Histone-like transcription factor (CBF/NF-Y) and archaeal histone
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G43250 |
| fragaria_vesca | FvH4_4g23840 FvH4_4g23840 |
| malus_domestica | MD13G1118300.v1.1 MD16G1118400.v1.1 |
| prunus_persica | Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1 |
| pyrus_communis | pycom13g10300 pycom16g10140 |
| rosa_chinensis | RchiOBHm_Chr4g0430411 |
| rosa_laevigata | RLG00000006979 |
| rosa_multiflora | Rmu_co8256289.1_g000001 Rmu_sc0000131.1_g000044 |
| rosa_roxburghii | Rroxscaffold_5G00372190 |
| rosa_rugosa | Rorug04G0242700 |
| rosa_samantha | Rh4BG306000 Rh4CG322000 Rh4DG303300 |
| rosa_wichuraiana | Rw4G025980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 538 |
| AccB1I | GGYRCC | 1 cut(s) | 786 |
| AccBSI | CCGCTC | 1 cut(s) | 712 |
| AccII | CGCG | 2 cut(s) | 728, 776 |
| AclI | AACGTT | 1 cut(s) | 62 |
| AclWI | GGATC | 5 cut(s) | 358, 574, 587, 968, 1294 |
| AcsI | RAATTY | 2 cut(s) | 590, 698 |
| AfaI | GTAC | 3 cut(s) | 56, 513, 677 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1213 |
| AgsI | TTSAA | 1 cut(s) | 1251 |
| AjnI | CCWGG | 1 cut(s) | 702 |
| AluBI | AGCT | 7 cut(s) | 625, 688, 757, 820, 902, 982, 1247 |
| AluI | AGCT | 7 cut(s) | 625, 688, 757, 820, 902, 982, 1247 |
| Alw21I | GWGCWC | 1 cut(s) | 765 |
| Alw26I | GTCTC | 3 cut(s) | 676, 903, 1271 |
| AlwI | GGATC | 5 cut(s) | 358, 574, 587, 968, 1294 |
| ApeKI | GCWGC | 3 cut(s) | 230, 413, 926 |
| ApoI | RAATTY | 2 cut(s) | 590, 698 |
| AspLEI | GCGC | 3 cut(s) | 120, 744, 1039 |
| BaeGI | GKGCMC | 2 cut(s) | 831, 953 |
| BamHI | GGATCC | 1 cut(s) | 579 |
| BanI | GGYRCC | 1 cut(s) | 786 |
| BanII | GRGCYC | 1 cut(s) | 1291 |
| BauI | CACGAG | 2 cut(s) | 234, 1304 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 1 cut(s) | 765 |
| BbvI | GCAGC | 3 cut(s) | 242, 425, 913 |
| BccI | CCATC | 2 cut(s) | 87, 959 |
| BceAI | ACGGC | 2 cut(s) | 131, 823 |
| BciT130I | CCWGG | 1 cut(s) | 704 |
| BcoDI | GTCTC | 3 cut(s) | 676, 903, 1271 |
| BfaI | CTAG | 3 cut(s) | 431, 758, 933 |
| BfoI | RGCGCY | 1 cut(s) | 1040 |
| BfuAI | ACCTGC | 1 cut(s) | 538 |
| BisI | GCNGC | 8 cut(s) | 203, 231, 414, 531, 919, 927, 930, 1227 |
| BlsI | GCNGC | 8 cut(s) | 204, 232, 415, 532, 920, 928, 931, 1228 |
| Bme1390I | CCNGG | 1 cut(s) | 704 |
| BmiI | GGNNCC | 5 cut(s) | 407, 581, 788, 917, 1288 |
| BmrFI | CCNGG | 1 cut(s) | 704 |
| BmrI | ACTGGG | 1 cut(s) | 503 |
