Rh4BG306000

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0010907
Physical Location & Seq
Forward (+)
47609865 .. 47610668
804 bp
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UTR
Exon/CDS
Intron
Rh4BG306000.1

Sequence Viewer

Length: 804 bp
ATGGCAGAAGACGAGACCGCCGCAACGACACCACCACAGATGGAAGAAGAACAGGACTCAACAACCGTGCAACCACCGATGGAAGAAGAAGGAGAGGACGCATCCCCGATCCGACCCGAATCCGGAGAAGAAAACGCAGTCCGACCCGAATCGGACACAGCAACGATCCAAGCCGTATCGGGAGAAGAGAACACGCAACAACAGATCGAAGAAGAAGAGAAACCACCGGTGGTTGAAGAAGATGACGCAGCCATGACCCGACCCGAATCCGGTGAAGAGAACGCAGTCGGATCTGAATCCGAAGAAGATAACATAGCACCGATCGAAATCGCATCGGAAGAAGAGAACGCCGCAACGGTCCAACCCCTATCAGAAGGAGGGAAGGCAAAAGCGAACCGACTCGAACCGATCCGACTCGAACTTCCGACGGGTCGGGTCAAGAAGATAATGAAGCTGGACAGAGACATCAACAAAATAAACTCAGAAGCCCTACACCTGGTCTCGTGCTCCGCCCAGCTCTTCCTCCAATTCCTCGCCGAGGCCTCCGGCGAGGCGGCGATGGAGAAGAAGCGCAAGATCGTGAAGCTCGAACACATACGGACGGCGGCGAAGAGGCACCAGGCCACCAGAGATTTCCTCGTCGATGAGCTCCCCGTGCCGTCTCAGCCGTCCGATCAGAAGTCCGCTGATCGGAGCCGCTCTCGCCCTGTTGCTGACAATCCAGCTCCGGCTGGCACTCGCCGGATTGAGGACTTCTTTAGTAAGCCAGCAACTAAATCCCCTATTGAGGTTGAGGAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

267

Amino Acids

29.29

Weight (kDa)

4.49

Isoelectric Point (pI)

