Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005693

Physical Location & Seq

Genomic Coordinates Reverse (-)

13273520 .. 13273771

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1142200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATTGATGAGAGCAGAATAGCTTCTTTTGATGGTAGATTGAGCTTGGATTTGGGGAATGCTGAGTTTTTGAAGGATGCTAGGCAAAACCCAGATGCTAATTCGGCCCATGAATCTTCTGTGCCATCTGATCTCACTGATTCTGATACAGACAGTGTTTCTTTTGGTAGCACCTCAGGTGTGCAGGATGCTGGTGGTGCCAAAAAGGGTCGAACCTTACCTCGTGGCATTGCTGTGTCAGCGAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

84

Amino Acids

8.67

Weight (kDa)

4.69

Isoelectric Point (pI)

27.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49890 AT3G19570 AT3G19570 AT3G19570 AT3G19570 AT5G43160 AT5G43160
fragaria_vesca	FvH4_2g04080
malus_domestica	MD05G1097600.v1.1 MD05G1097800.v1.1 MD10G1103300.v1.1 MD11G1142200.v1.1
prunus_persica	Prupe.8G142000_v2.0.a1
pyrus_communis	pycom05g09590 pycom10g08900
rosa_chinensis	RchiOBHm_Chr6g0253431
rosa_laevigata	RLG00000015019
rosa_multiflora	Rmu_co7961360.1_g000001 Rmu_sc0001257.1_g000035 Rmu_sc0005426.1_g000013 Rmu_sc0025911.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211890
rosa_rugosa	Rorug05G0544200
rosa_samantha	Rh6AG059200 Rh6BG052700 Rh6CG050400 Rh6DG047100
rosa_wichuraiana	Rw0G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	2 cut(s)	23, 45
AluI	AGCT	2 cut(s)	23, 45
AoxI	GGCC	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	222
BccI	CCATC	2 cut(s)	26, 133
BfaI	CTAG	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	3 cut(s)	67, 85, 178
Bse21I	CCTNAGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	82, 193
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	54, 189
BsgI	GTGCAG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	55, 188
BspLI	GGNNCC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	1 cut(s)	130
BssSI	CACGAG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	63, 175
BstF5I	GGATG	2 cut(s)	82, 193
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 197, 239
Bsu36I	CCTNAGG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	82, 193
BtsIMutI	CAGTG	2 cut(s)	135, 160
Cfr13I	GGNCC	1 cut(s)	106
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	3 cut(s)	23, 45, 107
CviKI_1	RGCY	3 cut(s)	23, 45, 107
DdeI	CTNAG	2 cut(s)	63, 175
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	113
FaiI	YATR	1 cut(s)	111
FatI	CATG	1 cut(s)	109
FokI	GGATG	2 cut(s)	89, 200
FspBI	CTAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	113
HinfI	GANTC	2 cut(s)	113, 140
Hpy188I	TCNGA	2 cut(s)	130, 145
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 197, 239
HpyF3I	CTNAG	2 cut(s)	63, 175
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	4 cut(s)	105, 162, 170, 177
LweI	GCATC	3 cut(s)	67, 85, 178
MaeI	CTAG	1 cut(s)	81
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	108
MluCI	AATT	1 cut(s)	100
MnlI	CCTC	3 cut(s)	184, 231, 237
MroXI	GAANNNNTTC	1 cut(s)	22
MslI	CAYNNNNRTG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	104, 197, 239
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	113, 140
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	106
SetI	ASST	7 cut(s)	25, 47, 176, 181, 218, 223, 248
SfaNI	GCATC	3 cut(s)	67, 85, 178
SgeI	CNNG	9 cut(s)	58, 93, 104, 122, 189, 197, 204, 234, 236
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	211
TasI	AATT	1 cut(s)	100
TfiI	GAWTC	2 cut(s)	113, 140
TscAI	CASTG	2 cut(s)	142, 160
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	142, 160
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.