| BmsI | GCATC | 5 cut(s) | 1045, 1087, 1108, 1171, 1213 |
| BmuI | ACTGGG | 1 cut(s) | 503 |
| BoxI | GACNNNNGTC | 1 cut(s) | 864 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| Bsa29I | ATCGAT | 3 cut(s) | 82, 813, 963 |
| BsaI | GGTCTC | 2 cut(s) | 903, 1271 |
| BsaJI | CCNNGG | 1 cut(s) | 1282 |
| BsaWI | WCCGGW | 2 cut(s) | 861, 912 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 856, 886 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1213 |
| Bse1I | ACTGG | 3 cut(s) | 113, 509, 885 |
| BseBI | CCWGG | 1 cut(s) | 704 |
| BseCI | ATCGAT | 3 cut(s) | 82, 813, 963 |
| BseDI | CCNNGG | 1 cut(s) | 1282 |
| BseGI | GGATG | 1 cut(s) | 847 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1213 |
| BseMII | CTCAG | 1 cut(s) | 848 |
| BseNI | ACTGG | 3 cut(s) | 113, 509, 885 |
| BseRI | GAGGAG | 1 cut(s) | 656 |
| BseSI | GKGCMC | 2 cut(s) | 831, 953 |
| BseXI | GCAGC | 3 cut(s) | 242, 425, 913 |
| Bsh1236I | CGCG | 2 cut(s) | 728, 776 |
| Bsh1285I | CGRYCG | 2 cut(s) | 604, 862 |
| BshNI | GGYRCC | 1 cut(s) | 786 |
| BshVI | ATCGAT | 3 cut(s) | 82, 813, 963 |
| BsiEI | CGRYCG | 2 cut(s) | 604, 862 |
| BsiHKAI | GWGCWC | 1 cut(s) | 765 |
| BsiSI | CCGG | 3 cut(s) | 851, 862, 913 |
| BslFI | GGGAC | 2 cut(s) | 647, 1190 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1213 |
| BsmAI | GTCTC | 3 cut(s) | 676, 903, 1271 |
| BsmBI | CGTCTC | 1 cut(s) | 676 |
| BsmFI | GGGAC | 2 cut(s) | 647, 1190 |
| Bso31I | GGTCTC | 2 cut(s) | 903, 1271 |
| Bsp1286I | GDGCHC | 4 cut(s) | 765, 831, 953, 1291 |
| Bsp143I | GATC | 9 cut(s) | 225, 363, 579, 645, 844, 960, 1026, 1068, 1299 |
| Bsp68I | TCGCGA | 1 cut(s) | 728 |
| BspCNI | CTCAG | 1 cut(s) | 847 |
| BspDI | ATCGAT | 3 cut(s) | 82, 813, 963 |
| BspFNI | CGCG | 2 cut(s) | 728, 776 |
| BspLI | GGNNCC | 5 cut(s) | 407, 581, 788, 917, 1288 |
| BspMI | ACCTGC | 1 cut(s) | 538 |
| BspPI | GGATC | 5 cut(s) | 358, 574, 587, 968, 1294 |
| BspT107I | GGYRCC | 1 cut(s) | 786 |
| BspTNI | GGTCTC | 2 cut(s) | 903, 1271 |
| BsrBI | CCGCTC | 1 cut(s) | 712 |
| BsrI | ACTGG | 3 cut(s) | 113, 509, 885 |
| BssECI | CCNNGG | 1 cut(s) | 1282 |
| BssMI | GATC | 9 cut(s) | 225, 363, 579, 645, 844, 960, 1026, 1068, 1299 |
| BssSI | CACGAG | 2 cut(s) | 234, 1304 |
| Bst2BI | CACGAG | 2 cut(s) | 234, 1304 |
| Bst2UI | CCWGG | 1 cut(s) | 704 |
| Bst4CI | ACNGT | 2 cut(s) | 165, 602 |
| Bst6I | CTCTTC | 9 cut(s) | 216, 258, 282, 303, 324, 354, 375, 462, 495 |
