Rh4CG322000

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010907
Physical Location & Seq
Forward (+)
58419007 .. 58419813
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG322000.1

Sequence Viewer

Length: 807 bp
ATGGCGGAAGACGAGACCGCCGCAACGACACCACCACAGATGGAAGAAGAACAGGATTCAACAACCGTGCAACCACCGAGGGAAGAAGAAGGAGAGGACGCATCCCCGATCCGACCCGAATCCGGGGAAGAAAACGCAGTCCCACCCGAATCGGACACAGCAATGATCCAAGCCGTATCGGGAGAAGAGAACACTCAACCACAGATCGAAGAAGAAGAAGGGGAACCACCGGTGGTTGAAGAAGACGACGCAGCCATGACCCGACCCGAATGCAGTGAAGAGAACGCAGTCGGATCTGAATCCGAAGAAGATAACATAGCACCGATCGAAATCGCATCGGAAGAAGAGAACGCCGCAACGGTCCAACCCCTATCAGAAGGAGAGAAGGCAAAAGCGAACCGACTCGAACCGATTCGACTCGAACTTCCGACGGGTCGGGTCAAGAAGATAATGAAGCTGGACAGAGACATTAACAAAATAAACTCAGAAGCCCTACACCTGGTCTCGTGCTCCGCCCAGCTCTTCCTCCAATTCCTCGCCGAGGCCTCCGGCGAGGCGGCAATGGAGAAGAAGCGCAAGATCGTGAAGCTCGAACACATACGGACGGCGGCGAAGAGGCACCGGGCCACCAGAGATTTCCTAGTCGATGAGCTCCCCGTGCAGTCTCAGCCGTCCGATCAGAAGTCCGCTGATCGGAGCCGCTCTCGCCCTGTTGCTGACAATCCAGCTCCGGCTGGCACTCGCCGGATTGATGATTTCTTCAGTAAGCCAGCAACTAAATCCCCTATTGAGGTTGAGGAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

268

Amino Acids

29.48

Weight (kDa)

4.45

Isoelectric Point (pI)

