Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025911.1

Orthogroup ID

OG0005693

Physical Location & Seq

Genomic Coordinates Forward (+)

85 .. 759

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggtggctgccatttccgacccgacccatctccagacccaatctcggccgccgcttcttccctcagacaatgcctcctccgccgccgttcaacgacgcgtcgtcctccgcggcaggcaggtctcctccaagtacatgtccactccttctccttcttcttcaaactcgacttctacctctactacagtctcctcctccgcttcttcgaggagatgcccttcgccgctgctctcgcggtcgatgaactcgtctccggcgccgaattcgggcccgaagcgggcccaatcggccgaccggaggcgacccggtacggcccggaccataccggagcaccggctgagcaatgcgggttccgaagtctccgccgccaccagactcctcgtcacctccacccggagcctctcggtttcgtttcagggcgaggcgttctcgctgccgattagtaagaccaaggcggcggccgcggcggcaggggctgctccggcgaggaaggccacgccggagaggcggaggtcgacgccggtgagaagagaaggagatcaggtggagaattctaggccctccggcggtggtgatcagcaccggtggccggcgaggagtcggcaaccgaattcgaattcgggttattcgaacccgaatttgagtaggagtatggactgtagtagtgtggagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

225

Amino Acids

23.78

Weight (kDa)

11.71

Isoelectric Point (pI)

