Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256289.1

Orthogroup ID

OG0010907

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 567

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256289.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgacccgacccgaatccagtgaagagaacgcagtcggatctgaatccgaagaagataacatagcaccgatcgaaatcgcatcggaagaagagaacgccgcaacggtccaacccctatcagaaggagagaaggcaaaagcgaacggactcgaaccgattcgactcgaacttccgacgggtcgggtcaagaagataatgaagctggacagagacattaacaaaataaactcagaagccctacacctggtctcgtgctccgcccagctcttcctccaattcctcgccgaggcctccggcgaggcggcgatggagaagaagcgcaagatcgtgaagctcgaacacatacggacggcggcgaagaggcaccgggccaccagagatttcctagtcgatgagctccccgtgcagtctcagccgtccgatcagaagtccgctgatcggagccgctctcgccctgttgctgacaatccagctccggctggcactcgccggattgatgatttcttcagtaagccagcaactaaatcccctattgaggttgaggagtcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

183

Amino Acids

20.21

Weight (kDa)

5.42

Isoelectric Point (pI)

72.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43250
fragaria_vesca	FvH4_4g23840 FvH4_4g23840
malus_domestica	MD13G1118300.v1.1 MD16G1118400.v1.1
prunus_persica	Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1
pyrus_communis	pycom13g10300 pycom16g10140
rosa_chinensis	RchiOBHm_Chr4g0430411
rosa_laevigata	RLG00000006979
rosa_multiflora	Rmu_co8256289.1_g000001 Rmu_sc0000131.1_g000044
rosa_roxburghii	Rroxscaffold_5G00372190
rosa_rugosa	Rorug04G0242700
rosa_samantha	Rh4BG306000 Rh4CG322000 Rh4DG303300
rosa_wichuraiana	Rw4G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	363
AccBSI	CCGCTC	1 cut(s)	447
AciI	CCGC	6 cut(s)	99, 258, 302, 353, 432, 445
AclWI	GGATC	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	490
AfiI	CCNNNNNNNGG	4 cut(s)	244, 286, 438, 535
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	5 cut(s)	202, 265, 334, 397, 473
AluI	AGCT	5 cut(s)	202, 265, 334, 397, 473
Alw21I	GWGCWC	2 cut(s)	257, 399
Alw26I	GTCTC	3 cut(s)	204, 253, 414
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	2 cut(s)	288, 369
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	106, 369
AsuC2I	CCSGG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	399
BauI	CACGAG	1 cut(s)	250
Bbv12I	GWGCWC	2 cut(s)	257, 399
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	2 cut(s)	366, 400
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	3 cut(s)	204, 253, 414
BfaI	CTAG	2 cut(s)	386, 550
BisI	GCNGC	4 cut(s)	99, 303, 354, 445
BlsI	GCNGC	4 cut(s)	100, 304, 355, 446
Bme1390I	CCNGG	2 cut(s)	245, 368
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	106, 369
BmiI	GGNNCC	2 cut(s)	365, 443
BmrFI	CCNGG	2 cut(s)	245, 368
BmsI	GCATC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpuMI	CCSGG	1 cut(s)	368
BsaBI	GATNNNNATC	2 cut(s)	43, 74
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 286, 438, 535
Bse1I	ACTGG	1 cut(s)	18
Bse8I	GATNNNNATC	2 cut(s)	43, 74
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	285
BseJI	GATNNNNATC	2 cut(s)	43, 74
BseLI	CCNNNNNNNGG	4 cut(s)	244, 286, 438, 535
BseMII	CTCAG	2 cut(s)	243, 425
BseNI	ACTGG	1 cut(s)	18
BseYI	CCCAGC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	290, 371
BshNI	GGYRCC	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	2 cut(s)	257, 399
BsiSI	CCGG	4 cut(s)	294, 367, 476, 490
BslI	CCNNNNNNNGG	4 cut(s)	244, 286, 438, 535
BsmAI	GTCTC	3 cut(s)	204, 253, 414
BsnI	GGCC	2 cut(s)	290, 371
Bso31I	GGTCTC	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	257, 399
Bsp143I	GATC	5 cut(s)	38, 69, 324, 421, 436
BspACI	CCGC	6 cut(s)	99, 258, 302, 353, 432, 445
BspANI	GGCC	2 cut(s)	290, 371
BspCNI	CTCAG	2 cut(s)	242, 424
BspLI	GGNNCC	2 cut(s)	365, 443
BspPI	GGATC	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	5 cut(s)	38, 69, 324, 421, 436
BssSI	CACGAG	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	4 cut(s)	18, 84, 272, 353