82.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 141 - 203 9.5e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 618
AccBSI CCGCTC 1 cut(s) 702
AciI CCGC 9 cut(s) 5, 18, 21, 354, 513, 557, 608, 687, 700
AclWI GGATC 3 cut(s) 103, 160, 301
AcuI CTGAAG 1 cut(s) 745
AfiI CCNNNNNNNGG 6 cut(s) 122, 123, 499, 541, 693, 790
AgeI ACCGGT 1 cut(s) 229
AgsI TTSAA 2 cut(s) 60, 239
AjnI CCWGG 1 cut(s) 498
AluBI AGCT 5 cut(s) 457, 520, 589, 652, 728
AluI AGCT 5 cut(s) 457, 520, 589, 652, 728
Alw21I GWGCWC 2 cut(s) 512, 654
Alw26I GTCTC 4 cut(s) 8, 459, 508, 669
AlwI GGATC 3 cut(s) 103, 160, 301
AoxI GGCC 2 cut(s) 543, 624
ApeKI GCWGC 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 2 cut(s) 361, 624
AsuC2I CCSGG 2 cut(s) 124, 623
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 618
BanII GRGCYC 1 cut(s) 654
BauI CACGAG 1 cut(s) 505
BbsI GAAGAC 2 cut(s) 15, 249
Bbv12I GWGCWC 2 cut(s) 512, 654
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 34
BceAI ACGGC 3 cut(s) 158, 621, 655
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BciT130I CCWGG 1 cut(s) 500
BcnI CCSGG 2 cut(s) 124, 623
BcoDI GTCTC 4 cut(s) 8, 459, 508, 669
BfaI CTAG 2 cut(s) 641, 805
BisI GCNGC 6 cut(s) 21, 252, 354, 558, 609, 700
BlsI GCNGC 6 cut(s) 22, 253, 355, 559, 610, 701
Bme1390I CCNGG 3 cut(s) 124, 500, 623
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 361, 624
BmiI GGNNCC 3 cut(s) 225, 620, 698
BmrFI CCNGG 3 cut(s) 124, 500, 623
BmsI GCATC 2 cut(s) 110, 344
BpiI GAAGAC 2 cut(s) 15, 249
BplI GAGNNNNNCTC 2 cut(s) 688, 720
BpuMI CCSGG 2 cut(s) 124, 623
BsaBI GATNNNNATC 2 cut(s) 298, 329
BsaI GGTCTC 2 cut(s) 8, 508
BsaJI CCNNGG 3 cut(s) 77, 123, 540
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 6 cut(s) 122, 123, 499, 541, 693, 790
Bse118I RCCGGY 1 cut(s) 229
Bse3DI GCAATG 2 cut(s) 168, 567
Bse8I GATNNNNATC 2 cut(s) 298, 329
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 3 cut(s) 77, 123, 540
BseGI GGATG 1 cut(s) 101
BseJI GATNNNNATC 2 cut(s) 298, 329
BseLI CCNNNNNNNGG 6 cut(s) 122, 123, 499, 541, 693, 790
BseMI GCAATG 2 cut(s) 168, 567
BseMII CTCAG 2 cut(s) 498, 680
BseXI GCAGC 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 516
BsgI GTGCAG 1 cut(s) 680
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 545, 626
BshNI GGYRCC 1 cut(s) 618
BshTI ACCGGT 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 327
BsiHKAI GWGCWC 2 cut(s) 512, 654
BsiSI CCGG 6 cut(s) 123, 230, 549, 622, 731, 745
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 6 cut(s) 122, 123, 499, 541, 693, 790
BsmAI GTCTC 4 cut(s) 8, 459, 508, 669
BsmFI GGGAC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 2 cut(s) 545, 626
Bso31I GGTCTC 2 cut(s) 8, 508
Bsp1286I GDGCHC 2 cut(s) 512, 654
Bsp143I GATC 8 cut(s) 108, 165, 204, 293, 324, 579, 676, 691
BspACI CCGC 9 cut(s) 5, 18, 21, 354, 513, 557, 608, 687, 700
BspANI GGCC 2 cut(s) 545, 626
BspCNI CTCAG 2 cut(s) 497, 679
BspLI GGNNCC 3 cut(s) 225, 620, 698
BspPI GGATC 3 cut(s) 103, 160, 301
BspQI GCTCTTC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 618
BspTNI GGTCTC 2 cut(s) 8, 508
BsrBI CCGCTC 1 cut(s) 702
BsrDI GCAATG 2 cut(s) 168, 567
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 77, 123, 540
BssMI GATC 8 cut(s) 108, 165, 204, 293, 324, 579, 676, 691
BssSI CACGAG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 2 cut(s) 67, 361
Bst6I CTCTTC 5 cut(s) 180, 273, 339, 527, 608
BstC8I GCNNGC 2 cut(s) 736, 771
BstDEI CTNAG 2 cut(s) 484, 666
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 8 cut(s) 111, 168, 207, 296, 327, 582, 679, 694
BstMAI GTCTC 4 cut(s) 8, 459, 508, 669
BstMBI GATC 8 cut(s) 108, 165, 204, 293, 324, 579, 676, 691
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 3 cut(s) 658, 667, 705
BstNI CCWGG 1 cut(s) 500
BstSCI CCNGG 3 cut(s) 122, 498, 621
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 2 cut(s) 15, 249
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 2 cut(s) 545, 626
BtsCI GGATG 1 cut(s) 101
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 736, 771
CfoI GCGC 1 cut(s) 576
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 361, 624
CseI GACGC 2 cut(s) 107, 257
CsiI ACCWGGT 1 cut(s) 498
