Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001257.1

Orthogroup ID

OG0005693

Physical Location & Seq

Genomic Coordinates Forward (+)

116478 .. 118971

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001257.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggactgtagtagtgtggagaagaagagtgtgaatgtgaatggggtcggatctggtgtggtagctagggcgttgcagcagtctatgattgaggagagtagaggatcgaggtcaagatcgtcttttgatggtaggttgagcttggatttggggcattttgggggcaatgctgaggttttgaggggtgctcagcacaacccagatgccaataatgagtcttctgtgccgtctgatctcactgcttccgatacagacagtgtttcttcggggagcacttcgggtgttcaggactccaacaatgtggcttctgccaaggccgcacgagtggccgcccctcgcggcattgctgtgtctgcaaggttctggcaggagacgaatagcaggttgcggaggttgcaggatcccggttcacctttggcgactagtcctgtgtcgagagcaggggcagcggggaagtatatgcaggcgaaaaagttgaatggggagaatcctgtgtcgtctccgaggacattggcttctcccattagaggagctactaggccggcttccccggggaagctgtggacgtcttcgtctttgtcaccttcgagggggaatgctagtccttcaagggtgaggaatagttttagtggtccattgagtagtggttatgctgctagtacgccttcgtttcttagtttctctattgatacccggagagggaagaagggggaagaccgcattgttgatgcacacatgctcaggcttctgtataaccgttatctgcagtggcggtttgtaaatgcaagagcagatgctacatacatggtgcagagagtgaatgcagaggaaaatctttggaatgcatgggtaactatctcagagctacgacataatgtcacccttaaaaggatcaagttacttttgttgaggcataagttgaagctaacttctatcctcaaaggacaagtaagattcatggctttaccctattcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

325

Amino Acids

35.14

Weight (kDa)

