Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010907

Physical Location & Seq

Genomic Coordinates Reverse (-)

17355845 .. 17356706

Gene Structure 862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGGAAGAAGAAGGATCAATCCGACCAGAGTTTCCAATCGGAAGAGTAAAGAAGATAATGAAACTGGACAAAGACATCAACAAAATCAACTCAGAAGCTCTTCACGTCATCACTTACTCCACCGAACTCTTCCTCCACTTCCTCGCCGAGAAATCTGCTGTTGTTACGGCGGAGAAGAAGCGTAAGACTGTTAATCTCGATCATTTAAGAATCGCCGTGAAAAGACACCAACCTACTAGTGATTTCCTCTTAGACTCGCTTCCGTTGCCGGCTCAGCCTGTCAAACATACCAAATCGGTTTCCGACAAGAAGATTCCGGCGCCGCCAATTGGGACTCGTCGTATCGATGATTTCTTCAGTAAAGGGAAAGCAAAGACTGATTCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

130

Amino Acids

14.67

Weight (kDa)

9.58

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	10 - 75	2.2e-08	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	11 - 74	4.4e-21	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43250
fragaria_vesca	FvH4_4g23840 FvH4_4g23840
malus_domestica	MD13G1118300.v1.1 MD16G1118400.v1.1
prunus_persica	Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1
pyrus_communis	pycom13g10300 pycom16g10140
rosa_chinensis	RchiOBHm_Chr4g0430411
rosa_laevigata	RLG00000006979
rosa_multiflora	Rmu_co8256289.1_g000001 Rmu_sc0000131.1_g000044
rosa_roxburghii	Rroxscaffold_5G00372190
rosa_rugosa	Rorug04G0242700
rosa_samantha	Rh4BG306000 Rh4CG322000 Rh4DG303300
rosa_wichuraiana	Rw4G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AciI	CCGC	2 cut(s)	173, 326
AclWI	GGATC	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	343
AcyI	GRCGYC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	332
AhlI	ACTAGT	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AlwI	GGATC	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	322
BceAI	ACGGC	2 cut(s)	186, 203
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	1 cut(s)	326
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	108, 290
BseNI	ACTGG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	322
BshVI	ATCGAT	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	272, 320
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	17, 202
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	173, 326
BspCNI	CTCAG	2 cut(s)	107, 289
BspDI	ATCGAT	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	271
BssMI	GATC	2 cut(s)	17, 202
BssNI	GRCGYC	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	3 cut(s)	40, 108, 137
BstACI	GRCGYC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	94, 253, 276
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	20, 205
BstMBI	GATC	2 cut(s)	17, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 277
Bsu15I	ATCGAT	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	348
CviJI	RGCY	4 cut(s)	101, 275, 280, 389
CviKI_1	RGCY	4 cut(s)	101, 275, 280, 389
DdeI	CTNAG	3 cut(s)	94, 253, 276
DinI	GGCGCC	1 cut(s)	324
DpnI	GATC	2 cut(s)	19, 204
DpnII	GATC	2 cut(s)	17, 202
Eam1104I	CTCTTC	3 cut(s)	40, 108, 137
EarI	CTCTTC	3 cut(s)	40, 108, 137
EciI	GGCGGA	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	324
EheI	GGCGCC	1 cut(s)	324
FaiI	YATR	1 cut(s)	291
FaqI	GGGAC	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	326
HapII	CCGG	2 cut(s)	272, 320
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	5 cut(s)	213, 257, 316, 337, 383
HpaII	CCGG	2 cut(s)	272, 320
Hpy188I	TCNGA	4 cut(s)	26, 44, 97, 307
Hpy188III	TCNNGA	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 277
HpyF3I	CTNAG	3 cut(s)	94, 253, 276
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	323
HspAI	GCGC	1 cut(s)	323
KasI	GGCGCC	1 cut(s)	322
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	17, 202
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	42, 53, 285, 294, 333
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	19, 204
MboI	GATC	2 cut(s)	17, 202
MboII	GAAGA	9 cut(s)	20, 23, 57, 67, 95, 124, 190, 325, 349
MfeI	CAATTG	1 cut(s)	330
MluCI	AATT	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	251, 331
MmeI	TCCRAC	2 cut(s)	49, 330
MnlI	CCTC	3 cut(s)	146, 155, 260
MroNI	GCCGGC	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	2 cut(s)	195, 209
MspI	CCGG	2 cut(s)	272, 320
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	268, 277
NaeI	GCCGGC	1 cut(s)	273
NarI	GGCGCC	1 cut(s)	323
NdeII	GATC	2 cut(s)	17, 202
NgoMIV	GCCGGC	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	108
PdiI	GCCGGC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	213, 316, 383
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	2 cut(s)	251, 331
PluTI	GGCGCC	1 cut(s)	326
PpsI	GAGTC	2 cut(s)	251, 331
PspN4I	GGNNCC	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	195, 209
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	2 cut(s)	17, 202
SchI	GAGTC	2 cut(s)	251, 331
SetI	ASST	3 cut(s)	103, 111, 238
SfoI	GGCGCC	1 cut(s)	324
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	173, 326
SspDI	GGCGCC	1 cut(s)	322
SspMI	CTAG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	201, 348
TasI	AATT	1 cut(s)	330
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	213, 316, 383
Tru1I	TTAA	2 cut(s)	195, 209
Tru9I	TTAA	2 cut(s)	195, 209
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.