| BstC8I | GCNNGC | 1 cut(s) | 949 |
| BstDEI | CTNAG | 1 cut(s) | 834 |
| BstDSI | CCRYGG | 1 cut(s) | 1282 |
| BstF5I | GGATG | 1 cut(s) | 847 |
| BstFNI | CGCG | 2 cut(s) | 728, 776 |
| BstH2I | RGCGCY | 1 cut(s) | 1040 |
| BstHHI | GCGC | 3 cut(s) | 120, 744, 1039 |
| BstKTI | GATC | 9 cut(s) | 228, 366, 582, 648, 847, 963, 1029, 1071, 1302 |
| BstMAI | GTCTC | 3 cut(s) | 676, 903, 1271 |
| BstMBI | GATC | 9 cut(s) | 225, 363, 579, 645, 844, 960, 1026, 1068, 1299 |
| BstMCI | CGRYCG | 2 cut(s) | 604, 862 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 725, 798, 826, 835, 938 |
| BstNI | CCWGG | 1 cut(s) | 704 |
| BstNSI | RCATGY | 2 cut(s) | 769, 801 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 864 |
| BstSCI | CCNGG | 1 cut(s) | 702 |
| BstSLI | GKGCMC | 2 cut(s) | 831, 953 |
| BstUI | CGCG | 2 cut(s) | 728, 776 |
| BstV1I | GCAGC | 3 cut(s) | 242, 425, 913 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 3 cut(s) | 363, 579, 1299 |
| BstYI | RGATCY | 3 cut(s) | 363, 579, 1299 |
| Bsu15I | ATCGAT | 3 cut(s) | 82, 813, 963 |
| BsuTUI | ATCGAT | 3 cut(s) | 82, 813, 963 |
| BtgI | CCRYGG | 1 cut(s) | 1282 |
| BtsCI | GGATG | 1 cut(s) | 847 |
| BtsI | GCAGTG | 1 cut(s) | 127 |
| BtsIMutI | CAGTG | 1 cut(s) | 127 |
| BtuMI | TCGCGA | 1 cut(s) | 728 |
| BveI | ACCTGC | 1 cut(s) | 538 |
| Cac8I | GCNNGC | 1 cut(s) | 949 |
| CfoI | GCGC | 3 cut(s) | 120, 744, 1039 |
| ClaI | ATCGAT | 3 cut(s) | 82, 813, 963 |
| Csp6I | GTAC | 3 cut(s) | 55, 512, 676 |
| CviAII | CATG | 3 cut(s) | 47, 766, 798 |
| CviQI | GTAC | 3 cut(s) | 55, 512, 676 |
| DdeI | CTNAG | 1 cut(s) | 834 |
| DpnI | GATC | 9 cut(s) | 227, 365, 581, 647, 846, 962, 1028, 1070, 1301 |
| DpnII | GATC | 9 cut(s) | 225, 363, 579, 645, 844, 960, 1026, 1068, 1299 |
| Eam1104I | CTCTTC | 9 cut(s) | 216, 258, 282, 303, 324, 354, 375, 462, 495 |
| EarI | CTCTTC | 9 cut(s) | 216, 258, 282, 303, 324, 354, 375, 462, 495 |
| EciI | GGCGGA | 3 cut(s) | 45, 670, 722 |
| Eco24I | GRGCYC | 1 cut(s) | 1291 |
| Eco31I | GGTCTC | 2 cut(s) | 903, 1271 |
| EcoRI | GAATTC | 2 cut(s) | 590, 698 |
| EcoRII | CCWGG | 1 cut(s) | 702 |
| EcoT38I | GRGCYC | 1 cut(s) | 1291 |
| Esp3I | CGTCTC | 1 cut(s) | 676 |
| FaeI | CATG | 3 cut(s) | 50, 769, 801 |
| FaiI | YATR | 8 cut(s) | 48, 67, 104, 140, 177, 767, 799, 1312 |
| FaqI | GGGAC | 2 cut(s) | 647, 1190 |
| FatI | CATG | 3 cut(s) | 46, 765, 797 |
| FauI | CCCGC | 2 cut(s) | 44, 940 |
