Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000131.1

Orthogroup ID

OG0010907

Physical Location & Seq

Genomic Coordinates Reverse (-)

214855 .. 215661

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000131.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggcggaagacgagaccgccgcaacgacaccaccacaggtggaagaagaacaggactcaacaaccgtgcaaccaccgagggaagaagaaggagaggacgcatccccgatccgacccgaatccggggaagaaaacgcagtcccacccgaatcggacacagcaatgatccaagccgtatcgggagaagagaacacgcaaccacagatcgaagaagaagaaggggaaccaccggtggttgaagaagacgacgcagccatgacccgacccgaatccagtgaagagaacgcagtcggatctgaatccgaagaagataacatagcaccgatcgaaatcgcatcggaagaagagaacgccgcaacggtccaacccctatcagaaggagagaaggcaaaagcgaacggactcgaaccgattcgactcgaacttccgacgggtcgggtcaagaagataatgaagctggacagagacattaacaaaataaactcagaagccctacacctggtctcgtgctccgcccagctcttcctccaattcctcgccgaggcctccggcgaggcggcgatggagaagaagcgcaagatcgtgaagctcgaacacatacggacggcggcgaagaggcaccgggccaccagagatttcctagtcgatgagctccccgtgcagtctcagccgtccgatcagaagtccgctgatcggagccgctctcgccctgttgctgacaatccagctccggctggcactcgccggattgatgatttcttcagtaagccagcaactaaatcccctattgaggttgaggagtcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

268

Amino Acids

29.33

Weight (kDa)

4.42

Isoelectric Point (pI)