10.79

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49890 AT3G19570 AT3G19570 AT3G19570 AT3G19570 AT5G43160 AT5G43160
fragaria_vesca	FvH4_2g04080
malus_domestica	MD05G1097600.v1.1 MD05G1097800.v1.1 MD10G1103300.v1.1 MD11G1142200.v1.1
prunus_persica	Prupe.8G142000_v2.0.a1
pyrus_communis	pycom05g09590 pycom10g08900
rosa_chinensis	RchiOBHm_Chr6g0253431
rosa_laevigata	RLG00000015019
rosa_multiflora	Rmu_co7961360.1_g000001 Rmu_sc0001257.1_g000035 Rmu_sc0005426.1_g000013 Rmu_sc0025911.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211890
rosa_rugosa	Rorug05G0544200
rosa_samantha	Rh6AG059200 Rh6BG052700 Rh6CG050400 Rh6DG047100
rosa_wichuraiana	Rw0G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	571
AatII	GACGTC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	372
AccII	CGCG	1 cut(s)	339
AciI	CCGC	7 cut(s)	318, 330, 339, 388, 449, 718, 772
AclWI	GGATC	5 cut(s)	58, 112, 395, 408, 899
AcoI	YGGCCR	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	4 cut(s)	527, 590, 699, 888
AgsI	TTSAA	3 cut(s)	478, 609, 922
AhdI	GACNNNNNGTC	1 cut(s)	875
AhlI	ACTAGT	1 cut(s)	422
AluBI	AGCT	6 cut(s)	65, 141, 533, 559, 865, 925
AluI	AGCT	6 cut(s)	65, 141, 533, 559, 865, 925
Alw21I	GWGCWC	2 cut(s)	190, 275
Alw26I	GTCTC	2 cut(s)	365, 504
AlwI	GGATC	5 cut(s)	58, 112, 395, 408, 899
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	3 cut(s)	315, 327, 539
ApeKI	GCWGC	3 cut(s)	76, 446, 653
AspS9I	GGNCC	1 cut(s)	632
AsuC2I	CCSGG	4 cut(s)	405, 551, 552, 694
AsuHPI	GGTGA	4 cut(s)	402, 573, 625, 871
AvaI	CYCGRG	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	632
BamHI	GGATCC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	3 cut(s)	210, 561, 720
Bbv12I	GWGCWC	2 cut(s)	190, 275
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	88, 458, 640
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	211
BcnI	CCSGG	4 cut(s)	405, 551, 552, 694
BcoDI	GTCTC	2 cut(s)	365, 504
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	5 cut(s)	66, 423, 537, 600, 657
BfmI	CTRYAG	2 cut(s)	7, 764
BfuAI	ACCTGC	1 cut(s)	372
BisI	GCNGC	6 cut(s)	77, 318, 330, 340, 447, 654
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	6 cut(s)	78, 319, 331, 341, 448, 655
Bme1390I	CCNGG	4 cut(s)	405, 551, 552, 694
Bme18I	GGWCC	1 cut(s)	632
BmeRI	GACNNNNNGTC	1 cut(s)	875
BmeT110I	CYCGRG	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	4 cut(s)	405, 551, 552, 694
BmsI	GCATC	3 cut(s)	193, 718, 784
BpiI	GAAGAC	3 cut(s)	210, 561, 720
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu10I	CCTNAGC	2 cut(s)	171, 740
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuMI	CCSGG	4 cut(s)	405, 551, 552, 694
BsaHI	GRCGYC	1 cut(s)	566
BsaJI	CCNNGG	5 cut(s)	312, 503, 549, 550, 551
Bsc4I	CCNNNNNNNGG	4 cut(s)	527, 590, 699, 888
Bse118I	RCCGGY	1 cut(s)	541
Bse3DI	GCAATG	2 cut(s)	172, 342
BseDI	CCNNGG	5 cut(s)	312, 503, 549, 550, 551
BseLI	CCNNNNNNNGG	4 cut(s)	527, 590, 699, 888
BseMI	GCAATG	2 cut(s)	172, 342
BseMII	CTCAG	4 cut(s)	162, 203, 754, 873
BseRI	GAGGAG	2 cut(s)	107, 543
BseXI	GCAGC	3 cut(s)	88, 458, 640
BsgI	GTGCAG	1 cut(s)	830
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	317, 329, 541
BsiHKAI	GWGCWC	2 cut(s)	190, 275
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	4 cut(s)	405, 542, 551, 694
BslI	CCNNNNNNNGG	4 cut(s)	527, 590, 699, 888
BsmAI	GTCTC	2 cut(s)	365, 504
BsmBI	CGTCTC	2 cut(s)	365, 504
BsmI	GAATGC	3 cut(s)	601, 826, 847
BsnI	GGCC	3 cut(s)	317, 329, 541
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	2 cut(s)	190, 275
Bsp143I	GATC	6 cut(s)	50, 104, 116, 232, 400, 891
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	7 cut(s)	318, 330, 339, 388, 449, 718, 772
BspANI	GGCC	3 cut(s)	317, 329, 541
BspCNI	CTCAG	4 cut(s)	163, 202, 753, 872
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	402
BspMAI	CTGCAG	1 cut(s)	768
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	5 cut(s)	58, 112, 395, 408, 899
BsrDI	GCAATG	2 cut(s)	172, 342
BsrFI	RCCGGY	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	5 cut(s)	312, 503, 549, 550, 551
BssMI	GATC	6 cut(s)	50, 104, 116, 232, 400, 891
BssNI	GRCGYC	1 cut(s)	566
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	8, 257, 758
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	465, 543
BstDEI	CTNAG	5 cut(s)	171, 189, 674, 740, 859
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	6 cut(s)	53, 107, 119, 235, 403, 894
BstMAI	GTCTC	2 cut(s)	365, 504
BstMBI	GATC	6 cut(s)	50, 104, 116, 232, 400, 891
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 326, 353, 394, 446
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	4 cut(s)	403, 549, 550, 692
BstSFI	CTRYAG	2 cut(s)	7, 764
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	3 cut(s)	88, 458, 640
BstV2I	GAAGAC	3 cut(s)	210, 561, 720
BstX2I	RGATCY	2 cut(s)	50, 400