81.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 140 - 202 9.5e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 615
AccBSI CCGCTC 1 cut(s) 699
AccIII TCCGGA 1 cut(s) 122
AciI CCGC 8 cut(s) 18, 21, 351, 510, 554, 605, 684, 697
AclWI GGATC 4 cut(s) 103, 160, 298, 403
AfiI CCNNNNNNNGG 7 cut(s) 122, 269, 496, 538, 690, 748, 787
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 2 cut(s) 495, 618
AluBI AGCT 5 cut(s) 454, 517, 586, 649, 725
AluI AGCT 5 cut(s) 454, 517, 586, 649, 725
Alw21I GWGCWC 2 cut(s) 509, 651
Alw26I GTCTC 4 cut(s) 8, 456, 505, 666
AlwI GGATC 4 cut(s) 103, 160, 298, 403
Aor13HI TCCGGA 1 cut(s) 122
AoxI GGCC 2 cut(s) 540, 621
ApeKI GCWGC 1 cut(s) 248
AsiGI ACCGGT 1 cut(s) 226
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 615
BanII GRGCYC 1 cut(s) 651
BauI CACGAG 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 509, 651
BbvI GCAGC 1 cut(s) 260
BccI CCATC 3 cut(s) 34, 73, 553
BceAI ACGGC 4 cut(s) 158, 618, 643, 652
BciT130I CCWGG 2 cut(s) 497, 620
BcoDI GTCTC 4 cut(s) 8, 456, 505, 666
BfaI CTAG 1 cut(s) 802
BisI GCNGC 6 cut(s) 21, 249, 351, 555, 606, 697
BlsI GCNGC 6 cut(s) 22, 250, 352, 556, 607, 698
Bme1390I CCNGG 2 cut(s) 497, 620
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 617, 695
BmrFI CCNGG 2 cut(s) 497, 620
BmsI GCATC 2 cut(s) 110, 341
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 4 cut(s) 621, 653, 685, 717
BsaBI GATNNNNATC 2 cut(s) 295, 326
BsaI GGTCTC 2 cut(s) 8, 505
BsaJI CCNNGG 1 cut(s) 537
BsaWI WCCGGW 3 cut(s) 122, 226, 269
Bsc4I CCNNNNNNNGG 7 cut(s) 122, 269, 496, 538, 690, 748, 787
Bse118I RCCGGY 1 cut(s) 226
Bse8I GATNNNNATC 2 cut(s) 295, 326
BseAI TCCGGA 1 cut(s) 122
BseBI CCWGG 2 cut(s) 497, 620
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 1 cut(s) 101
BseJI GATNNNNATC 2 cut(s) 295, 326
BseLI CCNNNNNNNGG 7 cut(s) 122, 269, 496, 538, 690, 748, 787
BseMII CTCAG 2 cut(s) 495, 677
BseXI GCAGC 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 513
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 542, 623
BshNI GGYRCC 1 cut(s) 615
BshTI ACCGGT 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 509, 651
BsiSI CCGG 6 cut(s) 123, 227, 270, 546, 728, 742
BslI CCNNNNNNNGG 7 cut(s) 122, 269, 496, 538, 690, 748, 787
BsmAI GTCTC 4 cut(s) 8, 456, 505, 666
BsmBI CGTCTC 1 cut(s) 666
BsnI GGCC 2 cut(s) 542, 623
Bso31I GGTCTC 2 cut(s) 8, 505
Bsp1286I GDGCHC 2 cut(s) 509, 651
Bsp13I TCCGGA 1 cut(s) 122
Bsp143I GATC 9 cut(s) 108, 165, 204, 290, 321, 408, 576, 673, 688
BspACI CCGC 8 cut(s) 18, 21, 351, 510, 554, 605, 684, 697
BspANI GGCC 2 cut(s) 542, 623
BspCNI CTCAG 2 cut(s) 494, 676
BspEI TCCGGA 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 617, 695
BspPI GGATC 4 cut(s) 103, 160, 298, 403
BspQI GCTCTTC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 615
BspTNI GGTCTC 2 cut(s) 8, 505
BsrBI CCGCTC 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 9 cut(s) 108, 165, 204, 290, 321, 408, 576, 673, 688
BssSI CACGAG 1 cut(s) 502
Bst2BI CACGAG 1 cut(s) 502
Bst2UI CCWGG 2 cut(s) 497, 620
Bst4CI ACNGT 2 cut(s) 67, 358
Bst6I CTCTTC 6 cut(s) 180, 210, 270, 336, 524, 605
BstC8I GCNNGC 2 cut(s) 733, 768
BstDEI CTNAG 2 cut(s) 481, 663
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 9 cut(s) 111, 168, 207, 293, 324, 411, 579, 676, 691
BstMAI GTCTC 4 cut(s) 8, 456, 505, 666
BstMBI GATC 9 cut(s) 108, 165, 204, 290, 321, 408, 576, 673, 688
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 655, 664, 702
BstNI CCWGG 2 cut(s) 497, 620
BstSCI CCNGG 2 cut(s) 495, 618
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 2 cut(s) 542, 623
BtgZI GCGATG 1 cut(s) 572
BtsCI GGATG 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 733, 768
CfoI GCGC 1 cut(s) 573
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 358
CseI GACGC 2 cut(s) 107, 254
CsiI ACCWGGT 1 cut(s) 495
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 1 cut(s) 253
DdeI CTNAG 2 cut(s) 481, 663
DpnI GATC 9 cut(s) 110, 167, 206, 292, 323, 410, 578, 675, 690
DpnII GATC 9 cut(s) 108, 165, 204, 290, 321, 408, 576, 673, 688
