RLG00000006979

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010907
Physical Location & Seq
Reverse (-)
12330940 .. 12331728
789 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006979

Sequence Viewer

Length: 789 bp
ATGGCAGAAGACGAGACCGCCGCAACGACACCACCACAGATGGAAGAAGAACTGGACTCAACAACCGTGCAACCACCGAGGGAAGAAGAAGTAGAGGACGCATCCCCGATCCGACCCGAATCCGGAGAAGAAAACGCAGTCCGACCCGAATCGGACACAGCAACGGTCCAAGCCGTATCGGGAGAAGAGACCACGCAACCACAGATCGAAGAAGAAGAGGAACCACCGGTGGTTGAAGAAGACGACGCAGCCGTGACCCGACCCGAATCCGGTGAAGAGAACGCAGTCGGACCTGAATCCGAAGAAGATAACATAGCACCGATCGAAATCGCATCGGAAGAAGAGAACGCCGCAATGGTCCAACCCCTATCAGAAGGAGAAAAGGCAAAAGCGAACCGACTCGAACTTCCGACGGGTCGGGTCAAGAAGATAATGAAGCTGGACAGAGACATCAACAAAATAAACTCAGAAGCCCTACACCTGGTCTCATGCTCCACCCAGCTCTTCCTCCAATTCCTCGCCGAGGCCTCCGGCGAGGCGGCAATGGAGAAGAAGCGCAAGATCGTGAAGCTCGAACACATACGGACGGCGGCGAAGAGGCACCGGGCCACCAGAGATTTCCTCGTCGATGAGCTCCCTGTGCTGTCTCAGCCGTCCGATCAGAAGTCTGCTGATCGGAGCCGCTCTCGCCCGGTTGCTGACAATCCAGCTCCGGGTGGCACTCGCCGGATTGATGACTTCTTTTGTAAGCCAACAACTAAATCCCCCGTTGAGGTTGAGGAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

263

Amino Acids

28.84

Weight (kDa)

4.47

Isoelectric Point (pI)