81.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43250
fragaria_vesca	FvH4_4g23840 FvH4_4g23840
malus_domestica	MD13G1118300.v1.1 MD16G1118400.v1.1
prunus_persica	Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1
pyrus_communis	pycom13g10300 pycom16g10140
rosa_chinensis	RchiOBHm_Chr4g0430411
rosa_laevigata	RLG00000006979
rosa_multiflora	Rmu_co8256289.1_g000001 Rmu_sc0000131.1_g000044
rosa_roxburghii	Rroxscaffold_5G00372190
rosa_rugosa	Rorug04G0242700
rosa_samantha	Rh4BG306000 Rh4CG322000 Rh4DG303300
rosa_wichuraiana	Rw4G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	618
AccBSI	CCGCTC	1 cut(s)	702
AciI	CCGC	9 cut(s)	5, 18, 21, 354, 513, 557, 608, 687, 700
AclWI	GGATC	3 cut(s)	103, 160, 301
AcuI	CTGAAG	1 cut(s)	745
AfiI	CCNNNNNNNGG	6 cut(s)	122, 123, 499, 541, 693, 790
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	5 cut(s)	457, 520, 589, 652, 728
AluI	AGCT	5 cut(s)	457, 520, 589, 652, 728
Alw21I	GWGCWC	2 cut(s)	512, 654
Alw26I	GTCTC	4 cut(s)	8, 459, 508, 669
AlwI	GGATC	3 cut(s)	103, 160, 301
AoxI	GGCC	2 cut(s)	543, 624
ApeKI	GCWGC	1 cut(s)	251
AsiGI	ACCGGT	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	361, 624
AsuC2I	CCSGG	2 cut(s)	124, 623
AvaII	GGWCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	654
BauI	CACGAG	1 cut(s)	505
BbsI	GAAGAC	2 cut(s)	15, 249
Bbv12I	GWGCWC	2 cut(s)	512, 654
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	3 cut(s)	158, 621, 655
BciT130I	CCWGG	1 cut(s)	500
BcnI	CCSGG	2 cut(s)	124, 623
BcoDI	GTCTC	4 cut(s)	8, 459, 508, 669
BfaI	CTAG	2 cut(s)	641, 805
BisI	GCNGC	6 cut(s)	21, 252, 354, 558, 609, 700
BlsI	GCNGC	6 cut(s)	22, 253, 355, 559, 610, 701
Bme1390I	CCNGG	3 cut(s)	124, 500, 623
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	361, 624
BmiI	GGNNCC	3 cut(s)	225, 620, 698
BmrFI	CCNGG	3 cut(s)	124, 500, 623
BmsI	GCATC	2 cut(s)	110, 344
BpiI	GAAGAC	2 cut(s)	15, 249
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpuMI	CCSGG	2 cut(s)	124, 623
BsaBI	GATNNNNATC	2 cut(s)	298, 329
BsaI	GGTCTC	2 cut(s)	8, 508
BsaJI	CCNNGG	3 cut(s)	77, 123, 540
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	6 cut(s)	122, 123, 499, 541, 693, 790
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	168
Bse8I	GATNNNNATC	2 cut(s)	298, 329
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	3 cut(s)	77, 123, 540
BseGI	GGATG	1 cut(s)	101
BseJI	GATNNNNATC	2 cut(s)	298, 329
BseLI	CCNNNNNNNGG	6 cut(s)	122, 123, 499, 541, 693, 790
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	498, 680
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	516
BsgI	GTGCAG	1 cut(s)	680
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	545, 626
BshNI	GGYRCC	1 cut(s)	618
BshTI	ACCGGT	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	2 cut(s)	512, 654
BsiSI	CCGG	6 cut(s)	123, 230, 549, 622, 731, 745
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	6 cut(s)	122, 123, 499, 541, 693, 790
BsmAI	GTCTC	4 cut(s)	8, 459, 508, 669
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	545, 626
Bso31I	GGTCTC	2 cut(s)	8, 508
Bsp1286I	GDGCHC	2 cut(s)	512, 654
Bsp143I	GATC	8 cut(s)	108, 165, 204, 293, 324, 579, 676, 691
BspACI	CCGC	9 cut(s)	5, 18, 21, 354, 513, 557, 608, 687, 700
BspANI	GGCC	2 cut(s)	545, 626
BspCNI	CTCAG	2 cut(s)	497, 679
BspLI	GGNNCC	3 cut(s)	225, 620, 698
BspPI	GGATC	3 cut(s)	103, 160, 301
BspQI	GCTCTTC	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	618
BspTNI	GGTCTC	2 cut(s)	8, 508
BsrBI	CCGCTC	1 cut(s)	702
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	77, 123, 540
BssMI	GATC	8 cut(s)	108, 165, 204, 293, 324, 579, 676, 691
BssSI	CACGAG	1 cut(s)	505
Bst2BI	CACGAG	1 cut(s)	505
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	67, 361
Bst6I	CTCTTC	5 cut(s)	180, 273, 339, 527, 608
BstC8I	GCNNGC	2 cut(s)	736, 771
BstDEI	CTNAG	2 cut(s)	484, 666
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	8 cut(s)	111, 168, 207, 296, 327, 582, 679, 694
BstMAI	GTCTC	4 cut(s)	8, 459, 508, 669
BstMBI	GATC	8 cut(s)	108, 165, 204, 293, 324, 579, 676, 691
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	3 cut(s)	658, 667, 705
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	3 cut(s)	122, 498, 621
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	2 cut(s)	15, 249
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	545, 626
BtgZI	GCGATG	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	736, 771