87.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49890 AT3G19570 AT3G19570 AT3G19570 AT3G19570 AT5G43160 AT5G43160
fragaria_vesca	FvH4_2g04080
malus_domestica	MD05G1097600.v1.1 MD05G1097800.v1.1 MD10G1103300.v1.1 MD11G1142200.v1.1
prunus_persica	Prupe.8G142000_v2.0.a1
pyrus_communis	pycom05g09590 pycom10g08900
rosa_chinensis	RchiOBHm_Chr6g0253431
rosa_laevigata	RLG00000015019
rosa_multiflora	Rmu_co7961360.1_g000001 Rmu_sc0001257.1_g000035 Rmu_sc0005426.1_g000013 Rmu_sc0025911.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211890
rosa_rugosa	Rorug05G0544200
rosa_samantha	Rh6AG059200 Rh6BG052700 Rh6CG050400 Rh6DG047100
rosa_wichuraiana	Rw0G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	515
AccII	CGCG	4 cut(s)	99, 111, 235, 464
AcoI	YGGCCR	4 cut(s)	47, 288, 459, 587
AcsI	RAATTY	5 cut(s)	262, 550, 610, 616, 637
AcyI	GRCGYC	2 cut(s)	257, 518
AfaI	GTAC	2 cut(s)	134, 310
AfiI	CCNNNNNNNGG	7 cut(s)	45, 266, 277, 297, 393, 566, 589
AflIII	ACRYGT	2 cut(s)	97, 135
AgeI	ACCGGT	1 cut(s)	582
AgsI	TTSAA	2 cut(s)	92, 162
AhdI	GACNNNNNGTC	2 cut(s)	101, 380
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	4 cut(s)	127, 193, 255, 364
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	9 cut(s)	47, 268, 279, 288, 312, 459, 492, 557, 587
ApaI	GGGCCC	2 cut(s)	272, 283
ApeKI	GCWGC	4 cut(s)	8, 226, 433, 476
ApoI	RAATTY	5 cut(s)	262, 550, 610, 616, 637
AsiGI	ACCGGT	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	7 cut(s)	268, 269, 279, 280, 313, 318, 558
AsuC2I	CCSGG	3 cut(s)	306, 316, 394
AsuHPI	GGTGA	3 cut(s)	376, 535, 584
AsuII	TTCGAA	2 cut(s)	614, 629
AvaII	GGWCC	1 cut(s)	318
BaeGI	GKGCMC	2 cut(s)	272, 283
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	2 cut(s)	272, 283
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	213, 420, 463
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	2 cut(s)	71, 327
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	3 cut(s)	306, 316, 394
BcoDI	GTCTC	4 cut(s)	127, 193, 255, 364
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	2 cut(s)	183, 658
BfoI	RGCGCY	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	109
BglI	GCCNNNNNGGC	3 cut(s)	287, 467, 505
BlpI	GCTNAGC	1 cut(s)	338
Bme1390I	CCNGG	3 cut(s)	306, 316, 394
Bme18I	GGWCC	1 cut(s)	318
BmeRI	GACNNNNNGTC	2 cut(s)	101, 380
BmgT120I	GGNCC	7 cut(s)	268, 269, 279, 280, 313, 318, 558
BmiI	GGNNCC	5 cut(s)	258, 270, 281, 352, 398
BmrFI	CCNGG	3 cut(s)	306, 316, 394
BmsI	GCATC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	17
Bpu1102I	GCTNAGC	1 cut(s)	338
Bpu14I	TTCGAA	2 cut(s)	614, 629
BpuMI	CCSGG	3 cut(s)	306, 316, 394
BsaHI	GRCGYC	2 cut(s)	257, 518
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	109, 450, 462
BsaWI	WCCGGW	3 cut(s)	294, 325, 582
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 133, 163, 528, 558
Bsc4I	CCNNNNNNNGG	7 cut(s)	45, 266, 277, 297, 393, 566, 589
Bse118I	RCCGGY	4 cut(s)	333, 520, 582, 589
Bse3DI	GCAATG	1 cut(s)	349
BseDI	CCNNGG	3 cut(s)	109, 450, 462
BseLI	CCNNNNNNNGG	7 cut(s)	45, 266, 277, 297, 393, 566, 589
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	78, 329
BseRI	GAGGAG	7 cut(s)	67, 115, 181, 184, 223, 368, 610
BseSI	GKGCMC	2 cut(s)	272, 283
BseX3I	CGGCCG	3 cut(s)	47, 288, 459
BseXI	GCAGC	3 cut(s)	213, 420, 463
Bsh1236I	CGCG	4 cut(s)	99, 111, 235, 464
Bsh1285I	CGRYCG	5 cut(s)	50, 239, 291, 295, 462
