Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005693

Physical Location & Seq

Genomic Coordinates Forward (+)

17329275 .. 17331352

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAATGCAGCTTTGTCAAGTCCGAGAGGAACTAGCATTGCTAGAGGTTTAAGCCCTTCGAGAGAGGTTGTTCCTCCAAGAGGGGTTAGTCCTTCAGATAGAATGAGTCCACTAAGAGTGAGAAGCTCACTGAGTAAAAACACGCCTTTGATTCCGCATTTTGCTGTGGATGGTAAAGAGAAGATCAGAGATAATGGGGTTGCTGATGCTCACTTGTTAAGGCTATTACACAGTAGGTTGCTGCAATGGCAATTTGCTAATGCACGAGCAAATGCTGTTATCTCTTCACAAAAGATGAGAGAGGAGAGAAGACTGTACAATGCATGGAGAAGTATCTCTAATCTGTATAATTCTGTCAGCATGAAAAGAATTGAAATGCAGCACCTGAAGCAGAATTTGAAACTGATATCTATCCTCAATATGCAGATGGGACATCTAGAAGAGTGGTTGGTTATTGATCGGAATTATATGGGTTCTTTGGTAGGAGCTGCTGAAGCTTTGAAAGGCAGCACCCTTTGTCTACCTGTTGATTGCGGGGCAATGGTAAATGTACAAAGTGTTAAGGATGCCATTTGTTCAGCAGTTGATGTTATGCAAGCAATGGCATCTTCCATATGCTTGTTGCTGCCAAAGGTTGGGAAAATAAGTAGCTTGGCAGCAGAACTTGGCCGTGTGAATGCCAAGGACGAAGGGATGCTCGACGTGTGCCGGGACCTTCTAAACACAATCTCAGCTCTGCAGGTAACAGAATGCAGTTTGAGGACACAGGTTACACAGCTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

261

Amino Acids

28.7

Weight (kDa)