| Fnu4HI | GCNGC | 8 cut(s) | 203, 231, 414, 531, 919, 927, 930, 1227 |
| FokI | GGATG | 1 cut(s) | 834 |
| FriOI | GRGCYC | 1 cut(s) | 1291 |
| Fsp4HI | GCNGC | 8 cut(s) | 203, 231, 414, 531, 919, 927, 930, 1227 |
| FspBI | CTAG | 3 cut(s) | 431, 758, 933 |
| GlaI | GCGC | 3 cut(s) | 119, 743, 1038 |
| GluI | GCNGC | 8 cut(s) | 203, 231, 414, 531, 919, 927, 930, 1227 |
| HaeII | RGCGCY | 1 cut(s) | 1040 |
| HapII | CCGG | 3 cut(s) | 851, 862, 913 |
| HhaI | GCGC | 3 cut(s) | 120, 744, 1039 |
| Hin1II | CATG | 3 cut(s) | 50, 769, 801 |
| Hin6I | GCGC | 3 cut(s) | 118, 742, 1037 |
| HinP1I | GCGC | 3 cut(s) | 118, 742, 1037 |
| HindIII | AAGCTT | 1 cut(s) | 1245 |
| HinfI | GANTC | 7 cut(s) | 313, 385, 574, 771, 865, 1000, 1307 |
| HpaII | CCGG | 3 cut(s) | 851, 862, 913 |
| Hpy188I | TCNGA | 5 cut(s) | 579, 584, 655, 960, 1005 |
| HpyAV | CCTTC | 3 cut(s) | 395, 520, 557 |
| HpyCH4III | ACNGT | 2 cut(s) | 165, 602 |
| HpyCH4IV | ACGT | 1 cut(s) | 62 |
| HpyCH4V | TGCA | 2 cut(s) | 152, 158 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 725, 798, 826, 835, 938 |
| HpyF3I | CTNAG | 1 cut(s) | 834 |
| HpySE526I | ACGT | 1 cut(s) | 62 |
| Hsp92II | CATG | 3 cut(s) | 50, 769, 801 |
| HspAI | GCGC | 3 cut(s) | 118, 742, 1037 |
| Kzo9I | GATC | 9 cut(s) | 225, 363, 579, 645, 844, 960, 1026, 1068, 1299 |
| LmnI | GCTCC | 4 cut(s) | 554, 709, 915, 1286 |
| Lsp1109I | GCAGC | 3 cut(s) | 242, 425, 913 |
| LweI | GCATC | 5 cut(s) | 1045, 1087, 1108, 1171, 1213 |
| MaeI | CTAG | 3 cut(s) | 431, 758, 933 |
| MaeII | ACGT | 1 cut(s) | 62 |
| MaeIII | GTNAC | 3 cut(s) | 111, 872, 1238 |
| MalI | GATC | 9 cut(s) | 227, 365, 581, 647, 846, 962, 1028, 1070, 1301 |
| MbiI | CCGCTC | 1 cut(s) | 712 |
| MboI | GATC | 9 cut(s) | 225, 363, 579, 645, 844, 960, 1026, 1068, 1299 |
| MfeI | CAATTG | 6 cut(s) | 1020, 1062, 1188, 1209, 1230, 1293 |
| MflI | RGATCY | 3 cut(s) | 363, 579, 1299 |
| MhlI | GDGCHC | 4 cut(s) | 765, 831, 953, 1291 |
| MluCI | AATT | 8 cut(s) | 590, 698, 1020, 1062, 1188, 1209, 1230, 1293 |
| MlyI | GAGTC | 2 cut(s) | 780, 874 |
| MmeI | TCCRAC | 2 cut(s) | 607, 938 |
| MseI | TTAA | 2 cut(s) | 86, 171 |
| MspA1I | CMGCKG | 3 cut(s) | 719, 926, 947 |
| MspI | CCGG | 3 cut(s) | 851, 862, 913 |
| MspR9I | CCNGG | 1 cut(s) | 704 |
| MunI | CAATTG | 6 cut(s) | 1020, 1062, 1188, 1209, 1230, 1293 |
| MvaI | CCWGG | 1 cut(s) | 704 |
