Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7961360.1

Orthogroup ID

OG0005693

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 446

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7961360.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

atggactgtagtagtgtggagaagaagagtgtgaatgtgaatggggtcggatctggtgtggtagctagggcgttgcagcagtctatgattgaggagagtagaggatcgaggtcaagatcgtcatttgatggtaggttgagcttggatttggggcattttgggggcaatgctgaggttttgaggggtgctcagcacaacccagatgccaataatgagtcttctgtgccgtctgatctcactgcttccgatacagacagtgtttcttcggggagcacttcgggtgttcaggactccaacaatgtggcttctgccaaggccgcacgagtggccgcccctcgcggcattgctgtgtctgcaaggttctggcaggagacgaatagcaggttgcggaggttgcaggatcccggttcacctttggcgactagtcctgtgtcgagagcagggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

148

Amino Acids

15.31

Weight (kDa)

7.98

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49890 AT3G19570 AT3G19570 AT3G19570 AT3G19570 AT5G43160 AT5G43160
fragaria_vesca	FvH4_2g04080
malus_domestica	MD05G1097600.v1.1 MD05G1097800.v1.1 MD10G1103300.v1.1 MD11G1142200.v1.1
prunus_persica	Prupe.8G142000_v2.0.a1
pyrus_communis	pycom05g09590 pycom10g08900
rosa_chinensis	RchiOBHm_Chr6g0253431
rosa_laevigata	RLG00000015019
rosa_multiflora	Rmu_co7961360.1_g000001 Rmu_sc0001257.1_g000035 Rmu_sc0005426.1_g000013 Rmu_sc0025911.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211890
rosa_rugosa	Rorug05G0544200
rosa_samantha	Rh6AG059200 Rh6BG052700 Rh6CG050400 Rh6DG047100
rosa_wichuraiana	Rw0G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AccII	CGCG	1 cut(s)	339
AciI	CCGC	4 cut(s)	318, 330, 339, 388
AclWI	GGATC	4 cut(s)	58, 112, 395, 408
AcoI	YGGCCR	1 cut(s)	327
AhlI	ACTAGT	1 cut(s)	422
AluBI	AGCT	2 cut(s)	65, 141
AluI	AGCT	2 cut(s)	65, 141
Alw21I	GWGCWC	2 cut(s)	190, 275
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	4 cut(s)	58, 112, 395, 408
AoxI	GGCC	2 cut(s)	315, 327
ApeKI	GCWGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	190, 275
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	365
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	2 cut(s)	66, 423
BfmI	CTRYAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	372
BisI	GCNGC	4 cut(s)	77, 318, 330, 340
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	4 cut(s)	78, 319, 331, 341
Bme1390I	CCNGG	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	312
Bse3DI	GCAATG	2 cut(s)	172, 342
BseDI	CCNNGG	1 cut(s)	312
BseMI	GCAATG	2 cut(s)	172, 342
BseMII	CTCAG	2 cut(s)	162, 203
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	317, 329
BsiHKAI	GWGCWC	2 cut(s)	190, 275
BsiSI	CCGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	365
BsmBI	CGTCTC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	317, 329
Bsp1286I	GDGCHC	2 cut(s)	190, 275
Bsp143I	GATC	5 cut(s)	50, 104, 116, 232, 400
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	4 cut(s)	318, 330, 339, 388
BspANI	GGCC	2 cut(s)	317, 329
BspCNI	CTCAG	2 cut(s)	163, 202
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	4 cut(s)	58, 112, 395, 408
BsrDI	GCAATG	2 cut(s)	172, 342
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	5 cut(s)	50, 104, 116, 232, 400
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	8, 257
Bst6I	CTCTTC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	171, 189
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	5 cut(s)	53, 107, 119, 235, 403
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	5 cut(s)	50, 104, 116, 232, 400
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 326, 353, 394
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	7
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	50, 400
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	2 cut(s)	50, 400
BsuRI	GGCC	2 cut(s)	317, 329
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 262
BveI	ACCTGC	1 cut(s)	372
CviJI	RGCY	5 cut(s)	65, 141, 305, 317, 329
CviKI_1	RGCY	5 cut(s)	65, 141, 305, 317, 329
DdeI	CTNAG	2 cut(s)	171, 189
DpnI	GATC	5 cut(s)	52, 106, 118, 234, 402
DpnII	GATC	5 cut(s)	50, 104, 116, 232, 400
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	365
FaiI	YATR	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	77, 318, 330, 340
Fsp4HI	GCNGC	4 cut(s)	77, 318, 330, 340
FspBI	CTAG	2 cut(s)	66, 423
GluI	GCNGC	4 cut(s)	77, 318, 330, 340
HaeIII	GGCC	2 cut(s)	317, 329
HapII	CCGG	1 cut(s)	405
HinfI	GANTC	2 cut(s)	215, 290
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	3 cut(s)	50, 232, 247
Hpy188III	TCNNGA	3 cut(s)	114, 287, 435
Hpy8I	GTNNAC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	8, 257
HpyCH4V	TGCA	3 cut(s)	76, 356, 397
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 326, 353, 394
HpyF3I	CTNAG	2 cut(s)	171, 189
Kzo9I	GATC	5 cut(s)	50, 104, 116, 232, 400
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	66, 423
MalI	GATC	5 cut(s)	52, 106, 118, 234, 402
MboI	GATC	5 cut(s)	50, 104, 116, 232, 400
MboII	GAAGA	4 cut(s)	34, 37, 210, 255
MflI	RGATCY	2 cut(s)	50, 400
MhlI	GDGCHC	2 cut(s)	190, 275
MlyI	GAGTC	2 cut(s)	224, 284
MmeI	TCCRAC	2 cut(s)	28, 318
MnlI	CCTC	7 cut(s)	85, 95, 102, 166, 174, 345, 384
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	317, 326, 353, 394
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	5 cut(s)	50, 104, 116, 232, 400
NlaIV	GGNNCC	1 cut(s)	402
PkrI	GCNGC	4 cut(s)	78, 319, 331, 341
PleI	GAGTC	2 cut(s)	223, 284
PpsI	GAGTC	2 cut(s)	223, 284
PspN4I	GGNNCC	1 cut(s)	402
PsuI	RGATCY	2 cut(s)	50, 400
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	4 cut(s)	77, 318, 330, 340
Sau3AI	GATC	5 cut(s)	50, 104, 116, 232, 400
SchI	GAGTC	2 cut(s)	224, 284
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	2 cut(s)	190, 275
SetI	ASST	9 cut(s)	67, 113, 137, 143, 177, 362, 386, 395, 415
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	422
SsiI	CCGC	4 cut(s)	318, 330, 339, 388
SspMI	CTAG	2 cut(s)	66, 423
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	8, 257
TaqI	TCGA	2 cut(s)	107, 434
TauI	GCSGC	3 cut(s)	320, 332, 342
TscAI	CASTG	2 cut(s)	244, 262
TseI	GCWGC	1 cut(s)	76
TspRI	CASTG	2 cut(s)	244, 262
XspI	CTAG	2 cut(s)	66, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.