Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005426.1

Orthogroup ID

OG0005693

Physical Location & Seq

Genomic Coordinates Reverse (-)

49728 .. 52091

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005426.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

attacttatttggaagaatgggctcttctggacagagatcactctagttctttgctaggagcgaatgaagctttgcaagccagtacccttcgtcttccagtcgttggaaaagcaatagttgactttcaaaagctgaaagattctgtgggctcagcagctgatgtgatgcaggcaatggcatcctcgatatgctcgctttcatcaaaggtggaagaaatgaattccttggtatctgaacttgtgaaggtgactacaacagaacgtcttgtgcttgaacaatgcaaagattttttgtcaacgttatcagccatgcaagtcaaggactgtagcttgagaacacatataatacaactaaaacgtctaccattacccgcagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

126

Amino Acids

13.75

Weight (kDa)

5.65

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49890 AT3G19570 AT3G19570 AT3G19570 AT3G19570 AT5G43160 AT5G43160
fragaria_vesca	FvH4_2g04080
malus_domestica	MD05G1097600.v1.1 MD05G1097800.v1.1 MD10G1103300.v1.1 MD11G1142200.v1.1
prunus_persica	Prupe.8G142000_v2.0.a1
pyrus_communis	pycom05g09590 pycom10g08900
rosa_chinensis	RchiOBHm_Chr6g0253431
rosa_laevigata	RLG00000015019
rosa_multiflora	Rmu_co7961360.1_g000001 Rmu_sc0001257.1_g000035 Rmu_sc0005426.1_g000013 Rmu_sc0025911.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211890
rosa_rugosa	Rorug05G0544200
rosa_samantha	Rh6AG059200 Rh6BG052700 Rh6CG050400 Rh6DG047100
rosa_wichuraiana	Rw0G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	361
AciI	CCGC	1 cut(s)	372
AclI	AACGTT	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	128, 275
AluBI	AGCT	4 cut(s)	71, 133, 158, 330
AluI	AGCT	4 cut(s)	71, 133, 158, 330
AlwNI	CAGNNNCTG	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	155, 374
ApoI	RAATTY	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	25, 152
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	45, 56
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	2 cut(s)	156, 375
BlpI	GCTNAGC	1 cut(s)	151
BlsI	GCNGC	2 cut(s)	157, 376
BmsI	GCATC	2 cut(s)	156, 188
BpiI	GAAGAC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	81, 98
Bse3DI	GCAATG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	81, 98
BseXI	GCAGC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	25, 152
Bsp143I	GATC	1 cut(s)	37
Bsp1720I	GCTNAGC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	81, 98
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	3 cut(s)	78, 171, 194
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstSFI	CTRYAG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	179
Cac8I	GCNNGC	3 cut(s)	78, 171, 194
CaiI	CAGNNNCTG	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	9 cut(s)	23, 71, 80, 133, 150, 158, 308, 330, 377
CviKI_1	RGCY	9 cut(s)	23, 71, 80, 133, 150, 158, 308, 330, 377
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	25, 152
EcoRI	GAATTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	25, 152
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	313
FaiI	YATR	4 cut(s)	190, 311, 342, 344
FatI	CATG	1 cut(s)	309
FauI	CCCGC	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	156, 375
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	2 cut(s)	25, 152
Fsp4HI	GCNGC	2 cut(s)	156, 375
FspBI	CTAG	2 cut(s)	45, 56
GluI	GCNGC	2 cut(s)	156, 375
Hin1II	CATG	1 cut(s)	313
HincII	GTYRAC	2 cut(s)	121, 297
HindII	GTYRAC	2 cut(s)	121, 297
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	121, 297, 362
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	121, 297, 362
HpyAV	CCTTC	2 cut(s)	98, 238
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	3 cut(s)	262, 299, 358
HpyCH4V	TGCA	4 cut(s)	76, 169, 282, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	3 cut(s)	262, 299, 358
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	4 cut(s)	14, 94, 111, 155
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	2 cut(s)	156, 188
MaeI	CTAG	2 cut(s)	45, 56
MaeII	ACGT	3 cut(s)	262, 299, 358
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	4 cut(s)	17, 26, 86, 224
MhlI	GDGCHC	2 cut(s)	25, 152
MluCI	AATT	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	157, 376
Psp1406I	AACGTT	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	156, 375
Sau3AI	GATC	1 cut(s)	37
SduI	GDGCHC	2 cut(s)	25, 152
SetI	ASST	9 cut(s)	73, 135, 160, 210, 249, 265, 302, 332, 361
SfaNI	GCATC	2 cut(s)	156, 188
SfcI	CTRYAG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	45, 56
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	3 cut(s)	265, 302, 361
TaqI	TCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	155, 374
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	81, 189, 233
Van91I	CCANNNNNTGG	1 cut(s)	104
XapI	RAATTY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	361
XspI	CTAG	2 cut(s)	45, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.