Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005693

Physical Location & Seq

Genomic Coordinates Forward (+)

20353704 .. 20357129

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1097800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGGAATGCATGGGTAACAACTTCAGAGCTCCGACATTCTGTCACACTCAAAAAGATCAAGTTACTCTTGTTGAGGCAAAAATTGAAGTTAACTTCTATCCTCAGAGGACAAATTAGTTGTTTGGAAGAATGGGGTCTTCTGGAAAAAGATCACTCTAGTTCTTTGCTAGGAGCAACTGAAGCTTTGCAGGCCAGTACTCTCCGTCTTCCAGTTGTGGGAAAAGCAATAGTTGACTTTCAAAATCTGAAAGAAGCTGTGGGTTCAGCAGCTGATGTGATGCAGACAATGGTATCCTCGATATGCTATCTTTCGTCAAAGGTGGAGGAAATGAATTCCTTGTTGTGTGAACTTATGAAGGTTACTGCAACAGAACGGGTTGTGCTTGAACAATGCAAAGATTTTTTGTCCACATTATCCGCCATGCAGGTCAAGGATTGTAGCTTGAGAACACATATAATACAATTGCAACGTGTACCAACTATCCGAAGCCTGACAACACGCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

170

Amino Acids

18.92

Weight (kDa)

9.06

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QWRF	PF04484	1 - 130	6.1e-56	QWRF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49890 AT3G19570 AT3G19570 AT3G19570 AT3G19570 AT5G43160 AT5G43160
fragaria_vesca	FvH4_2g04080
malus_domestica	MD05G1097600.v1.1 MD05G1097800.v1.1 MD10G1103300.v1.1 MD11G1142200.v1.1
prunus_persica	Prupe.8G142000_v2.0.a1
pyrus_communis	pycom05g09590 pycom10g08900
rosa_chinensis	RchiOBHm_Chr6g0253431
rosa_laevigata	RLG00000015019
rosa_multiflora	Rmu_co7961360.1_g000001 Rmu_sc0001257.1_g000035 Rmu_sc0005426.1_g000013 Rmu_sc0025911.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211890
rosa_rugosa	Rorug05G0544200
rosa_samantha	Rh6AG059200 Rh6BG052700 Rh6CG050400 Rh6DG047100
rosa_wichuraiana	Rw0G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
AccII	CGCG	1 cut(s)	504
AciI	CCGC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	9, 201
AfaI	GTAC	2 cut(s)	199, 477
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflIII	ACRYGT	2 cut(s)	472, 502
AgsI	TTSAA	3 cut(s)	88, 242, 389
AhdI	GACNNNNNGTC	1 cut(s)	41
AluBI	AGCT	5 cut(s)	31, 185, 257, 272, 444
AluI	AGCT	5 cut(s)	31, 185, 257, 272, 444
Alw21I	GWGCWC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	334
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	131, 200
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	159, 170
BfuAI	ACCTGC	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	199
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	2 cut(s)	131, 200
BpuEI	CTTGAG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	195, 212
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	195, 212
BseXI	GCAGC	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	57, 151
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	504
BspMI	ACCTGC	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	195, 212
BssMI	GATC	2 cut(s)	57, 151
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	2 cut(s)	60, 154
BstMBI	GATC	2 cut(s)	57, 151
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	2 cut(s)	131, 200
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	194
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	198, 476
CviAII	CATG	2 cut(s)	12, 424
CviJI	RGCY	7 cut(s)	31, 185, 194, 257, 272, 444, 492
CviKI_1	RGCY	7 cut(s)	31, 185, 194, 257, 272, 444, 492
CviQI	GTAC	2 cut(s)	198, 476
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	59, 153
DpnII	GATC	2 cut(s)	57, 151
DriI	GACNNNNNGTC	1 cut(s)	41
Eam1105I	GACNNNNNGTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	409
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	9, 201
EcoICRI	GAGCTC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	2 cut(s)	15, 427
FaiI	YATR	6 cut(s)	13, 304, 356, 425, 456, 458
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	2 cut(s)	11, 423
Fnu4HI	GCNGC	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	159, 170
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	15, 427
HincII	GTYRAC	2 cut(s)	93, 235
HindII	GTYRAC	2 cut(s)	93, 235
HindIII	AAGCTT	1 cut(s)	183
HpaI	GTTAAC	1 cut(s)	93
Hpy166II	GTNNAC	5 cut(s)	93, 235, 350, 411, 476
Hpy188I	TCNGA	5 cut(s)	28, 35, 107, 249, 488
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	5 cut(s)	93, 235, 350, 411, 476
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	7 cut(s)	11, 190, 283, 368, 396, 427, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	2 cut(s)	15, 427
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	57, 151
LmnI	GCTCC	2 cut(s)	36, 173
LpnPI	CCDG	6 cut(s)	128, 176, 208, 225, 413, 506
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	159, 170
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	4 cut(s)	16, 43, 63, 361
MalI	GATC	2 cut(s)	59, 153
MboI	GATC	2 cut(s)	57, 151
MboII	GAAGA	3 cut(s)	131, 140, 200
MfeI	CAATTG	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	4 cut(s)	83, 114, 334, 464
MluI	ACGCGT	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	5 cut(s)	69, 101, 113, 307, 319
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	13
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NdeII	GATC	2 cut(s)	57, 151
NlaIII	CATG	2 cut(s)	15, 427
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	13
PctI	GAATGC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	199, 477
RsaNI	GTAC	2 cut(s)	198, 476
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	57, 151
ScaI	AGTACT	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	9 cut(s)	33, 187, 259, 274, 324, 363, 432, 446, 475
SfaNI	GCATC	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	4 cut(s)	83, 114, 334, 464
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	2 cut(s)	159, 170
SstI	GAGCTC	1 cut(s)	33
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	299
TasI	AATT	4 cut(s)	83, 114, 334, 464
TatI	WGTACW	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	347, 371
TspGWI	ACGGA	1 cut(s)	194
XapI	RAATTY	1 cut(s)	334
XspI	CTAG	2 cut(s)	159, 170
ZrmI	AGTACT	1 cut(s)	199
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.