9.58

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QWRF	PF04484	12 - 234	2.1e-75	QWRF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49890 AT3G19570 AT3G19570 AT3G19570 AT3G19570 AT5G43160 AT5G43160
fragaria_vesca	FvH4_2g04080
malus_domestica	MD05G1097600.v1.1 MD05G1097800.v1.1 MD10G1103300.v1.1 MD11G1142200.v1.1
prunus_persica	Prupe.8G142000_v2.0.a1
pyrus_communis	pycom05g09590 pycom10g08900
rosa_chinensis	RchiOBHm_Chr6g0253431
rosa_laevigata	RLG00000015019
rosa_multiflora	Rmu_co7961360.1_g000001 Rmu_sc0001257.1_g000035 Rmu_sc0005426.1_g000013 Rmu_sc0025911.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211890
rosa_rugosa	Rorug05G0544200
rosa_samantha	Rh6AG059200 Rh6BG052700 Rh6CG050400 Rh6DG047100
rosa_wichuraiana	Rw0G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	730
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	520
AciI	CCGC	2 cut(s)	155, 534
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	3 cut(s)	78, 407, 513
AfaI	GTAC	2 cut(s)	317, 552
AfiI	CCNNNNNNNGG	2 cut(s)	80, 635
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	3 cut(s)	374, 400, 502
AjiI	CACGTC	1 cut(s)	703
AluBI	AGCT	7 cut(s)	11, 126, 488, 497, 651, 734, 778
AluI	AGCT	7 cut(s)	11, 126, 488, 497, 651, 734, 778
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	1 cut(s)	667
ApeKI	GCWGC	7 cut(s)	8, 241, 379, 488, 507, 625, 656
ApoI	RAATTY	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	712
AsuC2I	CCSGG	1 cut(s)	710
AvaII	GGWCC	1 cut(s)	712
BauI	CACGAG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	316
BbvI	GCAGC	7 cut(s)	20, 228, 391, 475, 519, 612, 668
BccI	CCATC	2 cut(s)	164, 421
BceAI	ACGGC	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	710
BfaI	CTAG	3 cut(s)	33, 42, 437
BfmI	CTRYAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	730
BisI	GCNGC	7 cut(s)	9, 242, 380, 489, 508, 626, 657
BlsI	GCNGC	7 cut(s)	10, 243, 381, 490, 509, 627, 658
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	712
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	1 cut(s)	713
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	4 cut(s)	196, 556, 614, 684
BpiI	GAAGAC	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 635
Bse3DI	GCAATG	4 cut(s)	36, 251, 546, 606
Bse8I	GATNNNNATC	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	3 cut(s)	175, 571, 699
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	80, 635
BseMI	GCAATG	4 cut(s)	36, 251, 546, 606
BseMII	CTCAG	2 cut(s)	122, 744
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	7 cut(s)	20, 228, 391, 475, 519, 612, 668
BshFI	GGCC	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	709
BslFI	GGGAC	2 cut(s)	444, 725
BslI	CCNNNNNNNGG	2 cut(s)	80, 635
BsmFI	GGGAC	2 cut(s)	444, 725
BsmI	GAATGC	3 cut(s)	10, 682, 755
BsnI	GGCC	1 cut(s)	669
Bsp1407I	TGTACA	2 cut(s)	315, 550
Bsp143I	GATC	2 cut(s)	183, 457
BspACI	CCGC	2 cut(s)	155, 534
BspANI	GGCC	1 cut(s)	669
BspCNI	CTCAG	2 cut(s)	123, 743
BspLI	GGNNCC	1 cut(s)	713
BspMAI	CTGCAG	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	730
BsrDI	GCAATG	4 cut(s)	36, 251, 546, 606
BsrGI	TGTACA	2 cut(s)	315, 550
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	2 cut(s)	183, 457
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	233, 315
Bst6I	CTCTTC	2 cut(s)	289, 435
BstAUI	TGTACA	2 cut(s)	315, 550
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	3 cut(s)	113, 131, 730
BstENI	CCTNNNNNAGG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	175, 571, 699
BstKTI	GATC	2 cut(s)	186, 460
BstMBI	GATC	2 cut(s)	183, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 388, 494
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	1 cut(s)	737
BstV1I	GCAGC	7 cut(s)	20, 228, 391, 475, 519, 612, 668
BstV2I	GAAGAC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	669
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	175, 571, 699
BtsIMutI	CAGTG	1 cut(s)	128
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	1 cut(s)	597
CaiI	CAGNNNCTG	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	712
Csp6I	GTAC	2 cut(s)	316, 551
CviAII	CATG	2 cut(s)	324, 361