CfoI	GCGC	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	361, 624
CseI	GACGC	2 cut(s)	107, 257
CsiI	ACCWGGT	1 cut(s)	498
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	484, 666
DpnI	GATC	8 cut(s)	110, 167, 206, 295, 326, 581, 678, 693
DpnII	GATC	8 cut(s)	108, 165, 204, 293, 324, 579, 676, 691
Eam1104I	CTCTTC	5 cut(s)	180, 273, 339, 527, 608
EarI	CTCTTC	5 cut(s)	180, 273, 339, 527, 608
EciI	GGCGGA	2 cut(s)	20, 502
Ecl136II	GAGCTC	1 cut(s)	652
Eco147I	AGGCCT	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	654
Eco31I	GGTCTC	2 cut(s)	8, 508
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	652
Eco57I	CTGAAG	1 cut(s)	745
EcoICRI	GAGCTC	1 cut(s)	652
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	654
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	257, 317, 599
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	6 cut(s)	21, 252, 354, 558, 609, 700
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	6 cut(s)	21, 252, 354, 558, 609, 700
FspBI	CTAG	2 cut(s)	641, 805
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	6 cut(s)	21, 252, 354, 558, 609, 700
GsaI	CCCAGC	1 cut(s)	520
HaeIII	GGCC	2 cut(s)	545, 626
HapII	CCGG	6 cut(s)	123, 230, 549, 622, 731, 745
HgaI	GACGC	2 cut(s)	107, 257
HhaI	GCGC	1 cut(s)	576
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HinfI	GANTC	9 cut(s)	56, 119, 149, 269, 299, 402, 412, 417, 800
HpaII	CCGG	6 cut(s)	123, 230, 549, 622, 731, 745
Hpy188III	TCNNGA	3 cut(s)	180, 442, 583
Hpy99I	CGWCG	2 cut(s)	251, 433
HpyAV	CCTTC	4 cut(s)	83, 212, 371, 379
HpyCH4III	ACNGT	2 cut(s)	67, 361
HpyCH4V	TGCA	2 cut(s)	70, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	658, 667, 705
HpyF3I	CTNAG	2 cut(s)	484, 666
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	574
Kzo9I	GATC	8 cut(s)	108, 165, 204, 293, 324, 579, 676, 691
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	4 cut(s)	515, 657, 696, 733
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	2 cut(s)	110, 344
MabI	ACCWGGT	1 cut(s)	498
MaeI	CTAG	2 cut(s)	641, 805
MalI	GATC	8 cut(s)	110, 167, 206, 295, 326, 581, 678, 693
MbiI	CCGCTC	1 cut(s)	702
MboI	GATC	8 cut(s)	108, 165, 204, 293, 324, 579, 676, 691
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	2 cut(s)	512, 654
MluCI	AATT	1 cut(s)	530
MlyI	GAGTC	3 cut(s)	50, 396, 411
MmeI	TCCRAC	4 cut(s)	136, 271, 388, 452
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	6 cut(s)	123, 230, 549, 622, 731, 745
MspR9I	CCNGG	3 cut(s)	124, 500, 623
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	658, 667, 705
NciI	CCSGG	2 cut(s)	124, 623
NdeII	GATC	8 cut(s)	108, 165, 204, 293, 324, 579, 676, 691
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	3 cut(s)	225, 620, 698
NmeAIII	GCCGAG	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	5 cut(s)	119, 149, 269, 299, 412
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	6 cut(s)	22, 253, 355, 559, 610, 701
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	3 cut(s)	50, 396, 411
PpsI	GAGTC	3 cut(s)	50, 396, 411
Psp124BI	GAGCTC	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	3 cut(s)	225, 620, 698
PspPI	GGNCC	2 cut(s)	361, 624
PsuI	RGATCY	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	654
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	6 cut(s)	21, 252, 354, 558, 609, 700
Sau3AI	GATC	8 cut(s)	108, 165, 204, 293, 324, 579, 676, 691
Sau96I	GGNCC	2 cut(s)	361, 624
SchI	GAGTC	3 cut(s)	50, 396, 411
ScrFI	CCNGG	3 cut(s)	124, 500, 623
SduI	GDGCHC	2 cut(s)	512, 654
SetI	ASST	8 cut(s)	42, 459, 501, 522, 591, 654, 730, 795
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	2 cut(s)	110, 344
SgrAI	CRCCGGYG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	530
SseBI	AGGCCT	1 cut(s)	545
SsiI	CCGC	9 cut(s)	5, 18, 21, 354, 513, 557, 608, 687, 700
SspMI	CTAG	2 cut(s)	641, 805
SstI	GAGCTC	1 cut(s)	654
StuI	AGGCCT	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	122, 498, 621
TaaI	ACNGT	2 cut(s)	67, 361
TaqI	TCGA	7 cut(s)	207, 327, 405, 415, 420, 591, 645
TasI	AATT	1 cut(s)	530
TauI	GCSGC	5 cut(s)	23, 356, 560, 611, 702
TfiI	GAWTC	5 cut(s)	119, 149, 269, 299, 412
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	467
TspGWI	ACGGA	2 cut(s)	414, 616
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	361
XagI	CCTNNNNNAGG	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	641, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.