76.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 135 - 197 4.5e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 600
AccBSI CCGCTC 1 cut(s) 684
AccIII TCCGGA 1 cut(s) 122
AciI CCGC 6 cut(s) 18, 21, 351, 539, 590, 682
AclWI GGATC 1 cut(s) 103
AfiI CCNNNNNNNGG 6 cut(s) 122, 269, 481, 523, 713, 772
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 5 cut(s) 439, 502, 571, 634, 710
AluI AGCT 5 cut(s) 439, 502, 571, 634, 710
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 5 cut(s) 8, 182, 441, 490, 651
AlwI GGATC 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 122
AoxI GGCC 2 cut(s) 525, 606
ApeKI GCWGC 1 cut(s) 248
AsiGI ACCGGT 1 cut(s) 226
AspLEI GCGC 1 cut(s) 558
AspS9I GGNCC 4 cut(s) 166, 290, 358, 606
AsuC2I CCSGG 3 cut(s) 605, 692, 714
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 3 cut(s) 166, 290, 358
BanI GGYRCC 1 cut(s) 600
BanII GRGCYC 1 cut(s) 636
BbsI GAAGAC 2 cut(s) 15, 246
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 34
BceAI ACGGC 4 cut(s) 158, 236, 603, 637
BciT130I CCWGG 1 cut(s) 482
BcnI CCSGG 3 cut(s) 605, 692, 714
BcoDI GTCTC 5 cut(s) 8, 182, 441, 490, 651
BfaI CTAG 1 cut(s) 787
BisI GCNGC 6 cut(s) 21, 249, 351, 540, 591, 682
BlsI GCNGC 6 cut(s) 22, 250, 352, 541, 592, 683
Bme1390I CCNGG 4 cut(s) 482, 605, 692, 714
Bme18I GGWCC 3 cut(s) 166, 290, 358
BmgT120I GGNCC 4 cut(s) 166, 290, 358, 606
BmiI GGNNCC 3 cut(s) 222, 602, 680
BmrFI CCNGG 4 cut(s) 482, 605, 692, 714
BmsI GCATC 2 cut(s) 110, 341
BpiI GAAGAC 2 cut(s) 15, 246
BplI GAGNNNNNCTC 4 cut(s) 606, 638, 670, 702
BpuMI CCSGG 3 cut(s) 605, 692, 714
BsaBI GATNNNNATC 1 cut(s) 326
BsaI GGTCTC 3 cut(s) 8, 182, 490
BsaJI CCNNGG 2 cut(s) 77, 522
BsaWI WCCGGW 3 cut(s) 122, 226, 269
Bsc4I CCNNNNNNNGG 6 cut(s) 122, 269, 481, 523, 713, 772
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 2 cut(s) 360, 549
Bse8I GATNNNNATC 1 cut(s) 326
BseAI TCCGGA 1 cut(s) 122
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 77, 522
BseGI GGATG 1 cut(s) 101
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 6 cut(s) 122, 269, 481, 523, 713, 772
BseMI GCAATG 2 cut(s) 360, 549
BseMII CTCAG 2 cut(s) 480, 662
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 527, 608
BshNI GGYRCC 1 cut(s) 600
BshTI ACCGGT 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 636
BsiSI CCGG 8 cut(s) 123, 227, 270, 531, 604, 692, 713, 727
BslI CCNNNNNNNGG 6 cut(s) 122, 269, 481, 523, 713, 772
BsmAI GTCTC 5 cut(s) 8, 182, 441, 490, 651
BsnI GGCC 2 cut(s) 527, 608
Bso31I GGTCTC 3 cut(s) 8, 182, 490
Bsp1286I GDGCHC 1 cut(s) 636
Bsp13I TCCGGA 1 cut(s) 122
Bsp143I GATC 6 cut(s) 108, 204, 321, 561, 658, 673
BspACI CCGC 6 cut(s) 18, 21, 351, 539, 590, 682
BspANI GGCC 2 cut(s) 527, 608
BspCNI CTCAG 2 cut(s) 479, 661
BspEI TCCGGA 1 cut(s) 122
BspLI GGNNCC 3 cut(s) 222, 602, 680
BspPI GGATC 1 cut(s) 103
BspQI GCTCTTC 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 600
BspTNI GGTCTC 3 cut(s) 8, 182, 490
BsrBI CCGCTC 1 cut(s) 684
BsrDI GCAATG 2 cut(s) 360, 549
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 77, 522
BssMI GATC 6 cut(s) 108, 204, 321, 561, 658, 673
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 2 cut(s) 67, 166
Bst6I CTCTTC 6 cut(s) 180, 210, 270, 336, 509, 590
BstDEI CTNAG 2 cut(s) 466, 648
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 558
BstKTI GATC 6 cut(s) 111, 207, 324, 564, 661, 676
BstMAI GTCTC 5 cut(s) 8, 182, 441, 490, 651
BstMBI GATC 6 cut(s) 108, 204, 321, 561, 658, 673
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 640, 649, 687
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 4 cut(s) 480, 603, 690, 712
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 2 cut(s) 15, 246
BsuRI GGCC 2 cut(s) 527, 608
BtsCI GGATG 1 cut(s) 101
CfoI GCGC 1 cut(s) 558
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 4 cut(s) 166, 290, 358, 606
CseI GACGC 2 cut(s) 107, 254
CsiI ACCWGGT 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 1 cut(s) 489
DdeI CTNAG 2 cut(s) 466, 648