CviQI	GTAC	2 cut(s)	316, 551
DdeI	CTNAG	3 cut(s)	113, 131, 730
DpnI	GATC	2 cut(s)	185, 459
DpnII	GATC	2 cut(s)	183, 457
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	289, 435
EarI	CTCTTC	2 cut(s)	289, 435
Eco130I	CCWWGG	1 cut(s)	681
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	712
Eco57I	CTGAAG	3 cut(s)	78, 407, 513
EcoNI	CCTNNNNNAGG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	681
EcoT22I	ATGCAT	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	2 cut(s)	327, 364
FaiI	YATR	9 cut(s)	325, 348, 362, 422, 468, 470, 593, 614, 616
FaqI	GGGAC	2 cut(s)	444, 725
FatI	CATG	2 cut(s)	323, 360
FauI	CCCGC	1 cut(s)	527
FauNDI	CATATG	1 cut(s)	614
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	7 cut(s)	9, 242, 380, 489, 508, 626, 657
FokI	GGATG	3 cut(s)	182, 578, 706
Fsp4HI	GCNGC	7 cut(s)	9, 242, 380, 489, 508, 626, 657
FspBI	CTAG	3 cut(s)	33, 42, 437
GluI	GCNGC	7 cut(s)	9, 242, 380, 489, 508, 626, 657
HaeIII	GGCC	1 cut(s)	669
HapII	CCGG	1 cut(s)	709
Hin1II	CATG	2 cut(s)	327, 364
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	2 cut(s)	106, 151
HpaII	CCGG	1 cut(s)	709
Hpy166II	GTNNAC	2 cut(s)	110, 521
Hpy188I	TCNGA	4 cut(s)	24, 97, 188, 462
Hpy188III	TCNNGA	2 cut(s)	60, 437
Hpy8I	GTNNAC	2 cut(s)	110, 521
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	4 cut(s)	66, 102, 683, 725
HpyCH4III	ACNGT	2 cut(s)	233, 315
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	9 cut(s)	8, 244, 263, 323, 379, 424, 595, 739, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 388, 494
HpyF3I	CTNAG	3 cut(s)	113, 131, 730
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	2 cut(s)	327, 364
Kzo9I	GATC	2 cut(s)	183, 457
LmnI	GCTCC	1 cut(s)	485
LpnPI	CCDG	5 cut(s)	398, 537, 722, 725, 752
Lsp1109I	GCAGC	7 cut(s)	20, 228, 391, 475, 519, 612, 668
LweI	GCATC	4 cut(s)	196, 556, 614, 684
MaeI	CTAG	3 cut(s)	33, 42, 437
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	742, 769
MalI	GATC	2 cut(s)	185, 459
MboI	GATC	2 cut(s)	183, 457
MboII	GAAGA	5 cut(s)	193, 276, 321, 452, 600
MluCI	AATT	5 cut(s)	251, 349, 369, 394, 463
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	8 cut(s)	20, 38, 58, 74, 84, 295, 425, 753
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	3 cut(s)	50, 218, 561
MspI	CCGG	1 cut(s)	709
MspR9I	CCNGG	1 cut(s)	710
Mva1269I	GAATGC	3 cut(s)	10, 682, 755
MwoI	GCNNNNNNNGC	3 cut(s)	247, 388, 494
NciI	CCSGG	1 cut(s)	710
NdeI	CATATG	1 cut(s)	614
NdeII	GATC	2 cut(s)	183, 457
NlaIII	CATG	2 cut(s)	327, 364
NlaIV	GGNNCC	1 cut(s)	713
NsiI	ATGCAT	1 cut(s)	325
PctI	GAATGC	3 cut(s)	10, 682, 755
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	7 cut(s)	10, 243, 381, 490, 509, 627, 658
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	712
Psp5II	RGGWCCY	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	713
PspPI	GGNCC	1 cut(s)	712
PspPPI	RGGWCCY	1 cut(s)	712
PstI	CTGCAG	1 cut(s)	741
PstNI	CAGNNNCTG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	317, 552
RsaNI	GTAC	2 cut(s)	316, 551
SaqAI	TTAA	3 cut(s)	50, 218, 561
SatI	GCNGC	7 cut(s)	9, 242, 380, 489, 508, 626, 657
Sau3AI	GATC	2 cut(s)	183, 457
Sau96I	GGNCC	1 cut(s)	712
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	710
SfaNI	GCATC	4 cut(s)	196, 556, 614, 684
SfcI	CTRYAG	1 cut(s)	737
SinI	GGWCC	1 cut(s)	712
Sse9I	AATT	5 cut(s)	251, 349, 369, 394, 463
SsiI	CCGC	2 cut(s)	155, 534
SspMI	CTAG	3 cut(s)	33, 42, 437
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	233, 315
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	2 cut(s)	59, 699
TasI	AATT	5 cut(s)	251, 349, 369, 394, 463
TatI	WGTACW	2 cut(s)	315, 550
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	50, 218, 561
Tru9I	TTAA	3 cut(s)	50, 218, 561
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	7 cut(s)	8, 241, 379, 488, 507, 625, 656
TspDTI	ATGAA	2 cut(s)	17, 377
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	712
XagI	CCTNNNNNAGG	1 cut(s)	78
XapI	RAATTY	1 cut(s)	394
XbaI	TCTAGA	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	520
XspI	CTAG	3 cut(s)	33, 42, 437
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.