII	CATG	6 cut(s)	254, 826, 1331, 1430, 1504, 1684
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	3 cut(s)	516, 732, 1516
DpnI	GATC	2 cut(s)	634, 1329
DpnII	GATC	2 cut(s)	632, 1327
DriI	GACNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	2 cut(s)	294, 309
EagI	CGGCCG	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EciI	GGCGGA	4 cut(s)	62, 94, 109, 929
Ecl136II	GAGCTC	1 cut(s)	448
EclXI	CGGCCG	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	825
Eco147I	AGGCCT	1 cut(s)	395
Eco24I	GRGCYC	3 cut(s)	450, 801, 851
Eco52I	CGGCCG	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	448
Eco81I	CCTNAGG	1 cut(s)	1516
Eco91I	GGTNACC	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	2 cut(s)	587, 1348
EcoO109I	RGGNCCY	1 cut(s)	1549
EcoO65I	GGTNACC	1 cut(s)	626
EcoRII	CCWGG	8 cut(s)	19, 183, 582, 608, 618, 654, 804, 1388
EcoT14I	CCWWGG	1 cut(s)	825
EcoT22I	ATGCAT	1 cut(s)	816
EcoT38I	GRGCYC	3 cut(s)	450, 801, 851
ErhI	CCWWGG	1 cut(s)	825
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	6 cut(s)	257, 829, 1334, 1433, 1507, 1687
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	6 cut(s)	253, 825, 1330, 1429, 1503, 1683
FauI	CCCGC	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	1327
Fnu4HI	GCNGC	5 cut(s)	189, 521, 758, 1002, 1163
FriOI	GRGCYC	3 cut(s)	450, 801, 851
Fsp4HI	GCNGC	5 cut(s)	189, 521, 758, 1002, 1163
FspBI	CTAG	4 cut(s)	837, 963, 1152, 1197
GluI	GCNGC	5 cut(s)	189, 521, 758, 1002, 1163
GsaI	CCCAGC	1 cut(s)	804
GsuI	CTGGAG	2 cut(s)	401, 605
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	8 cut(s)	188, 296, 311, 326, 335, 395, 1425, 1551
HapII	CCGG	8 cut(s)	293, 322, 332, 792, 897, 1061, 1107, 1376
HgaI	GACGC	2 cut(s)	261, 489
Hin1I	GRCGYC	3 cut(s)	157, 272, 281
Hin1II	CATG	6 cut(s)	257, 829, 1334, 1433, 1507, 1687
HincII	GTYRAC	3 cut(s)	531, 540, 1615
HindII	GTYRAC	3 cut(s)	531, 540, 1615
HindIII	AAGCTT	1 cut(s)	710
HpaII	CCGG	8 cut(s)	293, 322, 332, 792, 897, 1061, 1107, 1376
HphI	GGTGA	1 cut(s)	1050
Hpy166II	GTNNAC	4 cut(s)	531, 540, 1580, 1615
Hpy188I	TCNGA	7 cut(s)	63, 479, 487, 637, 733, 1363, 1587
Hpy188III	TCNNGA	8 cut(s)	153, 254, 418, 643, 1205, 1325, 1504, 1761
Hpy8I	GTNNAC	4 cut(s)	531, 540, 1580, 1615
Hpy99I	CGWCG	4 cut(s)	159, 162, 277, 283
HpyAV	CCTTC	5 cut(s)	235, 583, 991, 1132, 1540
HpyCH4III	ACNGT	2 cut(s)	626, 1384
HpyCH4IV	ACGT	3 cut(s)	157, 281, 527
HpyCH4V	TGCA	9 cut(s)	814, 832, 952, 977, 1162, 1462, 1567, 1649, 1679
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 332, 421, 517, 801, 974, 1276, 1484
HpyF3I	CTNAG	3 cut(s)	516, 732, 1516
HpySE526I	ACGT	3 cut(s)	157, 281, 527
Hsp92I	GRCGYC	3 cut(s)	157, 272, 281
Hsp92II	CATG	6 cut(s)	257, 829, 1334, 1433, 1507, 1687
KroI	GCCGGC	1 cut(s)	791
KroNI	GCCGGC	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	1327
Kzo9I	GATC	2 cut(s)	632, 1327
LmnI	GCTCC	8 cut(s)	217, 251, 374, 420, 453, 488, 1254, 1522
Lsp1109I	GCAGC	3 cut(s)	744, 1013, 1174
LweI	GCATC	6 cut(s)	603, 1006, 1081, 1344, 1554, 1636
MaeI	CTAG	4 cut(s)	837, 963, 1152, 1197
MaeII	ACGT	3 cut(s)	157, 281, 527
MaeIII	GTNAC	5 cut(s)	282, 626, 1032, 1384, 1594
MalI	GATC	2 cut(s)	634, 1329
MboI	GATC	2 cut(s)	632, 1327
MboII	GAAGA	5 cut(s)	45, 79, 1025, 1573, 1739
MhlI	GDGCHC	4 cut(s)	450, 801, 851, 1071