Eam1104I CTCTTC 6 cut(s) 180, 210, 270, 336, 524, 605
EarI CTCTTC 6 cut(s) 180, 210, 270, 336, 524, 605
EciI GGCGGA 1 cut(s) 499
Ecl136II GAGCTC 1 cut(s) 649
Eco147I AGGCCT 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 651
Eco31I GGTCTC 2 cut(s) 8, 505
Eco47I GGWCC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 649
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoRII CCWGG 2 cut(s) 495, 618
EcoT38I GRGCYC 1 cut(s) 651
Esp3I CGTCTC 1 cut(s) 666
FaeI CATG 1 cut(s) 256
FaiI YATR 3 cut(s) 254, 314, 596
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 6 cut(s) 21, 249, 351, 555, 606, 697
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 6 cut(s) 21, 249, 351, 555, 606, 697
FspBI CTAG 1 cut(s) 802
GlaI GCGC 1 cut(s) 572
GluI GCNGC 6 cut(s) 21, 249, 351, 555, 606, 697
GsaI CCCAGC 1 cut(s) 517
HaeIII GGCC 2 cut(s) 542, 623
HapII CCGG 6 cut(s) 123, 227, 270, 546, 728, 742
HgaI GACGC 2 cut(s) 107, 254
HhaI GCGC 1 cut(s) 573
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HinfI GANTC 8 cut(s) 56, 119, 149, 266, 296, 399, 414, 797
HpaII CCGG 6 cut(s) 123, 227, 270, 546, 728, 742
HphI GGTGA 1 cut(s) 284
Hpy188III TCNNGA 4 cut(s) 123, 180, 439, 580
Hpy99I CGWCG 2 cut(s) 430, 644
HpyAV CCTTC 3 cut(s) 83, 368, 376
HpyCH4III ACNGT 2 cut(s) 67, 358
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 3 cut(s) 655, 664, 702
HpyF3I CTNAG 2 cut(s) 481, 663
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 571
Kpn2I TCCGGA 1 cut(s) 122
Kzo9I GATC 9 cut(s) 108, 165, 204, 290, 321, 408, 576, 673, 688
LguI GCTCTTC 1 cut(s) 524
LmnI GCTCC 4 cut(s) 512, 654, 693, 730
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 2 cut(s) 110, 341
MabI ACCWGGT 1 cut(s) 495
MaeI CTAG 1 cut(s) 802
MalI GATC 9 cut(s) 110, 167, 206, 292, 323, 410, 578, 675, 690
MbiI CCGCTC 1 cut(s) 699
MboI GATC 9 cut(s) 108, 165, 204, 290, 321, 408, 576, 673, 688
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 2 cut(s) 509, 651
MluCI AATT 1 cut(s) 527
MlyI GAGTC 3 cut(s) 50, 393, 408
MmeI TCCRAC 6 cut(s) 136, 166, 268, 385, 436, 449
MroI TCCGGA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 6 cut(s) 123, 227, 270, 546, 728, 742
MspR9I CCNGG 2 cut(s) 497, 620
MvaI CCWGG 2 cut(s) 497, 620
MwoI GCNNNNNNNGC 3 cut(s) 655, 664, 702
NdeII GATC 9 cut(s) 108, 165, 204, 290, 321, 408, 576, 673, 688
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 617, 695
NmeAIII GCCGAG 1 cut(s) 562
PceI AGGCCT 1 cut(s) 542
PciSI GCTCTTC 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PfeI GAWTC 4 cut(s) 119, 149, 266, 296
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 6 cut(s) 22, 250, 352, 556, 607, 698
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 3 cut(s) 50, 393, 408
PpsI GAGTC 3 cut(s) 50, 393, 408
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 495, 618
PspFI CCCAGC 1 cut(s) 513
PspGI CCWGG 2 cut(s) 495, 618
PspN4I GGNNCC 2 cut(s) 617, 695
PspPI GGNCC 1 cut(s) 358
PsuI RGATCY 1 cut(s) 290
PvuI CGATCG 1 cut(s) 324
SacI GAGCTC 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 524
SatI GCNGC 6 cut(s) 21, 249, 351, 555, 606, 697
Sau3AI GATC 9 cut(s) 108, 165, 204, 290, 321, 408, 576, 673, 688
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 3 cut(s) 50, 393, 408
ScrFI CCNGG 2 cut(s) 497, 620
SduI GDGCHC 2 cut(s) 509, 651
SetI ASST 7 cut(s) 456, 498, 519, 588, 651, 727, 792
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 2 cut(s) 110, 341
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 1 cut(s) 358
Sse9I AATT 1 cut(s) 527
SseBI AGGCCT 1 cut(s) 542
SsiI CCGC 8 cut(s) 18, 21, 351, 510, 554, 605, 684, 697
SspMI CTAG 1 cut(s) 802
SstI GAGCTC 1 cut(s) 651
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 2 cut(s) 495, 618
TaaI ACNGT 2 cut(s) 67, 358
TaqI TCGA 6 cut(s) 207, 324, 402, 417, 588, 642
TasI AATT 1 cut(s) 527
TauI GCSGC 5 cut(s) 23, 353, 557, 608, 699
TfiI GAWTC 4 cut(s) 119, 149, 266, 296
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 358
XagI CCTNNNNNAGG 1 cut(s) 536
XspI CTAG 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.