| MvnI | CGCG | 2 cut(s) | 728, 776 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 725, 798, 826, 835, 938 |
| NdeII | GATC | 9 cut(s) | 225, 363, 579, 645, 844, 960, 1026, 1068, 1299 |
| NlaIII | CATG | 3 cut(s) | 50, 769, 801 |
| NlaIV | GGNNCC | 5 cut(s) | 407, 581, 788, 917, 1288 |
| NmuCI | GTSAC | 3 cut(s) | 111, 872, 1238 |
| NruI | TCGCGA | 1 cut(s) | 728 |
| NspI | RCATGY | 2 cut(s) | 769, 801 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 1050, 1092, 1113, 1134, 1155, 1176 |
| PfeI | GAWTC | 4 cut(s) | 313, 385, 574, 1000 |
| PflFI | GACNNNGTC | 1 cut(s) | 1202 |
| PkrI | GCNGC | 8 cut(s) | 204, 232, 415, 532, 920, 928, 931, 1228 |
| PleI | GAGTC | 2 cut(s) | 779, 873 |
| PpsI | GAGTC | 2 cut(s) | 779, 873 |
| PshAI | GACNNNNGTC | 1 cut(s) | 864 |
| Psp1406I | AACGTT | 1 cut(s) | 62 |
| Psp6I | CCWGG | 1 cut(s) | 702 |
| PspGI | CCWGG | 1 cut(s) | 702 |
| PspN4I | GGNNCC | 5 cut(s) | 407, 581, 788, 917, 1288 |
| PsuI | RGATCY | 3 cut(s) | 363, 579, 1299 |
| PsyI | GACNNNGTC | 1 cut(s) | 1202 |
| RruI | TCGCGA | 1 cut(s) | 728 |
| RsaI | GTAC | 3 cut(s) | 56, 513, 677 |
| RsaNI | GTAC | 3 cut(s) | 55, 512, 676 |
| SaqAI | TTAA | 2 cut(s) | 86, 171 |
| SatI | GCNGC | 8 cut(s) | 203, 231, 414, 531, 919, 927, 930, 1227 |
| Sau3AI | GATC | 9 cut(s) | 225, 363, 579, 645, 844, 960, 1026, 1068, 1299 |
| SchI | GAGTC | 2 cut(s) | 780, 874 |
| ScrFI | CCNGG | 1 cut(s) | 704 |
| SduI | GDGCHC | 4 cut(s) | 765, 831, 953, 1291 |
| SfaNI | GCATC | 5 cut(s) | 1045, 1087, 1108, 1171, 1213 |
| Sse9I | AATT | 8 cut(s) | 590, 698, 1020, 1062, 1188, 1209, 1230, 1293 |
| SspMI | CTAG | 3 cut(s) | 431, 758, 933 |
| StyD4I | CCNGG | 1 cut(s) | 702 |
| TaaI | ACNGT | 2 cut(s) | 165, 602 |
| TaiI | ACGT | 1 cut(s) | 65 |
| TasI | AATT | 8 cut(s) | 590, 698, 1020, 1062, 1188, 1209, 1230, 1293 |
| TauI | GCSGC | 5 cut(s) | 205, 533, 921, 932, 1229 |
| TfiI | GAWTC | 4 cut(s) | 313, 385, 574, 1000 |
| Tru1I | TTAA | 2 cut(s) | 86, 171 |
| Tru9I | TTAA | 2 cut(s) | 86, 171 |
| TscAI | CASTG | 1 cut(s) | 127 |
| TseFI | GTSAC | 3 cut(s) | 111, 872, 1238 |
| TseI | GCWGC | 3 cut(s) | 230, 413, 926 |
| Tsp45I | GTSAC | 3 cut(s) | 111, 872, 1238 |
| TspDTI | ATGAA | 3 cut(s) | 17, 119, 635 |
| TspGWI | ACGGA | 2 cut(s) | 746, 1299 |
| TspRI | CASTG | 1 cut(s) | 127 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1202 |
| XapI | RAATTY | 2 cut(s) | 590, 698 |
| XceI | RCATGY | 2 cut(s) | 769, 801 |
| XspI | CTAG | 3 cut(s) | 431, 758, 933 |