BshFI	GGCC	9 cut(s)	49, 270, 281, 290, 314, 461, 494, 559, 589
BshNI	GGYRCC	1 cut(s)	256
BshTI	ACCGGT	1 cut(s)	582
BsiEI	CGRYCG	5 cut(s)	50, 239, 291, 295, 462
BsiHKAI	GWGCWC	1 cut(s)	333
BslI	CCNNNNNNNGG	7 cut(s)	45, 266, 277, 297, 393, 566, 589
BsmAI	GTCTC	4 cut(s)	127, 193, 255, 364
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	9 cut(s)	49, 270, 281, 290, 314, 461, 494, 559, 589
Bso31I	GGTCTC	1 cut(s)	127
Bsp119I	TTCGAA	2 cut(s)	614, 629
Bsp120I	GGGCCC	2 cut(s)	268, 279
Bsp1286I	GDGCHC	3 cut(s)	272, 283, 333
Bsp143I	GATC	2 cut(s)	538, 574
Bsp1720I	GCTNAGC	1 cut(s)	338
BspANI	GGCC	9 cut(s)	49, 270, 281, 290, 314, 461, 494, 559, 589
BspCNI	CTCAG	2 cut(s)	77, 330
BspFNI	CGCG	4 cut(s)	99, 111, 235, 464
BspLI	GGNNCC	5 cut(s)	258, 270, 281, 352, 398
BspMI	ACCTGC	1 cut(s)	109
BspT104I	TTCGAA	2 cut(s)	614, 629
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	349
BsrFI	RCCGGY	4 cut(s)	333, 520, 582, 589
BssAI	RCCGGY	4 cut(s)	333, 520, 582, 589
BssECI	CCNNGG	3 cut(s)	109, 450, 462
BssMI	GATC	2 cut(s)	538, 574
BssNI	GRCGYC	2 cut(s)	257, 518
BssT1I	CCWWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	187, 659
Bst6I	CTCTTC	1 cut(s)	523
BstACI	GRCGYC	2 cut(s)	257, 518
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstBI	TTCGAA	2 cut(s)	614, 629
BstC8I	GCNNGC	3 cut(s)	116, 279, 591
BstDEI	CTNAG	2 cut(s)	64, 338
BstDSI	CCRYGG	2 cut(s)	109, 462
BstFNI	CGCG	4 cut(s)	99, 111, 235, 464
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	541, 577
BstMAI	GTCTC	4 cut(s)	127, 193, 255, 364
BstMBI	GATC	2 cut(s)	538, 574
BstMCI	CGRYCG	5 cut(s)	50, 239, 291, 295, 462
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	3 cut(s)	304, 314, 392
BstSFI	CTRYAG	2 cut(s)	183, 658
BstSLI	GKGCMC	2 cut(s)	272, 283
BstUI	CGCG	4 cut(s)	99, 111, 235, 464
BstV1I	GCAGC	3 cut(s)	213, 420, 463
BstZI	CGGCCG	3 cut(s)	47, 288, 459
BsuRI	GGCC	9 cut(s)	49, 270, 281, 290, 314, 461, 494, 559, 589
BtgI	CCRYGG	2 cut(s)	109, 462
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	3 cut(s)	116, 279, 591
CaiI	CAGNNNCTG	1 cut(s)	476
CciNI	GCGGCCGC	1 cut(s)	459
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	4 cut(s)	333, 520, 582, 589
Cfr13I	GGNCC	7 cut(s)	268, 269, 279, 280, 313, 318, 558
Cfr42I	CCGCGG	2 cut(s)	112, 465
CseI	GACGC	3 cut(s)	88, 105, 526
Csp6I	GTAC	2 cut(s)	133, 309
CspAI	ACCGGT	1 cut(s)	582
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	2 cut(s)	133, 309
DdeI	CTNAG	2 cut(s)	64, 338
DinI	GGCGCC	1 cut(s)	258
DpnI	GATC	2 cut(s)	540, 576
DpnII	GATC	2 cut(s)	538, 574
DriI	GACNNNNNGTC	2 cut(s)	101, 380
EaeI	YGGCCR	4 cut(s)	47, 288, 459, 587
EagI	CGGCCG	3 cut(s)	47, 288, 459
Eam1104I	CTCTTC	1 cut(s)	523
Eam1105I	GACNNNNNGTC	2 cut(s)	101, 380
EarI	CTCTTC	1 cut(s)	523
EciI	GGCGGA	3 cut(s)	70, 352, 523
EclXI	CGGCCG	3 cut(s)	47, 288, 459
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	2 cut(s)	272, 283
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	318
Eco52I	CGGCCG	3 cut(s)	47, 288, 459
EcoO109I	RGGNCCY	1 cut(s)	558
EcoRI	GAATTC	4 cut(s)	262, 550, 610, 616
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	2 cut(s)	272, 283
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	137, 323, 653
FatI	CATG	1 cut(s)	135
FauI	CCCGC	2 cut(s)	270, 340
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	515
FriOI	GRGCYC	2 cut(s)	272, 283
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	17