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	2 cut(s)	50, 400
BsuRI	GGCC	3 cut(s)	317, 329, 541
BtsI	GCAGTG	2 cut(s)	237, 773
BtsIMutI	CAGTG	3 cut(s)	237, 262, 773
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	465, 543
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	632
Cfr9I	CCCGGG	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	660
CviAII	CATG	4 cut(s)	736, 805, 846, 958
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	5 cut(s)	171, 189, 674, 740, 859
DpnI	GATC	6 cut(s)	52, 106, 118, 234, 402, 893
DpnII	GATC	6 cut(s)	50, 104, 116, 232, 400, 891
DrdI	GACNNNNNNGTC	1 cut(s)	571
DriI	GACNNNNNGTC	1 cut(s)	875
DseDI	GACNNNNNNGTC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	20
Eam1105I	GACNNNNNGTC	1 cut(s)	875
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	847
ErhI	CCWWGG	1 cut(s)	312
Esp3I	CGTCTC	2 cut(s)	365, 504
FaeI	CATG	4 cut(s)	739, 808, 849, 961
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	4 cut(s)	735, 804, 845, 957
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	6 cut(s)	77, 318, 330, 340, 447, 654
Fsp4HI	GCNGC	6 cut(s)	77, 318, 330, 340, 447, 654
FspBI	CTAG	5 cut(s)	66, 423, 537, 600, 657
GluI	GCNGC	6 cut(s)	77, 318, 330, 340, 447, 654
HaeIII	GGCC	3 cut(s)	317, 329, 541
HapII	CCGG	4 cut(s)	405, 542, 551, 694
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	4 cut(s)	739, 808, 849, 961
HinfI	GANTC	4 cut(s)	215, 290, 487, 954
HpaII	CCGG	4 cut(s)	405, 542, 551, 694
HphI	GGTGA	4 cut(s)	402, 573, 625, 871
Hpy166II	GTNNAC	2 cut(s)	410, 564
Hpy188I	TCNGA	5 cut(s)	50, 232, 247, 504, 862
Hpy188III	TCNNGA	3 cut(s)	114, 287, 435
Hpy8I	GTNNAC	2 cut(s)	410, 564
HpyAV	CCTTC	4 cut(s)	594, 615, 675, 700
HpyCH4III	ACNGT	3 cut(s)	8, 257, 758
HpyCH4IV	ACGT	1 cut(s)	566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 326, 353, 394, 446
HpyF3I	CTNAG	5 cut(s)	171, 189, 674, 740, 859
HpySE526I	ACGT	1 cut(s)	566
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	4 cut(s)	739, 808, 849, 961
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
Kzo9I	GATC	6 cut(s)	50, 104, 116, 232, 400, 891
LmnI	GCTCC	2 cut(s)	270, 530
Lsp1109I	GCAGC	3 cut(s)	88, 458, 640
LweI	GCATC	3 cut(s)	193, 718, 784
MaeI	CTAG	5 cut(s)	66, 423, 537, 600, 657
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	4 cut(s)	579, 850, 877, 897
MalI	GATC	6 cut(s)	52, 106, 118, 234, 402, 893
MboI	GATC	6 cut(s)	50, 104, 116, 232, 400, 891
MboII	GAAGA	7 cut(s)	34, 37, 210, 255, 561, 715, 725
MflI	RGATCY	2 cut(s)	50, 400
MhlI	GDGCHC	2 cut(s)	190, 275
MlyI	GAGTC	2 cut(s)	224, 284
MmeI	TCCRAC	2 cut(s)	28, 318
Mph1103I	ATGCAT	1 cut(s)	847
MroNI	GCCGGC	1 cut(s)	541
MseI	TTAA	1 cut(s)	885
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	4 cut(s)	405, 542, 551, 694
MspR9I	CCNGG	4 cut(s)	405, 551, 552, 694
Mva1269I	GAATGC	3 cut(s)	601, 826, 847
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	317, 326, 353, 394, 446
NaeI	GCCGGC	1 cut(s)	543
NciI	CCSGG	4 cut(s)	405, 551, 552, 694
NdeII	GATC	6 cut(s)	50, 104, 116, 232, 400, 891
NgoMIV	GCCGGC	1 cut(s)	541
NlaIII	CATG	4 cut(s)	739, 808, 849, 961
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	579, 877
NsiI	ATGCAT	1 cut(s)	847
NspI	RCATGY	1 cut(s)	739
PctI	GAATGC	3 cut(s)	601, 826, 847
PdiI	GCCGGC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	487, 954
PkrI	GCNGC	6 cut(s)	78, 319, 331, 341, 448, 655
PleI	GAGTC	2 cut(s)	223, 284
PpsI	GAGTC	2 cut(s)	223, 284
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	632
PstI	CTGCAG	1 cut(s)	768
PsuI	RGATCY	2 cut(s)	50, 400
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	885
SatI	GCNGC	6 cut(s)	77, 318, 330, 340, 447, 654
Sau3AI	GATC	6 cut(s)	50, 104, 116, 232, 400, 891
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	2 cut(s)	224, 284
ScrFI	CCNGG	4 cut(s)	405, 551, 552, 694
SduI	GDGCHC	2 cut(s)	190, 275
SfaNI	GCATC	3 cut(s)	193, 718, 784
SfcI	CTRYAG	2 cut(s)	7, 764
SinI	GGWCC	1 cut(s)	632
SmaI	CCCGGG	1 cut(s)	552
SmiMI	CAYNNNNRTG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	422
SsiI	CCGC	7 cut(s)	318, 330, 339, 388, 449, 718, 772
SspMI	CTAG	5 cut(s)	66, 423, 537, 600, 657
StyD4I	CCNGG	4 cut(s)	403, 549, 550, 692
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	8, 257, 758
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	3 cut(s)	107, 434, 587
TauI	GCSGC	3 cut(s)	320, 332, 342
TfiI	GAWTC	2 cut(s)	487, 954
Tru1I	TTAA	1 cut(s)	885
Tru9I	TTAA	1 cut(s)	885
TscAI	CASTG	3 cut(s)	244, 262, 773
TseFI	GTSAC	2 cut(s)	579, 877
TseI	GCWGC	3 cut(s)	76, 446, 653
Tsp45I	GTSAC	2 cut(s)	579, 877
TspDTI	ATGAA	2 cut(s)	946, 963
TspMI	CCCGGG	1 cut(s)	550
TspRI	CASTG	3 cut(s)	244, 262, 773
VpaK11BI	GGWCC	1 cut(s)	632
XceI	RCATGY	1 cut(s)	739
XmaI	CCCGGG	1 cut(s)	550
XspI	CTAG	5 cut(s)	66, 423, 537, 600, 657
ZraI	GACGTC	1 cut(s)	567
Zsp2I	ATGCAT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.