MluCI	AATT	9 cut(s)	47, 141, 598, 646, 660, 699, 1128, 1168, 1318
MlyI	GAGTC	5 cut(s)	260, 323, 526, 737, 1579
Mph1103I	ATGCAT	1 cut(s)	816
MroNI	GCCGGC	1 cut(s)	791
MseI	TTAA	5 cut(s)	672, 707, 1497, 1641, 1719
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	3 cut(s)	307, 520, 757
MspI	CCGG	8 cut(s)	293, 322, 332, 792, 897, 1061, 1107, 1376
MvaI	CCWGG	8 cut(s)	21, 185, 584, 610, 620, 656, 806, 1390
MvnI	CGCG	6 cut(s)	95, 401, 473, 563, 1124, 1478
MwoI	GCNNNNNNNGC	8 cut(s)	10, 332, 421, 517, 801, 974, 1276, 1484
NaeI	GCCGGC	1 cut(s)	793
NciI	CCSGG	3 cut(s)	293, 323, 332
NcoI	CCATGG	1 cut(s)	825
NdeII	GATC	2 cut(s)	632, 1327
NgoMIV	GCCGGC	1 cut(s)	791
NheI	GCTAGC	1 cut(s)	1151
NlaIII	CATG	6 cut(s)	257, 829, 1334, 1433, 1507, 1687
NlaIV	GGNNCC	3 cut(s)	25, 336, 416
NmeAIII	GCCGAG	3 cut(s)	248, 322, 337
NmuCI	GTSAC	2 cut(s)	282, 1032
NsiI	ATGCAT	1 cut(s)	816
OliI	CACNNNNGTG	1 cut(s)	866
PagI	TCATGA	2 cut(s)	253, 1503
PauI	GCGCGC	1 cut(s)	1476
PceI	AGGCCT	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	4 cut(s)	275, 294, 483, 533
PdiI	GCCGGC	1 cut(s)	793
PfeI	GAWTC	5 cut(s)	33, 125, 692, 1022, 1369
PfoI	TCCNGGA	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	190, 522, 759, 1003, 1164
Ple19I	CGATCG	1 cut(s)	635
PleI	GAGTC	5 cut(s)	260, 322, 526, 736, 1578
PpsI	GAGTC	5 cut(s)	260, 322, 526, 736, 1578
PshBI	ATTAAT	1 cut(s)	1719
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	8 cut(s)	19, 183, 582, 608, 618, 654, 804, 1388
PspEI	GGTNACC	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	8 cut(s)	19, 183, 582, 608, 618, 654, 804, 1388
PspN4I	GGNNCC	3 cut(s)	25, 336, 416
PspPI	GGNCC	3 cut(s)	324, 334, 1549
PstI	CTGCAG	1 cut(s)	1681
PteI	GCGCGC	1 cut(s)	1476
PvuI	CGATCG	1 cut(s)	635
PvuII	CAGCTG	2 cut(s)	307, 757
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	866
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	5 cut(s)	672, 707, 1497, 1641, 1719
SatI	GCNGC	5 cut(s)	189, 521, 758, 1002, 1163
Sau3AI	GATC	2 cut(s)	632, 1327
Sau96I	GGNCC	3 cut(s)	324, 334, 1549
SchI	GAGTC	5 cut(s)	260, 323, 526, 737, 1579
SduI	GDGCHC	4 cut(s)	450, 801, 851, 1071
SfaNI	GCATC	6 cut(s)	603, 1006, 1081, 1344, 1554, 1636
SfcI	CTRYAG	1 cut(s)	1677
SfiI	GGCCNNNNNGGCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	866
Sse9I	AATT	9 cut(s)	47, 141, 598, 646, 660, 699, 1128, 1168, 1318
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	9 cut(s)	73, 105, 120, 189, 199, 520, 858, 872, 914
SspMI	CTAG	4 cut(s)	837, 963, 1152, 1197
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	2 cut(s)	626, 1384
TaiI	ACGT	3 cut(s)	160, 284, 530
TaqI	TCGA	2 cut(s)	288, 927
TasI	AATT	9 cut(s)	47, 141, 598, 646, 660, 699, 1128, 1168, 1318
TauI	GCSGC	2 cut(s)	191, 523
TfiI	GAWTC	5 cut(s)	33, 125, 692, 1022, 1369
Tru1I	TTAA	5 cut(s)	672, 707, 1497, 1641, 1719
Tru9I	TTAA	5 cut(s)	672, 707, 1497, 1641, 1719
TscAI	CASTG	2 cut(s)	984, 1264
TseFI	GTSAC	2 cut(s)	282, 1032
TseI	GCWGC	3 cut(s)	757, 1001, 1162
Tsp45I	GTSAC	2 cut(s)	282, 1032
TspDTI	ATGAA	5 cut(s)	135, 950, 1554, 1685, 1700
TspGWI	ACGGA	2 cut(s)	31, 525
TspRI	CASTG	2 cut(s)	984, 1264
VspI	ATTAAT	1 cut(s)	1719
XagI	CCTNNNNNAGG	2 cut(s)	587, 1348
XspI	CTAG	4 cut(s)	837, 963, 1152, 1197
ZraI	GACGTC	2 cut(s)	158, 282
Zsp2I	ATGCAT	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.