FvH4_4g23840

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010907
Physical Location & Seq
Forward (+)
26198867 .. 26202135
3269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23840.t1

Sequence Viewer

Length: 756 bp
ATGGCAGAAAACGACACCGCCGCGGCGACACCACCCCAGATGGCAGAAGAAGAGGAGGACCCATCCCCGATCCGACCCGAATCCGGAGAAGAAACCGCTGTCCGACCCGAACCGACAGAAGAAAACACTGCAACGATCCAACCCGTATCGGAAGAAGAGAACCCGCAACCACAGATCGCGGAAGAAGAGGAACCACCACTGGCTGAAGAAGACGACGCAGCGACGACCCGACCCGAATCCGGGGAAGAGAAAGCAGTCGGATCCGAACCGGAAGAGGAGAACACGGCACCAATCGAAATCGCATCGGAAGAAGAGAATGAAGCCGAAGGAGAGGAGGCAAATCCGGAGCAACCCGGACGGATCCGACTCGAGCTTCCAACGGGTCGGGTCAAGAAGATAATGAAGCTGGATCCAGAGATCAACAAGATAAACTCAGAAGCTCTGTACCTGGTCTCCTGCTCCGCCCAGCTCTTCCTCCAATTCCTCGCCGAGGGCTCCGCCGAGGCGGCGATGGAGAAGCAGCGCAAGATCGTGAAGCTAGAGCACATAAGGACGGCGGCGAAGAGGCACCGCGCCACCAGAGATTTCCTCGTGGATGAGCTCCCCGTGCCGGCTCAGCCCTCCGATCAGAAGTCCGCTGATCGGAGCCGCGCTCGCACGGTTGCTGACAATCCCGCTCCGGCTGGCACTCGTCGGATTGATGACTTCTTTAGTAAGTCAGCAACTAAATCCCCAGTTCAGGTTGAGGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

252

Amino Acids

27.57

Weight (kDa)

4.4

Isoelectric Point (pI)