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	9 cut(s)	49, 270, 281, 290, 314, 461, 494, 559, 589
HgaI	GACGC	3 cut(s)	88, 105, 526
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	2 cut(s)	257, 518
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	2 cut(s)	375, 598
HphI	GGTGA	3 cut(s)	376, 535, 584
Hpy166II	GTNNAC	2 cut(s)	141, 516
Hpy188I	TCNGA	3 cut(s)	19, 67, 355
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	141, 516
Hpy99I	CGWCG	3 cut(s)	99, 104, 520
HpyAV	CCTTC	5 cut(s)	156, 162, 228, 484, 527
HpyCH4III	ACNGT	2 cut(s)	187, 659
HpyF3I	CTNAG	2 cut(s)	64, 338
Hsp92I	GRCGYC	2 cut(s)	257, 518
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	257
KasI	GGCGCC	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	589
KroNI	GCCGGC	1 cut(s)	591
Ksp22I	TGATCA	1 cut(s)	574
KspI	CCGCGG	2 cut(s)	112, 465
Kzo9I	GATC	2 cut(s)	538, 574
LmnI	GCTCC	3 cut(s)	328, 396, 484
Lsp1109I	GCAGC	3 cut(s)	213, 420, 463
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	540, 576
MboI	GATC	2 cut(s)	538, 574
MboII	GAAGA	5 cut(s)	50, 147, 150, 195, 540
MhlI	GDGCHC	3 cut(s)	272, 283, 333
MluCI	AATT	5 cut(s)	262, 550, 610, 616, 637
MluI	ACGCGT	1 cut(s)	97
Mly113I	GGCGCC	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	369, 607
MmeI	TCCRAC	1 cut(s)	42
MroNI	GCCGGC	1 cut(s)	589
MspA1I	CMGCKG	3 cut(s)	111, 226, 464
MspR9I	CCNGG	3 cut(s)	306, 316, 394
MvnI	CGCG	4 cut(s)	99, 111, 235, 464
NaeI	GCCGGC	1 cut(s)	591
NarI	GGCGCC	1 cut(s)	257
NciI	CCSGG	3 cut(s)	306, 316, 394
NdeII	GATC	2 cut(s)	538, 574
NgoMIV	GCCGGC	1 cut(s)	589
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	5 cut(s)	258, 270, 281, 352, 398
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	382
NotI	GCGGCCGC	1 cut(s)	459
NspI	RCATGY	1 cut(s)	139
NspV	TTCGAA	2 cut(s)	614, 629
PciI	ACATGT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	245, 626
PdiI	GCCGGC	1 cut(s)	591
PinAI	ACCGGT	1 cut(s)	582
PleI	GAGTC	2 cut(s)	369, 606
PluTI	GGCGCC	1 cut(s)	260
PpsI	GAGTC	2 cut(s)	369, 606
PscI	ACATGT	1 cut(s)	135
PspN4I	GGNNCC	5 cut(s)	258, 270, 281, 352, 398
PspOMI	GGGCCC	2 cut(s)	268, 279
PspPI	GGNCC	7 cut(s)	268, 269, 279, 280, 313, 318, 558
PstNI	CAGNNNCTG	1 cut(s)	476
RsaI	GTAC	2 cut(s)	134, 310
RsaNI	GTAC	2 cut(s)	133, 309
SacII	CCGCGG	2 cut(s)	112, 465
SalI	GTCGAC	1 cut(s)	514
Sau3AI	GATC	2 cut(s)	538, 574
Sau96I	GGNCC	7 cut(s)	268, 269, 279, 280, 313, 318, 558
SchI	GAGTC	2 cut(s)	369, 607
ScrFI	CCNGG	3 cut(s)	306, 316, 394
SduI	GDGCHC	3 cut(s)	272, 283, 333
SetI	ASST	5 cut(s)	123, 179, 389, 515, 546
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	2 cut(s)	183, 658
SfiI	GGCCNNNNNGGCC	1 cut(s)	287
SfoI	GGCGCC	1 cut(s)	258
Sfr303I	CCGCGG	2 cut(s)	112, 465
SfuI	TTCGAA	2 cut(s)	614, 629
SgrAI	CRCCGGYG	2 cut(s)	520, 582
SgrBI	CCGCGG	2 cut(s)	112, 465
SinI	GGWCC	1 cut(s)	318
Sse9I	AATT	5 cut(s)	262, 550, 610, 616, 637
SspDI	GGCGCC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	555
StyD4I	CCNGG	3 cut(s)	304, 314, 392
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	187, 659
TaqI	TCGA	6 cut(s)	167, 206, 239, 515, 614, 629
TasI	AATT	5 cut(s)	262, 550, 610, 616, 637
TatI	WGTACW	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	4 cut(s)	8, 226, 433, 476
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	5 cut(s)	262, 550, 610, 616, 637
XceI	RCATGY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.