BstC8I	GCNNGC	2 cut(s)	481, 516
BstDEI	CTNAG	2 cut(s)	229, 411
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	41, 72, 327, 424, 439
BstMAI	GTCTC	3 cut(s)	204, 253, 414
BstMBI	GATC	5 cut(s)	38, 69, 324, 421, 436
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	3 cut(s)	403, 412, 450
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	243, 366
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	290, 371
BtgZI	GCGATG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	481, 516
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	106, 369
CsiI	ACCWGGT	1 cut(s)	243
DdeI	CTNAG	2 cut(s)	229, 411
DpnI	GATC	5 cut(s)	40, 71, 326, 423, 438
DpnII	GATC	5 cut(s)	38, 69, 324, 421, 436
Eam1104I	CTCTTC	4 cut(s)	18, 84, 272, 353
EarI	CTCTTC	4 cut(s)	18, 84, 272, 353
EciI	GGCGGA	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	397
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	399
FaiI	YATR	2 cut(s)	62, 344
Fnu4HI	GCNGC	4 cut(s)	99, 303, 354, 445
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	4 cut(s)	99, 303, 354, 445
FspBI	CTAG	2 cut(s)	386, 550
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	4 cut(s)	99, 303, 354, 445
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	290, 371
HapII	CCGG	4 cut(s)	294, 367, 476, 490
HhaI	GCGC	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	6 cut(s)	14, 44, 147, 157, 162, 545
HpaII	CCGG	4 cut(s)	294, 367, 476, 490
Hpy188III	TCNNGA	2 cut(s)	187, 328
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	116, 124
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	3 cut(s)	403, 412, 450
HpyF3I	CTNAG	2 cut(s)	229, 411
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	38, 69, 324, 421, 436
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	4 cut(s)	260, 402, 441, 478
LweI	GCATC	1 cut(s)	89
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	2 cut(s)	386, 550
MalI	GATC	5 cut(s)	40, 71, 326, 423, 438
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	5 cut(s)	38, 69, 324, 421, 436
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	2 cut(s)	257, 399
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	141, 156
MmeI	TCCRAC	3 cut(s)	16, 133, 197
MnlI	CCTC	8 cut(s)	280, 281, 290, 292, 301, 354, 529, 535
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	4 cut(s)	294, 367, 476, 490
MspR9I	CCNGG	2 cut(s)	245, 368
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	403, 412, 450
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	5 cut(s)	38, 69, 324, 421, 436
NlaIV	GGNNCC	2 cut(s)	365, 443
NmeAIII	GCCGAG	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	14, 44, 157
PkrI	GCNGC	4 cut(s)	100, 304, 355, 446
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	2 cut(s)	141, 156
PpsI	GAGTC	2 cut(s)	141, 156
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	365, 443
PspPI	GGNCC	2 cut(s)	106, 369
PsuI	RGATCY	1 cut(s)	38
PvuI	CGATCG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	99, 303, 354, 445
Sau3AI	GATC	5 cut(s)	38, 69, 324, 421, 436
Sau96I	GGNCC	2 cut(s)	106, 369
SchI	GAGTC	2 cut(s)	141, 156
ScrFI	CCNGG	2 cut(s)	245, 368
SduI	GDGCHC	2 cut(s)	257, 399
SetI	ASST	7 cut(s)	204, 246, 267, 336, 399, 475, 540
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	1 cut(s)	275
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	6 cut(s)	99, 258, 302, 353, 432, 445
SspMI	CTAG	2 cut(s)	386, 550
SstI	GAGCTC	1 cut(s)	399
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	243, 366
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	6 cut(s)	72, 150, 160, 165, 336, 390
TasI	AATT	1 cut(s)	275
TauI	GCSGC	4 cut(s)	101, 305, 356, 447
TfiI	GAWTC	3 cut(s)	14, 44, 157
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	2 cut(s)	159, 361
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	386, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.