79.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 124 - 186 1.4e-15 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 286, 567
AccBSI CCGCTC 1 cut(s) 677
AccII CGCG 4 cut(s) 23, 179, 573, 651
AccIII TCCGGA 2 cut(s) 83, 343
AclWI GGATC 8 cut(s) 64, 130, 255, 268, 355, 368, 404, 417
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 7 cut(s) 83, 239, 240, 490, 610, 642, 739
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 6 cut(s) 373, 406, 440, 469, 538, 601
AluI AGCT 6 cut(s) 373, 406, 440, 469, 538, 601
Alw21I GWGCWC 2 cut(s) 546, 603
Alw26I GTCTC 1 cut(s) 457
AlwI GGATC 8 cut(s) 64, 130, 255, 268, 355, 368, 404, 417
Ama87I CYCGRG 1 cut(s) 368
Aor13HI TCCGGA 2 cut(s) 83, 343
ApeKI GCWGC 2 cut(s) 218, 520
AspLEI GCGC 3 cut(s) 525, 575, 653
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 2 cut(s) 241, 354
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 58
BamHI GGATCC 3 cut(s) 260, 360, 409
BanI GGYRCC 2 cut(s) 286, 567
BanII GRGCYC 2 cut(s) 497, 603
BauI CACGAG 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 546, 603
BbvI GCAGC 2 cut(s) 230, 532
BccI CCATC 3 cut(s) 34, 70, 505
BceAI ACGGC 2 cut(s) 300, 570
BciT130I CCWGG 1 cut(s) 449
BcnI CCSGG 2 cut(s) 241, 354
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 1 cut(s) 539
BglI GCCNNNNNGGC 1 cut(s) 506
BisI GCNGC 7 cut(s) 21, 24, 219, 507, 521, 558, 649
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 7 cut(s) 22, 25, 220, 508, 522, 559, 650
Bme1390I CCNGG 3 cut(s) 241, 354, 449
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 9 cut(s) 60, 192, 262, 288, 362, 411, 496, 569, 647
BmrFI CCNGG 3 cut(s) 241, 354, 449
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 728
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 4 cut(s) 573, 605, 637, 669
Bpu1102I GCTNAGC 1 cut(s) 615
BpuMI CCSGG 2 cut(s) 241, 354
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 4 cut(s) 21, 240, 489, 501
BsaWI WCCGGW 3 cut(s) 83, 268, 343
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 7 cut(s) 83, 239, 240, 490, 610, 642, 739
Bse118I RCCGGY 1 cut(s) 610
Bse1I ACTGG 2 cut(s) 204, 734
BseAI TCCGGA 2 cut(s) 83, 343
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 4 cut(s) 21, 240, 489, 501
BseGI GGATG 2 cut(s) 62, 601
BseLI CCNNNNNNNGG 7 cut(s) 83, 239, 240, 490, 610, 642, 739
BseMII CTCAG 2 cut(s) 447, 629
BseNI ACTGG 2 cut(s) 204, 734
BseRI GAGGAG 3 cut(s) 68, 290, 347
BseXI GCAGC 2 cut(s) 230, 532
BseYI CCCAGC 1 cut(s) 465
Bsh1236I CGCG 4 cut(s) 23, 179, 573, 651
BshNI GGYRCC 2 cut(s) 286, 567
BsiHKAI GWGCWC 2 cut(s) 546, 603
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 7 cut(s) 84, 240, 269, 344, 354, 611, 680
BslI CCNNNNNNNGG 7 cut(s) 83, 239, 240, 490, 610, 642, 739
BsmAI GTCTC 1 cut(s) 457
Bso31I GGTCTC 1 cut(s) 457
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 3 cut(s) 497, 546, 603
Bsp13I TCCGGA 2 cut(s) 83, 343
Bsp1720I GCTNAGC 1 cut(s) 615
BspCNI CTCAG 2 cut(s) 446, 628
BspEI TCCGGA 2 cut(s) 83, 343
BspFNI CGCG 4 cut(s) 23, 179, 573, 651
BspLI GGNNCC 9 cut(s) 60, 192, 262, 288, 362, 411, 496, 569, 647
BspPI GGATC 8 cut(s) 64, 130, 255, 268, 355, 368, 404, 417
BspQI GCTCTTC 1 cut(s) 476
BspT107I GGYRCC 2 cut(s) 286, 567
BspTNI GGTCTC 1 cut(s) 457
BsrBI CCGCTC 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 610
BsrI ACTGG 2 cut(s) 204, 734
BssAI RCCGGY 1 cut(s) 610
BssECI CCNNGG 4 cut(s) 21, 240, 489, 501
BssSI CACGAG 1 cut(s) 590
Bst2BI CACGAG 1 cut(s) 590
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 8 cut(s) 45, 150, 180, 240, 267, 306, 476, 557
BstC8I GCNNGC 3 cut(s) 612, 655, 685
BstDEI CTNAG 2 cut(s) 433, 615
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 62, 601
BstFNI CGCG 4 cut(s) 23, 179, 573, 651
BstHHI GCGC 3 cut(s) 525, 575, 653
BstMAI GTCTC 1 cut(s) 457
BstMWI GCNNNNNNNGC 4 cut(s) 506, 607, 616, 654
BstNI CCWGG 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 239, 352, 447
BstUI CGCG 4 cut(s) 23, 179, 573, 651
BstV1I GCAGC 2 cut(s) 230, 532
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 3 cut(s) 260, 360, 409
BstYI RGATCY 3 cut(s) 260, 360, 409
BtgI CCRYGG 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 2 cut(s) 62, 601
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 197
