RchiOBHm_Chr4g0430411

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010907
Physical Location & Seq
Forward (+)
54934418 .. 54935007
590 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39913

Sequence Viewer

Length: 357 bp
ATGAAGCTGGACAGAGACATTAACAAAATAAACTCAGAAGCCCTACACCTGGTCTCGTGCTCCGCCCAGCTCTTCCTCCAATTCCTAGCCGAGGCCTCCGGCGAGGCGGCGATGGAGAAGAAGCGCAAGATCGTGAAGCTCGAACACATACGGACGGCGGCAAAGAGGCACCGGGCCACCAGAGATTTCCTCCTCGATGAGCTCCCCGTGCCGTCTCAGCCGTCCGATCAGAAGTCCGCTGATAGGAGCCGCTCTCGCCCTGTTGCTGACAATCCAGCTCCGGCTGGCACTCGCCGGATTGATGACTTCTTTAGTAAGCCAGCAACTAAATCCCCTATTGAGGTTGAGGAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

118

Amino Acids

13.22

Weight (kDa)

9.2

Isoelectric Point (pI)

67.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 1 - 53 6.5e-10 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AccBSI CCGCTC 1 cut(s) 252
AciI CCGC 5 cut(s) 63, 107, 158, 237, 250
AfiI CCNNNNNNNGG 4 cut(s) 49, 91, 243, 340
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 5 cut(s) 7, 70, 139, 202, 278
AluI AGCT 5 cut(s) 7, 70, 139, 202, 278
Alw21I GWGCWC 2 cut(s) 62, 204
Alw26I GTCTC 3 cut(s) 9, 58, 219
AoxI GGCC 2 cut(s) 93, 174
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 173
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 204
BauI CACGAG 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 62, 204
BccI CCATC 1 cut(s) 106
BceAI ACGGC 3 cut(s) 171, 196, 205
BciT130I CCWGG 1 cut(s) 50
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 3 cut(s) 9, 58, 219
BfaI CTAG 2 cut(s) 86, 355
BisI GCNGC 3 cut(s) 108, 159, 250
BlsI GCNGC 3 cut(s) 109, 160, 251
Bme1390I CCNGG 2 cut(s) 50, 173
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 170, 248
BmrFI CCNGG 2 cut(s) 50, 173
BplI GAGNNNNNCTC 4 cut(s) 174, 206, 238, 270
BpuMI CCSGG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 91, 243, 340
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 4 cut(s) 49, 91, 243, 340
BseMII CTCAG 2 cut(s) 48, 230
BseRI GAGGAG 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 66
BshFI GGCC 2 cut(s) 95, 176
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 62, 204
BsiSI CCGG 4 cut(s) 99, 172, 281, 295
BslI CCNNNNNNNGG 4 cut(s) 49, 91, 243, 340
BsmAI GTCTC 3 cut(s) 9, 58, 219
BsmBI CGTCTC 1 cut(s) 219
BsnI GGCC 2 cut(s) 95, 176
Bso31I GGTCTC 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 62, 204
Bsp143I GATC 2 cut(s) 129, 226
BspACI CCGC 5 cut(s) 63, 107, 158, 237, 250
BspANI GGCC 2 cut(s) 95, 176
BspCNI CTCAG 2 cut(s) 47, 229
BspLI GGNNCC 2 cut(s) 170, 248
BspQI GCTCTTC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 129, 226
BssSI CACGAG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 286, 321
BstDEI CTNAG 2 cut(s) 34, 216
BstENI CCTNNNNNAGG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 132, 229
BstMAI GTCTC 3 cut(s) 9, 58, 219
BstMBI GATC 2 cut(s) 129, 226
BstMWI GCNNNNNNNGC 3 cut(s) 208, 217, 255
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 171
BsuRI GGCC 2 cut(s) 95, 176
BtgZI GCGATG 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 286, 321
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 48
DdeI CTNAG 2 cut(s) 34, 216
DpnI GATC 2 cut(s) 131, 228
DpnII GATC 2 cut(s) 129, 226
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 219
FaiI YATR 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 108, 159, 250
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 3 cut(s) 108, 159, 250
FspBI CTAG 2 cut(s) 86, 355
GlaI GCGC 1 cut(s) 125
GluI GCNGC 3 cut(s) 108, 159, 250
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 2 cut(s) 95, 176
HapII CCGG 4 cut(s) 99, 172, 281, 295
HhaI GCGC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 1 cut(s) 350
HpaII CCGG 4 cut(s) 99, 172, 281, 295
Hpy188I TCNGA 3 cut(s) 37, 226, 231
Hpy188III TCNNGA 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 217, 255
HpyF3I CTNAG 2 cut(s) 34, 216
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 129, 226
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 4 cut(s) 65, 207, 246, 283
MabI ACCWGGT 1 cut(s) 48
MaeI CTAG 2 cut(s) 86, 355
MalI GATC 2 cut(s) 131, 228
MbiI CCGCTC 1 cut(s) 252
MboI GATC 2 cut(s) 129, 226
MboII GAAGA 2 cut(s) 64, 130
MhlI GDGCHC 2 cut(s) 62, 204
MluCI AATT 1 cut(s) 80
MnlI CCTC 9 cut(s) 85, 86, 97, 106, 159, 200, 203, 334, 340
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 4 cut(s) 99, 172, 281, 295
MspR9I CCNGG 2 cut(s) 50, 173
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 208, 217, 255
NciI CCSGG 1 cut(s) 173
NdeII GATC 2 cut(s) 129, 226
NlaIV GGNNCC 2 cut(s) 170, 248
NmeAIII GCCGAG 1 cut(s) 115
PceI AGGCCT 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PkrI GCNGC 3 cut(s) 109, 160, 251
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 170, 248
PspPI GGNCC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 3 cut(s) 108, 159, 250
Sau3AI GATC 2 cut(s) 129, 226
Sau96I GGNCC 1 cut(s) 174
ScrFI CCNGG 2 cut(s) 50, 173
SduI GDGCHC 2 cut(s) 62, 204
SetI ASST 7 cut(s) 9, 51, 72, 141, 204, 280, 345
SexAI ACCWGGT 1 cut(s) 48
Sse9I AATT 1 cut(s) 80
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 5 cut(s) 63, 107, 158, 237, 250
SspMI CTAG 2 cut(s) 86, 355
SstI GAGCTC 1 cut(s) 204
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 48, 171
TaqI TCGA 2 cut(s) 141, 195
TasI AATT 1 cut(s) 80
TauI GCSGC 3 cut(s) 110, 161, 252
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 89
XspI CTAG 2 cut(s) 86, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.