CspAI ACCGGT 1 cut(s) 229
CviAII CATG 1 cut(s) 256
DdeI CTNAG 2 cut(s) 484, 666
DpnI GATC 8 cut(s) 110, 167, 206, 295, 326, 581, 678, 693
DpnII GATC 8 cut(s) 108, 165, 204, 293, 324, 579, 676, 691
Eam1104I CTCTTC 5 cut(s) 180, 273, 339, 527, 608
EarI CTCTTC 5 cut(s) 180, 273, 339, 527, 608
EciI GGCGGA 2 cut(s) 20, 502
Ecl136II GAGCTC 1 cut(s) 652
Eco147I AGGCCT 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 654
Eco31I GGTCTC 2 cut(s) 8, 508
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 745
EcoICRI GAGCTC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 1 cut(s) 259
FaiI YATR 3 cut(s) 257, 317, 599
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 6 cut(s) 21, 252, 354, 558, 609, 700
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 6 cut(s) 21, 252, 354, 558, 609, 700
FspBI CTAG 2 cut(s) 641, 805
GlaI GCGC 1 cut(s) 575
GluI GCNGC 6 cut(s) 21, 252, 354, 558, 609, 700
GsaI CCCAGC 1 cut(s) 520
HaeIII GGCC 2 cut(s) 545, 626
HapII CCGG 6 cut(s) 123, 230, 549, 622, 731, 745
HgaI GACGC 2 cut(s) 107, 257
HhaI GCGC 1 cut(s) 576
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HinfI GANTC 8 cut(s) 56, 119, 149, 299, 402, 412, 417, 800
HpaII CCGG 6 cut(s) 123, 230, 549, 622, 731, 745
Hpy188III TCNNGA 3 cut(s) 180, 442, 583
Hpy99I CGWCG 2 cut(s) 251, 433
HpyAV CCTTC 4 cut(s) 83, 212, 371, 379
HpyCH4III ACNGT 2 cut(s) 67, 361
HpyCH4V TGCA 3 cut(s) 70, 273, 661
HpyF10VI GCNNNNNNNGC 3 cut(s) 658, 667, 705
HpyF3I CTNAG 2 cut(s) 484, 666
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 574
Kzo9I GATC 8 cut(s) 108, 165, 204, 293, 324, 579, 676, 691
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 4 cut(s) 515, 657, 696, 733
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 2 cut(s) 110, 344
MabI ACCWGGT 1 cut(s) 498
MaeI CTAG 2 cut(s) 641, 805
MalI GATC 8 cut(s) 110, 167, 206, 295, 326, 581, 678, 693
MbiI CCGCTC 1 cut(s) 702
MboI GATC 8 cut(s) 108, 165, 204, 293, 324, 579, 676, 691
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 512, 654
MluCI AATT 1 cut(s) 530
MlyI GAGTC 2 cut(s) 396, 411
MmeI TCCRAC 4 cut(s) 136, 271, 388, 452
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 6 cut(s) 123, 230, 549, 622, 731, 745
MspR9I CCNGG 3 cut(s) 124, 500, 623
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 3 cut(s) 658, 667, 705
NciI CCSGG 2 cut(s) 124, 623
NdeII GATC 8 cut(s) 108, 165, 204, 293, 324, 579, 676, 691
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 3 cut(s) 225, 620, 698
NmeAIII GCCGAG 1 cut(s) 565
PceI AGGCCT 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PctI GAATGC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 5 cut(s) 56, 119, 149, 299, 412
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 6 cut(s) 22, 253, 355, 559, 610, 701
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 2 cut(s) 396, 411
PpsI GAGTC 2 cut(s) 396, 411
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 498
PspFI CCCAGC 1 cut(s) 516
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 3 cut(s) 225, 620, 698
PspPI GGNCC 2 cut(s) 361, 624
PsuI RGATCY 1 cut(s) 293
PvuI CGATCG 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 6 cut(s) 21, 252, 354, 558, 609, 700
Sau3AI GATC 8 cut(s) 108, 165, 204, 293, 324, 579, 676, 691
Sau96I GGNCC 2 cut(s) 361, 624
SchI GAGTC 2 cut(s) 396, 411
ScrFI CCNGG 3 cut(s) 124, 500, 623
SduI GDGCHC 2 cut(s) 512, 654
SetI ASST 7 cut(s) 459, 501, 522, 591, 654, 730, 795
SexAI ACCWGGT 1 cut(s) 498
SfaNI GCATC 2 cut(s) 110, 344
SgrAI CRCCGGYG 1 cut(s) 229
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 530
SseBI AGGCCT 1 cut(s) 545
SsiI CCGC 9 cut(s) 5, 18, 21, 354, 513, 557, 608, 687, 700
SspMI CTAG 2 cut(s) 641, 805
SstI GAGCTC 1 cut(s) 654
StuI AGGCCT 1 cut(s) 545
StyD4I CCNGG 3 cut(s) 122, 498, 621
TaaI ACNGT 2 cut(s) 67, 361
TaqI TCGA 7 cut(s) 207, 327, 405, 415, 420, 591, 645
TasI AATT 1 cut(s) 530
TauI GCSGC 5 cut(s) 23, 356, 560, 611, 702
TfiI GAWTC 5 cut(s) 56, 119, 149, 299, 412
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 467
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 361
XagI CCTNNNNNAGG 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 641, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.