DpnI GATC 6 cut(s) 110, 206, 323, 563, 660, 675
DpnII GATC 6 cut(s) 108, 204, 321, 561, 658, 673
Eam1104I CTCTTC 6 cut(s) 180, 210, 270, 336, 509, 590
EarI CTCTTC 6 cut(s) 180, 210, 270, 336, 509, 590
Ecl136II GAGCTC 1 cut(s) 634
Eco147I AGGCCT 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 636
Eco31I GGTCTC 3 cut(s) 8, 182, 490
Eco47I GGWCC 3 cut(s) 166, 290, 358
Eco53kI GAGCTC 1 cut(s) 634
EcoICRI GAGCTC 1 cut(s) 634
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 636
FaeI CATG 1 cut(s) 492
FaiI YATR 3 cut(s) 314, 490, 581
FatI CATG 1 cut(s) 488
Fnu4HI GCNGC 6 cut(s) 21, 249, 351, 540, 591, 682
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 6 cut(s) 21, 249, 351, 540, 591, 682
FspBI CTAG 1 cut(s) 787
GlaI GCGC 1 cut(s) 557
GluI GCNGC 6 cut(s) 21, 249, 351, 540, 591, 682
GsaI CCCAGC 1 cut(s) 502
HaeIII GGCC 2 cut(s) 527, 608
HapII CCGG 8 cut(s) 123, 227, 270, 531, 604, 692, 713, 727
HgaI GACGC 2 cut(s) 107, 254
HhaI GCGC 1 cut(s) 558
Hin1II CATG 1 cut(s) 492
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HinfI GANTC 7 cut(s) 56, 119, 149, 266, 296, 399, 782
HpaII CCGG 8 cut(s) 123, 227, 270, 531, 604, 692, 713, 727
HphI GGTGA 1 cut(s) 284
Hpy188III TCNNGA 4 cut(s) 123, 180, 424, 565
Hpy99I CGWCG 3 cut(s) 248, 415, 629
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 2 cut(s) 67, 166
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 649, 687
HpyF3I CTNAG 2 cut(s) 466, 648
Hsp92II CATG 1 cut(s) 492
HspAI GCGC 1 cut(s) 556
Kpn2I TCCGGA 1 cut(s) 122
Kzo9I GATC 6 cut(s) 108, 204, 321, 561, 658, 673
LguI GCTCTTC 1 cut(s) 509
LmnI GCTCC 4 cut(s) 497, 639, 678, 715
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 2 cut(s) 110, 341
MabI ACCWGGT 1 cut(s) 480
MaeI CTAG 1 cut(s) 787
MaeIII GTNAC 1 cut(s) 253
MalI GATC 6 cut(s) 110, 206, 323, 563, 660, 675
MbiI CCGCTC 1 cut(s) 684
MboI GATC 6 cut(s) 108, 204, 321, 561, 658, 673
MhlI GDGCHC 1 cut(s) 636
MluCI AATT 1 cut(s) 512
MlyI GAGTC 2 cut(s) 50, 393
MmeI TCCRAC 5 cut(s) 136, 166, 268, 385, 434
MroI TCCGGA 1 cut(s) 122
MspI CCGG 8 cut(s) 123, 227, 270, 531, 604, 692, 713, 727
MspR9I CCNGG 4 cut(s) 482, 605, 692, 714
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 3 cut(s) 640, 649, 687
NciI CCSGG 3 cut(s) 605, 692, 714
NdeII GATC 6 cut(s) 108, 204, 321, 561, 658, 673
NlaIII CATG 1 cut(s) 492
NlaIV GGNNCC 3 cut(s) 222, 602, 680
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 253
PceI AGGCCT 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 509
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 570
PfeI GAWTC 4 cut(s) 119, 149, 266, 296
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 6 cut(s) 22, 250, 352, 541, 592, 683
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 2 cut(s) 50, 393
PpsI GAGTC 2 cut(s) 50, 393
Psp124BI GAGCTC 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 3 cut(s) 222, 602, 680
PspPI GGNCC 4 cut(s) 166, 290, 358, 606
PvuI CGATCG 1 cut(s) 324
SacI GAGCTC 1 cut(s) 636
SapI GCTCTTC 1 cut(s) 509
SatI GCNGC 6 cut(s) 21, 249, 351, 540, 591, 682
Sau3AI GATC 6 cut(s) 108, 204, 321, 561, 658, 673
Sau96I GGNCC 4 cut(s) 166, 290, 358, 606
SchI GAGTC 2 cut(s) 50, 393
ScrFI CCNGG 4 cut(s) 482, 605, 692, 714
SduI GDGCHC 1 cut(s) 636
SetI ASST 8 cut(s) 295, 441, 483, 504, 573, 636, 712, 777
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 2 cut(s) 110, 341
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 3 cut(s) 166, 290, 358
Sse9I AATT 1 cut(s) 512
SseBI AGGCCT 1 cut(s) 527
SsiI CCGC 6 cut(s) 18, 21, 351, 539, 590, 682
SspMI CTAG 1 cut(s) 787
SstI GAGCTC 1 cut(s) 636
StuI AGGCCT 1 cut(s) 527
StyD4I CCNGG 4 cut(s) 480, 603, 690, 712
TaaI ACNGT 2 cut(s) 67, 166
TaqI TCGA 5 cut(s) 207, 324, 402, 573, 627
TasI AATT 1 cut(s) 512
TauI GCSGC 5 cut(s) 23, 353, 542, 593, 684
TfiI GAWTC 4 cut(s) 119, 149, 266, 296
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 1 cut(s) 598
VpaK11BI GGWCC 3 cut(s) 166, 290, 358
XagI CCTNNNNNAGG 1 cut(s) 521
XspI CTAG 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.