Cac8I GCNNGC 3 cut(s) 612, 655, 685
CfoI GCGC 3 cut(s) 525, 575, 653
Cfr10I RCCGGY 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 58
Cfr42I CCGCGG 1 cut(s) 24
CseI GACGC 1 cut(s) 224
CsiI ACCWGGT 1 cut(s) 447
Csp6I GTAC 1 cut(s) 445
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 433, 615
Eam1104I CTCTTC 8 cut(s) 45, 150, 180, 240, 267, 306, 476, 557
EarI CTCTTC 8 cut(s) 45, 150, 180, 240, 267, 306, 476, 557
EciI GGCGGA 2 cut(s) 451, 487
Ecl136II GAGCTC 1 cut(s) 601
Eco24I GRGCYC 2 cut(s) 497, 603
Eco31I GGTCTC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 601
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 447
EcoT38I GRGCYC 2 cut(s) 497, 603
FaiI YATR 2 cut(s) 548, 754
FauI CCCGC 2 cut(s) 171, 682
Fnu4HI GCNGC 7 cut(s) 21, 24, 219, 507, 521, 558, 649
FokI GGATG 2 cut(s) 49, 608
FriOI GRGCYC 2 cut(s) 497, 603
Fsp4HI GCNGC 7 cut(s) 21, 24, 219, 507, 521, 558, 649
FspBI CTAG 1 cut(s) 539
GlaI GCGC 3 cut(s) 524, 574, 652
GluI GCNGC 7 cut(s) 21, 24, 219, 507, 521, 558, 649
GsaI CCCAGC 1 cut(s) 469
HapII CCGG 7 cut(s) 84, 240, 269, 344, 354, 611, 680
HgaI GACGC 1 cut(s) 224
HhaI GCGC 3 cut(s) 525, 575, 653
Hin6I GCGC 3 cut(s) 523, 573, 651
HinP1I GCGC 3 cut(s) 523, 573, 651
HinfI GANTC 4 cut(s) 80, 236, 366, 749
HpaII CCGG 7 cut(s) 84, 240, 269, 344, 354, 611, 680
Hpy188III TCNNGA 5 cut(s) 84, 344, 391, 413, 532
Hpy99I CGWCG 3 cut(s) 218, 226, 696
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 4 cut(s) 506, 607, 616, 654
HpyF3I CTNAG 2 cut(s) 433, 615
HspAI GCGC 3 cut(s) 523, 573, 651
Kpn2I TCCGGA 2 cut(s) 83, 343
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
KspI CCGCGG 1 cut(s) 24
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 6 cut(s) 346, 464, 500, 606, 645, 682
Lsp1109I GCAGC 2 cut(s) 230, 532
LweI GCATC 1 cut(s) 311
MabI ACCWGGT 1 cut(s) 447
MaeI CTAG 1 cut(s) 539
MbiI CCGCTC 1 cut(s) 677
MflI RGATCY 3 cut(s) 260, 360, 409
MhlI GDGCHC 3 cut(s) 497, 546, 603
MluCI AATT 1 cut(s) 479
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 7 cut(s) 97, 127, 163, 238, 388, 401, 674
MroI TCCGGA 2 cut(s) 83, 343
MroNI GCCGGC 1 cut(s) 610
MspA1I CMGCKG 3 cut(s) 23, 98, 638
MspI CCGG 7 cut(s) 84, 240, 269, 344, 354, 611, 680
MspR9I CCNGG 3 cut(s) 241, 354, 449
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 4 cut(s) 23, 179, 573, 651
MwoI GCNNNNNNNGC 4 cut(s) 506, 607, 616, 654
NaeI GCCGGC 1 cut(s) 612
NciI CCSGG 2 cut(s) 241, 354
NgoMIV GCCGGC 1 cut(s) 610
NlaIV GGNNCC 9 cut(s) 60, 192, 262, 288, 362, 411, 496, 569, 647
NmeAIII GCCGAG 2 cut(s) 514, 526
PaeR7I CTCGAG 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 476
PdiI GCCGGC 1 cut(s) 612
PfeI GAWTC 2 cut(s) 80, 236
PkrI GCNGC 7 cut(s) 22, 25, 220, 508, 522, 559, 650
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PpuMI RGGWCCY 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 447
PspFI CCCAGC 1 cut(s) 465
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 9 cut(s) 60, 192, 262, 288, 362, 411, 496, 569, 647
PspPI GGNCC 1 cut(s) 58
PspPPI RGGWCCY 1 cut(s) 58
PspXI VCTCGAGB 1 cut(s) 368
PsuI RGATCY 3 cut(s) 260, 360, 409
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SacI GAGCTC 1 cut(s) 603
SacII CCGCGG 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 476
SatI GCNGC 7 cut(s) 21, 24, 219, 507, 521, 558, 649
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 3 cut(s) 241, 354, 449
SduI GDGCHC 3 cut(s) 497, 546, 603
SetI ASST 8 cut(s) 375, 408, 442, 450, 471, 540, 603, 744
SexAI ACCWGGT 1 cut(s) 447
SfaNI GCATC 1 cut(s) 311
Sfr274I CTCGAG 1 cut(s) 368
Sfr303I CCGCGG 1 cut(s) 24
SgrBI CCGCGG 1 cut(s) 24
SinI GGWCC 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 479
SspMI CTAG 1 cut(s) 539
SstI GAGCTC 1 cut(s) 603
StyD4I CCNGG 3 cut(s) 239, 352, 447
TaaI ACNGT 1 cut(s) 661
TaqI TCGA 2 cut(s) 294, 369
TasI AATT 1 cut(s) 479
TauI GCSGC 5 cut(s) 23, 26, 509, 560, 651
TfiI GAWTC 2 cut(s) 80, 236
TscAI CASTG 2 cut(s) 133, 204
TseI GCWGC 2 cut(s) 218, 520
TspDTI ATGAA 2 cut(s) 333, 416
TspGWI ACGGA 1 cut(s) 373
TspRI CASTG 2 cut(s) 133, 204
VpaK11BI GGWCC 1 cut(s) 58
XagI CCTNNNNNAGG 1 cut(s) 488
XhoI CTCGAG 1 cut(s) 368
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.